RNA–Protein interactions for RNA: ENST00000398145.6

HPS4-202, Transcript of HPS4, biogenesis of lysosomal organelles complex 3 subunit 2, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HPS4, Length 4,497 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HPS4-202ENST00000398145 BACH2Q9BYV9 841 aa13.89□□□□□ -0.19
HPS4-202ENST00000398145 SMG6Q86US8 1419 aaKnown RBP13.88□□□□□ -0.19
HPS4-202ENST00000398145 NGEFQ8N5V2 710 aa13.88□□□□□ -0.19
HPS4-202ENST00000398145 KIAA2012Q0VF49 1180 aa13.87□□□□□ -0.19
HPS4-202ENST00000398145 PNISRQ8TF01 805 aaKnown RBP13.87□□□□□ -0.19
HPS4-202ENST00000398145 SAFB2Q14151 953 aaKnown RBP eCLIP13.87□□□□□ -0.19
HPS4-202ENST00000398145 FGD5Q6ZNL6 1462 aa13.87□□□□□ -0.19
HPS4-202ENST00000398145 ANO8Q9HCE9 1232 aaPredicted RBP13.87□□□□□ -0.19
HPS4-202ENST00000398145 NCOA2Q15596 1464 aa13.87□□□□□ -0.19
HPS4-202ENST00000398145 HFM1A2PYH4 1435 aa13.87□□□□□ -0.19
HPS4-202ENST00000398145 CDCA7LQ96GN5 454 aa13.86□□□□□ -0.19
HPS4-202ENST00000398145 BCL2L13Q9BXK5 485 aa13.86□□□□□ -0.19
HPS4-202ENST00000398145 BRPF3Q9ULD4 1205 aa13.86□□□□□ -0.19
HPS4-202ENST00000398145 GOLGA6L4A6NEF3 574 aa13.86□□□□□ -0.19
HPS4-202ENST00000398145 APBB1O00213 710 aa13.86□□□□□ -0.19
HPS4-202ENST00000398145 RRP7AQ9Y3A4 280 aaKnown RBP13.86□□□□□ -0.19
HPS4-202ENST00000398145 NBPF8Q3BBV2 869 aa13.85□□□□□ -0.19
HPS4-202ENST00000398145 EFCAB2Q5VUJ9 269 aa13.85□□□□□ -0.19
HPS4-202ENST00000398145 FOXD4L1Q9NU39 408 aa13.85□□□□□ -0.19
HPS4-202ENST00000398145 SKOR2Q2VWA4 1001 aaPredicted RBP13.84□□□□□ -0.19
HPS4-202ENST00000398145 CHMP5Q9NZZ3 219 aa13.84□□□□□ -0.19
HPS4-202ENST00000398145 SYAP1Q96A49 352 aaPredicted RBP13.84□□□□□ -0.19
HPS4-202ENST00000398145 FYCO1Q9BQS8 1478 aa13.84□□□□□ -0.19
HPS4-202ENST00000398145 VSIG10Q8N0Z9 540 aa13.84□□□□□ -0.19
HPS4-202ENST00000398145 MIA2Q96PC5 1412 aa13.83□□□□□ -0.19
HPS4-202ENST00000398145 ZNF644Q9H582 1327 aaPredicted RBP13.83□□□□□ -0.19
HPS4-202ENST00000398145 KCNJ4P48050 445 aa13.83□□□□□ -0.2
HPS4-202ENST00000398145 ZKSCAN2Q63HK3 967 aa13.83□□□□□ -0.2
HPS4-202ENST00000398145 TIAM1Q13009 1591 aa13.83□□□□□ -0.2
HPS4-202ENST00000398145 FANCD2Q9BXW9 1451 aa13.83□□□□□ -0.2
HPS4-202ENST00000398145 DDX49Q9Y6V7 483 aaKnown RBP13.82□□□□□ -0.2
HPS4-202ENST00000398145 FRAT2O75474 233 aaPredicted RBP13.82□□□□□ -0.2
HPS4-202ENST00000398145 ARID3AQ99856 593 aa13.82□□□□□ -0.2
HPS4-202ENST00000398145 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP13.82□□□□□ -0.2
HPS4-202ENST00000398145 HDGFL2Q7Z4V5 671 aaPredicted RBP13.81□□□□□ -0.2
HPS4-202ENST00000398145 OS9Q13438 667 aaPredicted RBP13.81□□□□□ -0.2
HPS4-202ENST00000398145 NRDCO43847 1150 aa13.81□□□□□ -0.2
HPS4-202ENST00000398145 PLPPR3Q6T4P5 718 aa13.8□□□□□ -0.2
HPS4-202ENST00000398145 ADAMTS8Q9UP79 889 aa13.8□□□□□ -0.2
HPS4-202ENST00000398145 GOLGA6L6A8MZA4 724 aa13.8□□□□□ -0.2
HPS4-202ENST00000398145 C14orf37Q86TY3 774 aa13.8□□□□□ -0.2
HPS4-202ENST00000398145 ZBTB7CA1YPR0 619 aa13.8□□□□□ -0.2
HPS4-202ENST00000398145 STK26Q9P289 416 aa13.79□□□□□ -0.2
HPS4-202ENST00000398145 FGD1P98174 961 aa13.79□□□□□ -0.2
HPS4-202ENST00000398145 ST18O60284 1047 aa13.78□□□□□ -0.2
HPS4-202ENST00000398145 CDK11BP21127 795 aaKnown RBP13.78□□□□□ -0.2
HPS4-202ENST00000398145 TOP2BQ02880 1626 aa13.78□□□□□ -0.2
HPS4-202ENST00000398145 DRC7Q8IY82 874 aa13.78□□□□□ -0.2
HPS4-202ENST00000398145 AAMPQ13685 434 aa13.78□□□□□ -0.2
HPS4-202ENST00000398145 WASHC2CQ9Y4E1 1318 aa13.78□□□□□ -0.2
HPS4-202ENST00000398145 GGT6Q6P531 493 aa13.78□□□□□ -0.2
HPS4-202ENST00000398145 JPH4Q96JJ6 628 aa13.77□□□□□ -0.2
HPS4-202ENST00000398145 CFTRP13569 1480 aa13.77□□□□□ -0.2
HPS4-202ENST00000398145 KIF3BO15066 747 aa13.77□□□□□ -0.21
HPS4-202ENST00000398145 ERCC6Q03468 1493 aa13.77□□□□□ -0.21
HPS4-202ENST00000398145 RAD54L2Q9Y4B4 1467 aa13.76□□□□□ -0.21
HPS4-202ENST00000398145 KIAA1211Q6ZU35 1233 aa13.76□□□□□ -0.21
HPS4-202ENST00000398145 DDX19BQ9UMR2 479 aa13.76□□□□□ -0.21
HPS4-202ENST00000398145 ANKRD45Q5TZF3 282 aa13.76□□□□□ -0.21
HPS4-202ENST00000398145 TERF2IPQ9NYB0 399 aa13.76□□□□□ -0.21
HPS4-202ENST00000398145 ANKRD50Q9ULJ7 1429 aa13.76□□□□□ -0.21
HPS4-202ENST00000398145 MRE11P49959 708 aa13.75□□□□□ -0.21
HPS4-202ENST00000398145 DZIP1LQ8IYY4 767 aaKnown RBP13.75□□□□□ -0.21
HPS4-202ENST00000398145 C22orf23Q9BZE7 217 aa13.75□□□□□ -0.21
HPS4-202ENST00000398145 NAIPQ13075 1403 aa13.75□□□□□ -0.21
HPS4-202ENST00000398145 HMMRO75330 724 aa13.75□□□□□ -0.21
HPS4-202ENST00000398145 FAM43AQ8N2R8 423 aa13.75□□□□□ -0.21
HPS4-202ENST00000398145 PANK1Q8TE04 598 aa13.75□□□□□ -0.21
HPS4-202ENST00000398145 TRAK1Q9UPV9 953 aa13.74□□□□□ -0.21
HPS4-202ENST00000398145 SPAG9O60271 1321 aaKnown RBP13.74□□□□□ -0.21
HPS4-202ENST00000398145 RTF1Q92541 710 aaKnown RBP13.74□□□□□ -0.21
HPS4-202ENST00000398145 GAPVD1Q14C86 1478 aa13.74□□□□□ -0.21
HPS4-202ENST00000398145 C11orf95C9JLR9 678 aaPredicted RBP13.73□□□□□ -0.21
HPS4-202ENST00000398145 NCAPD3P42695 1498 aa13.73□□□□□ -0.21
HPS4-202ENST00000398145 PHF14O94880 888 aa13.73□□□□□ -0.21
HPS4-202ENST00000398145 EFCAB5A4FU69 1503 aa13.71□□□□□ -0.21
HPS4-202ENST00000398145 RUNDC1Q96C34 613 aa13.71□□□□□ -0.21
HPS4-202ENST00000398145 TRAK2O60296 914 aa13.71□□□□□ -0.22
HPS4-202ENST00000398145 PLEKHG5O94827 1062 aa13.71□□□□□ -0.22
HPS4-202ENST00000398145 PDE3AQ14432 1141 aa13.71□□□□□ -0.22
HPS4-202ENST00000398145 SOX12O15370 315 aa13.7□□□□□ -0.22
HPS4-202ENST00000398145 LMOD3Q0VAK6 560 aa13.7□□□□□ -0.22
HPS4-202ENST00000398145 TRIM6-TRIM34B2RNG4 842 aa13.7□□□□□ -0.22
HPS4-202ENST00000398145 PPP2R1AP30153 589 aa13.69□□□□□ -0.22
HPS4-202ENST00000398145 FOXD4L5Q5VV16 416 aaPredicted RBP13.69□□□□□ -0.22
HPS4-202ENST00000398145 FOXD4L4Q8WXT5 416 aaPredicted RBP13.69□□□□□ -0.22
HPS4-202ENST00000398145 STAC3Q96MF2 364 aa13.69□□□□□ -0.22
HPS4-202ENST00000398145 NOL8Q76FK4 1167 aaKnown RBP13.68□□□□□ -0.22
HPS4-202ENST00000398145 NAP1L2Q9ULW6 460 aaPredicted RBP13.68□□□□□ -0.22
HPS4-202ENST00000398145 KIAA1107Q9UPP5 1409 aa13.68□□□□□ -0.22
HPS4-202ENST00000398145 ELL2O00472 640 aaPredicted RBP13.68□□□□□ -0.22
HPS4-202ENST00000398145 MAP3K1Q13233 1512 aa13.68□□□□□ -0.22
HPS4-202ENST00000398145 STK31Q9BXU1 1019 aa13.67□□□□□ -0.22
HPS4-202ENST00000398145 LNPKQ9C0E8 428 aa13.67□□□□□ -0.22
HPS4-202ENST00000398145 CSPP1Q1MSJ5 1256 aa13.67□□□□□ -0.22
HPS4-202ENST00000398145 PDZRN4Q6ZMN7 1036 aaPredicted RBP13.67□□□□□ -0.22
HPS4-202ENST00000398145 NBPF1Q3BBV0 1214 aa13.66□□□□□ -0.22
HPS4-202ENST00000398145 FAM13BQ9NYF5 915 aa13.66□□□□□ -0.22
HPS4-202ENST00000398145 NUCB2P80303 420 aa13.66□□□□□ -0.22
HPS4-202ENST00000398145 SLC4A10Q6U841 1118 aa13.66□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 70.4 ms