RNA–Protein interactions for RNA: ENST00000399455.2

USP47-203, Transcript of ubiquitin specific peptidase 47, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene USP47, Length 7,396 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP47-203ENST00000399455 TRAK1Q9UPV9 953 aa10.09□□□□□ -0.79
USP47-203ENST00000399455 GOLGA6L6A8MZA4 724 aa10.09□□□□□ -0.79
USP47-203ENST00000399455 RALBP1Q15311 655 aa10.08□□□□□ -0.8
USP47-203ENST00000399455 SYTL4Q96C24 671 aaPredicted RBP10.08□□□□□ -0.8
USP47-203ENST00000399455 MYOM3Q5VTT5 1437 aa10.08□□□□□ -0.8
USP47-203ENST00000399455 DHX57Q6P158 1386 aaKnown RBP10.08□□□□□ -0.8
USP47-203ENST00000399455 PROSER2Q86WR7 435 aaPredicted RBP10.08□□□□□ -0.8
USP47-203ENST00000399455 ANP32EQ9BTT0 268 aa10.08□□□□□ -0.8
USP47-203ENST00000399455 DMRT2Q9Y5R5 561 aa10.08□□□□□ -0.8
USP47-203ENST00000399455 CWC22Q9HCG8 908 aaKnown RBP10.07□□□□□ -0.8
USP47-203ENST00000399455 KIAA1211Q6ZU35 1233 aa10.07□□□□□ -0.8
USP47-203ENST00000399455 AMOTL1Q8IY63 956 aa10.07□□□□□ -0.8
USP47-203ENST00000399455 CTDP1Q9Y5B0 961 aaPredicted RBP10.07□□□□□ -0.8
USP47-203ENST00000399455 MIA2Q96PC5 1412 aa10.07□□□□□ -0.8
USP47-203ENST00000399455 NESP48681 1621 aa10.06□□□□□ -0.8
USP47-203ENST00000399455 ANKLE2Q86XL3 938 aa10.06□□□□□ -0.8
USP47-203ENST00000399455 HECW1Q76N89 1606 aa10.06□□□□□ -0.8
USP47-203ENST00000399455 CGNL1Q0VF96 1302 aa10.05□□□□□ -0.8
USP47-203ENST00000399455 CFTRP13569 1480 aa10.05□□□□□ -0.8
USP47-203ENST00000399455 ANO8Q9HCE9 1232 aaPredicted RBP10.05□□□□□ -0.8
USP47-203ENST00000399455 PIP4K2BP78356 416 aa10.05□□□□□ -0.8
USP47-203ENST00000399455 STAC3Q96MF2 364 aa10.04□□□□□ -0.8
USP47-203ENST00000399455 TOPBP1Q92547 1522 aa10.04□□□□□ -0.8
USP47-203ENST00000399455 SMG6Q86US8 1419 aaKnown RBP10.04□□□□□ -0.8
USP47-203ENST00000399455 TEFQ10587 303 aa10.04□□□□□ -0.8
USP47-203ENST00000399455 HMMRO75330 724 aa10.04□□□□□ -0.8
USP47-203ENST00000399455 TXNDC2Q86VQ3 553 aa10.03□□□□□ -0.8
USP47-203ENST00000399455 HSPA5P11021 654 aaKnown RBP10.03□□□□□ -0.8
USP47-203ENST00000399455 MINK1Q8N4C8 1332 aaPredicted RBP10.03□□□□□ -0.8
USP47-203ENST00000399455 KANK4Q5T7N3 995 aaPredicted RBP10.03□□□□□ -0.8
USP47-203ENST00000399455 RAPGEF4Q8WZA2 1011 aa10.03□□□□□ -0.8
USP47-203ENST00000399455 KIF21BO75037 1637 aa10.03□□□□□ -0.8
USP47-203ENST00000399455 RRBP1Q9P2E9 1410 aaKnown RBP10.02□□□□□ -0.81
USP47-203ENST00000399455 RAB3GAP2Q9H2M9 1393 aa10.02□□□□□ -0.81
USP47-203ENST00000399455 EFCAB5A4FU69 1503 aa10.01□□□□□ -0.81
USP47-203ENST00000399455 NEXNQ0ZGT2 675 aa10.01□□□□□ -0.81
USP47-203ENST00000399455 FYCO1Q9BQS8 1478 aa10.01□□□□□ -0.81
USP47-203ENST00000399455 ZBTB4Q9P1Z0 1013 aaPredicted RBP10.01□□□□□ -0.81
USP47-203ENST00000399455 RBM33Q96EV2 1170 aaKnown RBP10.01□□□□□ -0.81
USP47-203ENST00000399455 KIF15Q9NS87 1388 aa10.01□□□□□ -0.81
USP47-203ENST00000399455 NUTM2BA6NNL0 878 aaPredicted RBP10□□□□□ -0.81
USP47-203ENST00000399455 NUTM2EB1AL46 878 aaPredicted RBP10□□□□□ -0.81
USP47-203ENST00000399455 HSP90AB1P08238 724 aaKnown RBP10□□□□□ -0.81
USP47-203ENST00000399455 HSP90B1P14625 803 aaKnown RBP10□□□□□ -0.81
USP47-203ENST00000399455 NUTM2AQ8IVF1 878 aaPredicted RBP10□□□□□ -0.81
USP47-203ENST00000399455 FBXW7Q969H0 707 aa10□□□□□ -0.81
USP47-203ENST00000399455 IGF1RP08069 1367 aa10□□□□□ -0.81
USP47-203ENST00000399455 PHLDB1Q86UU1 1377 aa10□□□□□ -0.81
USP47-203ENST00000399455 LRRFIP1Q32MZ4 808 aaKnown RBP10□□□□□ -0.81
USP47-203ENST00000399455 GOLGA6L4A6NEF3 574 aa10□□□□□ -0.81
USP47-203ENST00000399455 ESCO1Q5FWF5 840 aa10□□□□□ -0.81
USP47-203ENST00000399455 VPS37DQ86XT2 251 aa9.99□□□□□ -0.81
USP47-203ENST00000399455 DDX58O95786 925 aaKnown RBP9.99□□□□□ -0.81
USP47-203ENST00000399455 ITPRIPQ8IWB1 547 aa9.98□□□□□ -0.81
USP47-203ENST00000399455 CUL7Q14999 1698 aa9.98□□□□□ -0.81
USP47-203ENST00000399455 NRDCO43847 1150 aa9.98□□□□□ -0.81
USP47-203ENST00000399455 MAGI1Q96QZ7 1491 aaPredicted RBP9.98□□□□□ -0.81
USP47-203ENST00000399455 TCEAL9Q9UHQ7 104 aa9.98□□□□□ -0.81
USP47-203ENST00000399455 VPS53Q5VIR6 699 aa9.97□□□□□ -0.81
USP47-203ENST00000399455 KRI1Q8N9T8 703 aaKnown RBP9.96□□□□□ -0.81
USP47-203ENST00000399455 CCDC34Q96HJ3 373 aa9.96□□□□□ -0.81
USP47-203ENST00000399455 HTATSF1O43719 755 aaKnown RBP9.96□□□□□ -0.81
USP47-203ENST00000399455 NLRP2Q9NX02 1062 aa9.96□□□□□ -0.81
USP47-203ENST00000399455 SLC4A10Q6U841 1118 aa9.96□□□□□ -0.81
USP47-203ENST00000399455 EHBP1L1Q8N3D4 1523 aa9.96□□□□□ -0.81
USP47-203ENST00000399455 IRX6P78412 446 aaPredicted RBP9.96□□□□□ -0.82
USP47-203ENST00000399455 NCBP3Q53F19 620 aaKnown RBP9.96□□□□□ -0.82
USP47-203ENST00000399455 CASKIN1Q8WXD9 1431 aa9.96□□□□□ -0.82
USP47-203ENST00000399455 KIAA2012Q0VF49 1180 aa9.95□□□□□ -0.82
USP47-203ENST00000399455 SMC4Q9NTJ3 1288 aa9.95□□□□□ -0.82
USP47-203ENST00000399455 TEX14Q8IWB6 1497 aa9.95□□□□□ -0.82
USP47-203ENST00000399455 L1TD1Q5T7N2 865 aaKnown RBP9.95□□□□□ -0.82
USP47-203ENST00000399455 PPP1R1BQ9UD71 204 aaPredicted RBP9.95□□□□□ -0.82
USP47-203ENST00000399455 TPRNQ4KMQ1 711 aa9.95□□□□□ -0.82
USP47-203ENST00000399455 MARCH6O60337 910 aa9.94□□□□□ -0.82
USP47-203ENST00000399455 WWC1Q8IX03 1113 aa9.94□□□□□ -0.82
USP47-203ENST00000399455 POLA1P09884 1462 aaPredicted RBP9.94□□□□□ -0.82
USP47-203ENST00000399455 RWDD1Q9H446 243 aaPredicted RBP9.94□□□□□ -0.82
USP47-203ENST00000399455 APBB1O00213 710 aa9.94□□□□□ -0.82
USP47-203ENST00000399455 ERICH3Q5RHP9 1530 aa9.94□□□□□ -0.82
USP47-203ENST00000399455 AKNAQ7Z591 1439 aa9.94□□□□□ -0.82
USP47-203ENST00000399455 PDE3BQ13370 1112 aa9.94□□□□□ -0.82
USP47-203ENST00000399455 KIF6Q6ZMV9 814 aa9.94□□□□□ -0.82
USP47-203ENST00000399455 EPRSP07814 1512 aaKnown RBP9.94□□□□□ -0.82
USP47-203ENST00000399455 PTMAP06454 111 aaKnown RBP9.94□□□□□ -0.82
USP47-203ENST00000399455 CHAF1AQ13111 956 aaPredicted RBP9.94□□□□□ -0.82
USP47-203ENST00000399455 HSCBQ8IWL3 235 aa9.94□□□□□ -0.82
USP47-203ENST00000399455 CD109Q6YHK3 1445 aa9.94□□□□□ -0.82
USP47-203ENST00000399455 CHMP4CQ96CF2 233 aa9.93□□□□□ -0.82
USP47-203ENST00000399455 STRN4Q9NRL3 753 aa9.93□□□□□ -0.82
USP47-203ENST00000399455 TOP2BQ02880 1626 aa9.93□□□□□ -0.82
USP47-203ENST00000399455 TOMM22Q9NS69 142 aa9.93□□□□□ -0.82
USP47-203ENST00000399455 KIF14Q15058 1648 aa9.93□□□□□ -0.82
USP47-203ENST00000399455 ABTB2Q8N961 1025 aa9.93□□□□□ -0.82
USP47-203ENST00000399455 CENPJQ9HC77 1338 aaPredicted RBP9.93□□□□□ -0.82
USP47-203ENST00000399455 IQGAP2Q13576 1575 aa9.93□□□□□ -0.82
USP47-203ENST00000399455 SENP3-EIF4A1A0A087X0R7 540 aa9.92□□□□□ -0.82
USP47-203ENST00000399455 PMFBP1Q8TBY8 1022 aa9.92□□□□□ -0.82
USP47-203ENST00000399455 RGS3P49796 1198 aa9.92□□□□□ -0.82
USP47-203ENST00000399455 ROCK1Q13464 1354 aa9.92□□□□□ -0.82
Retrieved 100 of 20,778 RNA–protein pairs in 66.3 ms