RNA–Protein interactions for RNA: ENST00000396828.8

NEDD8-202, Transcript of neural precursor cell expressed, developmentally down-regulated 8, humanhuman

TSL 2

Gene NEDD8, Length 626 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD8-202ENST00000396828 DNMT1P26358 1616 aaKnown RBP16.38■□□□□ 0.21
NEDD8-202ENST00000396828 PLA2R1Q13018 1463 aa16.38■□□□□ 0.21
NEDD8-202ENST00000396828 RSPH4AQ5TD94 716 aa16.37■□□□□ 0.21
NEDD8-202ENST00000396828 A2ML1A8K2U0 1454 aa16.36■□□□□ 0.21
NEDD8-202ENST00000396828 KDM5DQ9BY66 1539 aa16.35■□□□□ 0.21
NEDD8-202ENST00000396828 PKD2Q13563 968 aa16.35■□□□□ 0.21
NEDD8-202ENST00000396828 WASHC2CQ9Y4E1 1318 aa16.35■□□□□ 0.21
NEDD8-202ENST00000396828 PZPP20742 1482 aa16.35■□□□□ 0.21
NEDD8-202ENST00000396828 TSPY4P0CV99 314 aa16.34■□□□□ 0.21
NEDD8-202ENST00000396828 TSPY10P0CW01 314 aa16.34■□□□□ 0.21
NEDD8-202ENST00000396828 TNRQ92752 1358 aa16.34■□□□□ 0.21
NEDD8-202ENST00000396828 IQSEC2Q5JU85 1478 aa16.32■□□□□ 0.2
NEDD8-202ENST00000396828 NEURL4Q96JN8 1562 aa16.31■□□□□ 0.2
NEDD8-202ENST00000396828 MAST1Q9Y2H9 1570 aa16.31■□□□□ 0.2
NEDD8-202ENST00000396828 MAP3K1Q13233 1512 aa16.3■□□□□ 0.2
NEDD8-202ENST00000396828 ILDR2Q71H61 639 aa16.3■□□□□ 0.2
NEDD8-202ENST00000396828 MYOM3Q5VTT5 1437 aa16.29■□□□□ 0.2
NEDD8-202ENST00000396828 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP16.29■□□□□ 0.2
NEDD8-202ENST00000396828 RNF17Q9BXT8 1623 aaKnown RBP16.29■□□□□ 0.2
NEDD8-202ENST00000396828 FAM135AQ9P2D6 1515 aa16.29■□□□□ 0.2
NEDD8-202ENST00000396828 MIA2Q96PC5 1412 aa16.28■□□□□ 0.2
NEDD8-202ENST00000396828 POLR1AO95602 1720 aaPredicted RBP16.28■□□□□ 0.2
NEDD8-202ENST00000396828 DISP3Q9P2K9 1392 aa16.28■□□□□ 0.2
NEDD8-202ENST00000396828 MROH1Q8NDA8 1641 aa16.28■□□□□ 0.2
NEDD8-202ENST00000396828 ABCC3O15438 1527 aa16.28■□□□□ 0.2
NEDD8-202ENST00000396828 UBAP1LF5GYI3 381 aa16.26■□□□□ 0.19
NEDD8-202ENST00000396828 UGGT1Q9NYU2 1555 aa16.24■□□□□ 0.19
NEDD8-202ENST00000396828 CEP152O94986 1710 aa16.24■□□□□ 0.19
NEDD8-202ENST00000396828 CFAP65Q6ZU64 1925 aaKnown RBP16.23■□□□□ 0.19
NEDD8-202ENST00000396828 EIF2AK4Q9P2K8 1649 aaKnown RBP16.23■□□□□ 0.19
NEDD8-202ENST00000396828 NLRP1Q9C000 1473 aa16.23■□□□□ 0.19
NEDD8-202ENST00000396828 ABCC5O15440 1437 aa16.23■□□□□ 0.19
NEDD8-202ENST00000396828 ANKLE2Q86XL3 938 aa16.23■□□□□ 0.19
NEDD8-202ENST00000396828 SPATA31D1Q6ZQQ2 1576 aa16.22■□□□□ 0.19
NEDD8-202ENST00000396828 ZC3H13Q5T200 1668 aaKnown RBP16.22■□□□□ 0.19
NEDD8-202ENST00000396828 THEMISQ8N1K5 641 aaPredicted RBP16.22■□□□□ 0.19
NEDD8-202ENST00000396828 ERVK-7P63135 1459 aa16.22■□□□□ 0.19
NEDD8-202ENST00000396828 RRP7BPQ9NSQ0 103 aa16.21■□□□□ 0.19
NEDD8-202ENST00000396828 SHANK2Q9UPX8 1470 aa16.21■□□□□ 0.19
NEDD8-202ENST00000396828 VWDEQ8N2E2 1590 aa16.21■□□□□ 0.18
NEDD8-202ENST00000396828 DUOX2Q9NRD8 1548 aa16.2■□□□□ 0.18
NEDD8-202ENST00000396828 PTPN23Q9H3S7 1636 aa16.2■□□□□ 0.18
NEDD8-202ENST00000396828 CROCC2H7BZ55 1655 aa16.2■□□□□ 0.18
NEDD8-202ENST00000396828 MED14O60244 1454 aa16.19■□□□□ 0.18
NEDD8-202ENST00000396828 KIF15Q9NS87 1388 aa16.19■□□□□ 0.18
NEDD8-202ENST00000396828 NPHP4O75161 1426 aaPredicted RBP16.19■□□□□ 0.18
NEDD8-202ENST00000396828 DEPDC5O75140 1603 aa16.18■□□□□ 0.18
NEDD8-202ENST00000396828 STRCP1A6NGW2 1772 aa16.17■□□□□ 0.18
NEDD8-202ENST00000396828 DAPK1P53355 1430 aa16.17■□□□□ 0.18
NEDD8-202ENST00000396828 CPS1P31327 1500 aa16.16■□□□□ 0.18
NEDD8-202ENST00000396828 IQGAP1P46940 1657 aa16.16■□□□□ 0.18
NEDD8-202ENST00000396828 CHIC2Q9UKJ5 165 aa16.16■□□□□ 0.18
NEDD8-202ENST00000396828 UBR1Q8IWV7 1749 aa16.16■□□□□ 0.18
NEDD8-202ENST00000396828 PRDM15P57071 1507 aaPredicted RBP16.15■□□□□ 0.18
NEDD8-202ENST00000396828 PIP4K2BP78356 416 aa16.15■□□□□ 0.18
NEDD8-202ENST00000396828 FGD6Q6ZV73 1430 aa16.15■□□□□ 0.18
NEDD8-202ENST00000396828 GRWD1Q9BQ67 446 aaKnown RBP eCLIP16.15■□□□□ 0.189e-8■■■□□ 14.9
NEDD8-202ENST00000396828 SENP3Q9H4L4 574 aaPredicted RBP16.15■□□□□ 0.18
NEDD8-202ENST00000396828 ALKQ9UM73 1620 aa16.15■□□□□ 0.18
NEDD8-202ENST00000396828 APLP2Q06481 763 aa16.14■□□□□ 0.17
NEDD8-202ENST00000396828 SCAF1Q9H7N4 1312 aaKnown RBP16.14■□□□□ 0.17
NEDD8-202ENST00000396828 ERBINQ96RT1 1412 aa16.13■□□□□ 0.17
NEDD8-202ENST00000396828 LTKP29376 864 aa16.13■□□□□ 0.17
NEDD8-202ENST00000396828 HSPA1LP34931 641 aa16.13■□□□□ 0.17
NEDD8-202ENST00000396828 ARHGAP31Q2M1Z3 1444 aa16.11■□□□□ 0.17
NEDD8-202ENST00000396828 SOCS7O14512 581 aa16.1■□□□□ 0.17
NEDD8-202ENST00000396828 LRRC7Q96NW7 1537 aa16.09■□□□□ 0.17
NEDD8-202ENST00000396828 PIK3C2BO00750 1634 aa16.09■□□□□ 0.17
NEDD8-202ENST00000396828 TOM1O60784 492 aa16.09■□□□□ 0.17
NEDD8-202ENST00000396828 ARHGAP23Q9P227 1491 aa16.09■□□□□ 0.17
NEDD8-202ENST00000396828 TXNDC2Q86VQ3 553 aa16.08■□□□□ 0.16
NEDD8-202ENST00000396828 SCAF11Q99590 1463 aaKnown RBP16.08■□□□□ 0.16
NEDD8-202ENST00000396828 SLIT1O75093 1534 aa16.08■□□□□ 0.16
NEDD8-202ENST00000396828 ANKRD30AQ9BXX3 1397 aa16.06■□□□□ 0.16
NEDD8-202ENST00000396828 IDI1Q13907 227 aa16.05■□□□□ 0.16
NEDD8-202ENST00000396828 SYNMO15061 1565 aa16.04■□□□□ 0.16
NEDD8-202ENST00000396828 LMTK2Q8IWU2 1503 aa16.04■□□□□ 0.16
NEDD8-202ENST00000396828 FAM50AQ14320 339 aaKnown RBP16.04■□□□□ 0.16
NEDD8-202ENST00000396828 KANK1Q14678 1352 aa16.03■□□□□ 0.16
NEDD8-202ENST00000396828 XIRP1Q702N8 1843 aaKnown RBP16.03■□□□□ 0.16
NEDD8-202ENST00000396828 ADGRL2O95490 1459 aa16.03■□□□□ 0.16
NEDD8-202ENST00000396828 TMEM2Q9UHN6 1383 aa16.02■□□□□ 0.16
NEDD8-202ENST00000396828 MED1Q15648 1581 aaPredicted RBP16.01■□□□□ 0.15
NEDD8-202ENST00000396828 EFCAB6Q5THR3 1501 aa16.01■□□□□ 0.15
NEDD8-202ENST00000396828 NOS1P29475 1434 aa16.01■□□□□ 0.15
NEDD8-202ENST00000396828 EID1Q9Y6B2 187 aa16■□□□□ 0.15
NEDD8-202ENST00000396828 STAG3Q9UJ98 1225 aa15.99■□□□□ 0.15
NEDD8-202ENST00000396828 TET3O43151 1660 aa15.98■□□□□ 0.15
NEDD8-202ENST00000396828 ANKRD50Q9ULJ7 1429 aa15.97■□□□□ 0.15
NEDD8-202ENST00000396828 RBM33Q96EV2 1170 aaKnown RBP15.97■□□□□ 0.15
NEDD8-202ENST00000396828 SLC26A8Q96RN1 970 aa15.97■□□□□ 0.15
NEDD8-202ENST00000396828 KDM5AP29375 1690 aaKnown RBP15.97■□□□□ 0.15
NEDD8-202ENST00000396828 ADGRB3O60242 1522 aa15.95■□□□□ 0.14
NEDD8-202ENST00000396828 MYO5BQ9ULV0 1848 aa15.94■□□□□ 0.14
NEDD8-202ENST00000396828 PPARGC1BQ86YN6 1023 aaKnown RBP15.93■□□□□ 0.14
NEDD8-202ENST00000396828 SLC52A1Q9NWF4 448 aa15.93■□□□□ 0.14
NEDD8-202ENST00000396828 TMEM94Q12767 1356 aa15.92■□□□□ 0.14
NEDD8-202ENST00000396828 KCNA6P17658 529 aa15.91■□□□□ 0.14
NEDD8-202ENST00000396828 RPRD2Q5VT52 1461 aaKnown RBP15.91■□□□□ 0.14
NEDD8-202ENST00000396828 GCC2Q8IWJ2 1684 aa15.9■□□□□ 0.14
Retrieved 100 of 20,778 RNA–protein pairs in 239.2 ms