RNA–Protein interactions for RNA: ENST00000401394.5

CTCF-202, Transcript of CCCTC-binding factor, humanhuman

TSL 1 (best) BASIC

Gene CTCF, Length 2,978 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTCF-202ENST00000401394 KIAA0586Q9BVV6 1533 aa27.95■■■□□ 2.07
CTCF-202ENST00000401394 MYT1LQ9UL68 1186 aa27.95■■■□□ 2.06
CTCF-202ENST00000401394 RAPGEF6Q8TEU7 1601 aa27.94■■■□□ 2.06
CTCF-202ENST00000401394 MAGI1Q96QZ7 1491 aaPredicted RBP27.94■■■□□ 2.06
CTCF-202ENST00000401394 CRBNQ96SW2 442 aa27.93■■■□□ 2.06
CTCF-202ENST00000401394 NEFMP07197 916 aa27.93■■■□□ 2.06
CTCF-202ENST00000401394 BRD4O60885 1362 aaPredicted RBP27.91■■■□□ 2.06
CTCF-202ENST00000401394 CHMP7Q8WUX9 453 aaPredicted RBP27.91■■■□□ 2.06
CTCF-202ENST00000401394 BACH2Q9BYV9 841 aa27.9■■■□□ 2.06
CTCF-202ENST00000401394 ANO8Q9HCE9 1232 aaPredicted RBP27.9■■■□□ 2.06
CTCF-202ENST00000401394 RALBP1Q15311 655 aa27.9■■■□□ 2.06
CTCF-202ENST00000401394 RALGAPBQ86X10 1494 aa27.9■■■□□ 2.06
CTCF-202ENST00000401394 PER1O15534 1290 aaPredicted RBP27.88■■■□□ 2.05
CTCF-202ENST00000401394 TSPY4P0CV99 314 aa27.87■■■□□ 2.05
CTCF-202ENST00000401394 TSPY10P0CW01 314 aa27.87■■■□□ 2.05
CTCF-202ENST00000401394 NLRP13Q86W25 1043 aa27.87■■■□□ 2.05
CTCF-202ENST00000401394 ARID4BQ4LE39 1312 aaPredicted RBP27.86■■■□□ 2.05
CTCF-202ENST00000401394 PANK3Q9H999 370 aa27.86■■■□□ 2.05
CTCF-202ENST00000401394 SYNJ2O15056 1496 aa27.85■■■□□ 2.05
CTCF-202ENST00000401394 PLEKHD1A6NEE1 506 aa27.84■■■□□ 2.05
CTCF-202ENST00000401394 C9orf84Q5VXU9 1444 aa27.84■■■□□ 2.05
CTCF-202ENST00000401394 UHRF1BP1Q6BDS2 1440 aa27.84■■■□□ 2.05
CTCF-202ENST00000401394 TCERG1O14776 1098 aaKnown RBP27.84■■■□□ 2.05
CTCF-202ENST00000401394 KTN1Q86UP2 1357 aaKnown RBP27.82■■■□□ 2.04
CTCF-202ENST00000401394 DISP3Q9P2K9 1392 aa27.82■■■□□ 2.04
CTCF-202ENST00000401394 JPH4Q96JJ6 628 aa27.82■■■□□ 2.04
CTCF-202ENST00000401394 ADGRL2O95490 1459 aa27.78■■■□□ 2.04
CTCF-202ENST00000401394 PARD3Q8TEW0 1356 aa27.77■■■□□ 2.04
CTCF-202ENST00000401394 ADAMTS8Q9UP79 889 aa27.77■■■□□ 2.04
CTCF-202ENST00000401394 CEP170Q5SW79 1584 aa27.76■■■□□ 2.03
CTCF-202ENST00000401394 TESK2Q96S53 571 aa27.74■■■□□ 2.03
CTCF-202ENST00000401394 ADGBQ8N7X0 1667 aa27.72■■■□□ 2.03
CTCF-202ENST00000401394 NUP160Q12769 1436 aa27.68■■■□□ 2.02
CTCF-202ENST00000401394 RGS3P49796 1198 aa27.66■■■□□ 2.02
CTCF-202ENST00000401394 PRAG1Q86YV5 1406 aa27.66■■■□□ 2.02
CTCF-202ENST00000401394 CCDC146Q8IYE0 955 aa27.66■■■□□ 2.02
CTCF-202ENST00000401394 CROCC2H7BZ55 1655 aa27.66■■■□□ 2.02
CTCF-202ENST00000401394 ZBTB4Q9P1Z0 1013 aaPredicted RBP27.66■■■□□ 2.02
CTCF-202ENST00000401394 ATP10BO94823 1461 aa27.65■■■□□ 2.02
CTCF-202ENST00000401394 BRPF3Q9ULD4 1205 aa27.65■■■□□ 2.02
CTCF-202ENST00000401394 PDE3BQ13370 1112 aa27.64■■■□□ 2.02
CTCF-202ENST00000401394 CCDC144AA2RUR9 1427 aa27.64■■■□□ 2.02
CTCF-202ENST00000401394 ITSN2Q9NZM3 1697 aa27.63■■■□□ 2.01
CTCF-202ENST00000401394 CDC42BPAQ5VT25 1732 aa27.63■■■□□ 2.01
CTCF-202ENST00000401394 PLEKHH1Q9ULM0 1364 aa27.62■■■□□ 2.01
CTCF-202ENST00000401394 PLA2R1Q13018 1463 aa27.61■■■□□ 2.01
CTCF-202ENST00000401394 MS4A1P11836 297 aa27.61■■■□□ 2.01
CTCF-202ENST00000401394 ARHGEF12Q9NZN5 1544 aa27.61■■■□□ 2.01
CTCF-202ENST00000401394 CARMIL2Q6F5E8 1435 aa27.61■■■□□ 2.01
CTCF-202ENST00000401394 KDM5DQ9BY66 1539 aa27.6■■■□□ 2.01
CTCF-202ENST00000401394 SPINK5Q9NQ38 1064 aaPredicted RBP27.6■■■□□ 2.01
CTCF-202ENST00000401394 ABCC10Q5T3U5 1492 aa27.6■■■□□ 2.01
CTCF-202ENST00000401394 E9PCH4 1651 aa27.59■■■□□ 2.01
CTCF-202ENST00000401394 FAM135AQ9P2D6 1515 aa27.58■■■□□ 2
CTCF-202ENST00000401394 A2MP01023 1474 aa27.57■■■□□ 2
CTCF-202ENST00000401394 NFKBIBQ15653 356 aa27.56■■■□□ 2
CTCF-202ENST00000401394 DUSP27Q5VZP5 1158 aa27.55■■■□□ 2
CTCF-202ENST00000401394 PTPRGP23470 1445 aa27.54■■■□□ 2
CTCF-202ENST00000401394 ERBINQ96RT1 1412 aa27.53■■■□□ 2
CTCF-202ENST00000401394 PPP2R1AP30153 589 aa27.53■■■□□ 2
CTCF-202ENST00000401394 KDM2BQ8NHM5 1336 aa27.52■■■□□ 2
CTCF-202ENST00000401394 TMF1P82094 1093 aa27.52■■■□□ 2
CTCF-202ENST00000401394 BCAR3O75815 825 aa27.52■■■□□ 2
CTCF-202ENST00000401394 DMRT2Q9Y5R5 561 aa27.52■■■□□ 2
CTCF-202ENST00000401394 BLMP54132 1417 aaPredicted RBP27.51■■□□□ 1.99
CTCF-202ENST00000401394 C8orf34Q49A92 452 aa27.5■■□□□ 1.99
CTCF-202ENST00000401394 COL17A1Q9UMD9 1497 aaPredicted RBP27.5■■□□□ 1.99
CTCF-202ENST00000401394 TRPM1Q7Z4N2 1603 aa27.49■■□□□ 1.99
CTCF-202ENST00000401394 WDR43Q15061 677 aaKnown RBP eCLIP27.49■■□□□ 1.99
CTCF-202ENST00000401394 FRAT1Q92837 279 aaPredicted RBP27.48■■□□□ 1.99
CTCF-202ENST00000401394 ADCY10Q96PN6 1610 aa27.48■■□□□ 1.99
CTCF-202ENST00000401394 MAGI2Q86UL8 1455 aa27.48■■□□□ 1.99
CTCF-202ENST00000401394 KNSTRNQ9Y448 316 aa27.47■■□□□ 1.99
CTCF-202ENST00000401394 PPM1GO15355 546 aaPredicted RBP27.47■■□□□ 1.99
CTCF-202ENST00000401394 PLEKHH2Q8IVE3 1493 aa27.47■■□□□ 1.99
CTCF-202ENST00000401394 FRAT2O75474 233 aaPredicted RBP27.45■■□□□ 1.98
CTCF-202ENST00000401394 APAF1O14727 1248 aa27.44■■□□□ 1.98
CTCF-202ENST00000401394 SHANK2Q9UPX8 1470 aa27.44■■□□□ 1.98
CTCF-202ENST00000401394 AMER1Q5JTC6 1135 aaPredicted RBP27.42■■□□□ 1.98
CTCF-202ENST00000401394 ABCA8O94911 1581 aa27.42■■□□□ 1.98
CTCF-202ENST00000401394 GOLGA2Q08379 1002 aa27.42■■□□□ 1.98
CTCF-202ENST00000401394 GSE1Q14687 1217 aa27.41■■□□□ 1.98
CTCF-202ENST00000401394 WASHC2CQ9Y4E1 1318 aa27.41■■□□□ 1.98
CTCF-202ENST00000401394 DAXXQ9UER7 740 aaPredicted RBP27.41■■□□□ 1.98
CTCF-202ENST00000401394 USP35Q9P2H5 1018 aa27.4■■□□□ 1.98
CTCF-202ENST00000401394 SAMD9LQ8IVG5 1584 aa27.4■■□□□ 1.98
CTCF-202ENST00000401394 GPRASP1Q5JY77 1395 aa27.4■■□□□ 1.98
CTCF-202ENST00000401394 IGHDP01880 384 aa27.4■■□□□ 1.98
CTCF-202ENST00000401394 CCDC141Q6ZP82 1450 aa27.39■■□□□ 1.97
CTCF-202ENST00000401394 ZMYM4Q5VZL5 1548 aa27.39■■□□□ 1.97
CTCF-202ENST00000401394 PRKCSHP14314 528 aaPredicted RBP27.39■■□□□ 1.97
CTCF-202ENST00000401394 SEC24BO95487 1268 aa27.38■■□□□ 1.97
CTCF-202ENST00000401394 CENPQQ7L2Z9 268 aaPredicted RBP27.38■■□□□ 1.97
CTCF-202ENST00000401394 SYCP2Q9BX26 1530 aa27.38■■□□□ 1.97
CTCF-202ENST00000401394 FAM161AQ3B820 660 aa27.38■■□□□ 1.97
CTCF-202ENST00000401394 DDRGK1Q96HY6 314 aa27.38■■□□□ 1.97
CTCF-202ENST00000401394 CHD1O14646 1710 aa27.36■■□□□ 1.97
CTCF-202ENST00000401394 NEUROD2Q15784 382 aa27.36■■□□□ 1.97
CTCF-202ENST00000401394 ZNF521Q96K83 1311 aa27.35■■□□□ 1.97
CTCF-202ENST00000401394 SLFN5Q08AF3 891 aa27.35■■□□□ 1.97
Retrieved 100 of 20,778 RNA–protein pairs in 47.3 ms