RNA–Protein interactions for RNA: ENST00000396595.7

LIMCH1-203, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 5,740 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-203ENST00000396595 LMOD3Q0VAK6 560 aa12.74□□□□□ -0.37
LIMCH1-203ENST00000396595 DHX57Q6P158 1386 aaKnown RBP12.74□□□□□ -0.37
LIMCH1-203ENST00000396595 ZBED9Q6R2W3 1325 aa12.74□□□□□ -0.37
LIMCH1-203ENST00000396595 MROH2BQ7Z745 1585 aa12.73□□□□□ -0.37
LIMCH1-203ENST00000396595 TRIM6-TRIM34B2RNG4 842 aa12.73□□□□□ -0.37
LIMCH1-203ENST00000396595 FANCIQ9NVI1 1328 aa12.73□□□□□ -0.37
LIMCH1-203ENST00000396595 CCDC146Q8IYE0 955 aa12.73□□□□□ -0.37
LIMCH1-203ENST00000396595 GSE1Q14687 1217 aa12.71□□□□□ -0.37
LIMCH1-203ENST00000396595 RSPH4AQ5TD94 716 aa12.71□□□□□ -0.37
LIMCH1-203ENST00000396595 PRKRIP1Q9H875 184 aaPredicted RBP12.71□□□□□ -0.37
LIMCH1-203ENST00000396595 RRP1P56182 461 aaKnown RBP12.71□□□□□ -0.38
LIMCH1-203ENST00000396595 SKOR2Q2VWA4 1001 aaPredicted RBP12.71□□□□□ -0.38
LIMCH1-203ENST00000396595 MLECQ14165 292 aa12.7□□□□□ -0.38
LIMCH1-203ENST00000396595 FOXD4L1Q9NU39 408 aa12.7□□□□□ -0.38
LIMCH1-203ENST00000396595 KIF3AQ9Y496 699 aa12.7□□□□□ -0.38
LIMCH1-203ENST00000396595 CGNL1Q0VF96 1302 aa12.69□□□□□ -0.38
LIMCH1-203ENST00000396595 HSP90B1P14625 803 aaKnown RBP12.69□□□□□ -0.38
LIMCH1-203ENST00000396595 KIF16BQ96L93 1317 aa12.68□□□□□ -0.38
LIMCH1-203ENST00000396595 CCDC18Q5T9S5 1454 aa12.68□□□□□ -0.38
LIMCH1-203ENST00000396595 E9PSI1 815 aa12.68□□□□□ -0.38
LIMCH1-203ENST00000396595 ISY1Q9ULR0 285 aaKnown RBP12.68□□□□□ -0.38
LIMCH1-203ENST00000396595 GORABQ5T7V8 394 aa12.67□□□□□ -0.38
LIMCH1-203ENST00000396595 EXOC6Q8TAG9 804 aa12.67□□□□□ -0.38
LIMCH1-203ENST00000396595 SLC4A10Q6U841 1118 aa12.67□□□□□ -0.38
LIMCH1-203ENST00000396595 DDX49Q9Y6V7 483 aaKnown RBP12.67□□□□□ -0.38
LIMCH1-203ENST00000396595 RAPGEF2Q9Y4G8 1499 aa12.67□□□□□ -0.38
LIMCH1-203ENST00000396595 SMARCA2P51531 1590 aa12.67□□□□□ -0.38
LIMCH1-203ENST00000396595 ST20-MTHFSA0A0A6YYL1 179 aa12.67□□□□□ -0.38
LIMCH1-203ENST00000396595 CLSTN1O94985 981 aa12.66□□□□□ -0.38
LIMCH1-203ENST00000396595 NOL8Q76FK4 1167 aaKnown RBP12.66□□□□□ -0.38
LIMCH1-203ENST00000396595 NOM1Q5C9Z4 860 aaKnown RBP12.66□□□□□ -0.38
LIMCH1-203ENST00000396595 FHOD3Q2V2M9 1422 aa12.66□□□□□ -0.38
LIMCH1-203ENST00000396595 ZKSCAN2Q63HK3 967 aa12.65□□□□□ -0.38
LIMCH1-203ENST00000396595 ATP6V1DQ9Y5K8 247 aa12.65□□□□□ -0.38
LIMCH1-203ENST00000396595 KIF3BO15066 747 aa12.65□□□□□ -0.38
LIMCH1-203ENST00000396595 PAK3O75914 559 aaPredicted RBP12.65□□□□□ -0.38
LIMCH1-203ENST00000396595 PANK3Q9H999 370 aa12.65□□□□□ -0.38
LIMCH1-203ENST00000396595 CRBNQ96SW2 442 aa12.65□□□□□ -0.38
LIMCH1-203ENST00000396595 NGEFQ8N5V2 710 aa12.64□□□□□ -0.39
LIMCH1-203ENST00000396595 TDRD9Q8NDG6 1382 aaKnown RBP12.64□□□□□ -0.39
LIMCH1-203ENST00000396595 CSB-PGBD3P0DP91 1061 aa12.63□□□□□ -0.39
LIMCH1-203ENST00000396595 SLC4A3P48751 1232 aa12.63□□□□□ -0.39
LIMCH1-203ENST00000396595 CHMP4CQ96CF2 233 aa12.63□□□□□ -0.39
LIMCH1-203ENST00000396595 PLIN1O60240 522 aa12.63□□□□□ -0.39
LIMCH1-203ENST00000396595 HNRNPMP52272 730 aaKnown RBP eCLIP12.63□□□□□ -0.39
LIMCH1-203ENST00000396595 PDS5BQ9NTI5 1447 aa12.63□□□□□ -0.39
LIMCH1-203ENST00000396595 CCDC144AA2RUR9 1427 aa12.63□□□□□ -0.39
LIMCH1-203ENST00000396595 SF3A1Q15459 793 aaKnown RBP12.63□□□□□ -0.39
LIMCH1-203ENST00000396595 TOP2AP11388 1531 aaKnown RBP12.62□□□□□ -0.39
LIMCH1-203ENST00000396595 TPM3P06753 285 aa12.62□□□□□ -0.39
LIMCH1-203ENST00000396595 TAF7LQ5H9L4 462 aa12.62□□□□□ -0.39
LIMCH1-203ENST00000396595 ANKRD45Q5TZF3 282 aa12.62□□□□□ -0.39
LIMCH1-203ENST00000396595 CHMP3Q9Y3E7 222 aa12.62□□□□□ -0.39
LIMCH1-203ENST00000396595 PATL2C9JE40 543 aaKnown RBP12.62□□□□□ -0.39
LIMCH1-203ENST00000396595 RRP7AQ9Y3A4 280 aaKnown RBP12.61□□□□□ -0.39
LIMCH1-203ENST00000396595 USP47Q96K76 1375 aa12.61□□□□□ -0.39
LIMCH1-203ENST00000396595 TEX35Q5T0J7 233 aa12.61□□□□□ -0.39
LIMCH1-203ENST00000396595 ZNF330Q9Y3S2 320 aaPredicted RBP12.61□□□□□ -0.39
LIMCH1-203ENST00000396595 FOXD4L5Q5VV16 416 aaPredicted RBP12.61□□□□□ -0.39
LIMCH1-203ENST00000396595 FOXD4L4Q8WXT5 416 aaPredicted RBP12.61□□□□□ -0.39
LIMCH1-203ENST00000396595 GPS2Q13227 327 aa12.6□□□□□ -0.39
LIMCH1-203ENST00000396595 CHMP5Q9NZZ3 219 aa12.6□□□□□ -0.39
LIMCH1-203ENST00000396595 COG6Q9Y2V7 657 aa12.6□□□□□ -0.39
LIMCH1-203ENST00000396595 BCL2L13Q9BXK5 485 aa12.59□□□□□ -0.39
LIMCH1-203ENST00000396595 GOLGA6L19H0YKK7 550 aa12.59□□□□□ -0.39
LIMCH1-203ENST00000396595 RASSF8Q8NHQ8 419 aa12.59□□□□□ -0.39
LIMCH1-203ENST00000396595 UACAQ9BZF9 1416 aa12.59□□□□□ -0.39
LIMCH1-203ENST00000396595 AMPHP49418 695 aa12.59□□□□□ -0.39
LIMCH1-203ENST00000396595 DDX19BQ9UMR2 479 aa12.59□□□□□ -0.39
LIMCH1-203ENST00000396595 REC8O95072 547 aa12.58□□□□□ -0.4
LIMCH1-203ENST00000396595 FAM13BQ9NYF5 915 aa12.58□□□□□ -0.4
LIMCH1-203ENST00000396595 STK11IPQ8N1F8 1099 aa12.58□□□□□ -0.4
LIMCH1-203ENST00000396595 TRAK1Q9UPV9 953 aa12.58□□□□□ -0.4
LIMCH1-203ENST00000396595 H3BQV1 296 aa12.58□□□□□ -0.4
LIMCH1-203ENST00000396595 IFFO2Q5TF58 517 aa12.58□□□□□ -0.4
LIMCH1-203ENST00000396595 ANO8Q9HCE9 1232 aaPredicted RBP12.58□□□□□ -0.4
LIMCH1-203ENST00000396595 BECN2A8MW95 431 aa12.57□□□□□ -0.4
LIMCH1-203ENST00000396595 RILPL2Q969X0 211 aa12.57□□□□□ -0.4
LIMCH1-203ENST00000396595 NGDNQ8NEJ9 315 aaKnown RBP12.57□□□□□ -0.4
LIMCH1-203ENST00000396595 APAF1O14727 1248 aa12.57□□□□□ -0.4
LIMCH1-203ENST00000396595 FAM184AQ8NB25 1140 aa12.57□□□□□ -0.4
LIMCH1-203ENST00000396595 SUGP2Q8IX01 1082 aaKnown RBP eCLIP12.56□□□□□ -0.4
LIMCH1-203ENST00000396595 WASHC2CQ9Y4E1 1318 aa12.56□□□□□ -0.4
LIMCH1-203ENST00000396595 RUFY2Q8WXA3 655 aa12.55□□□□□ -0.4
LIMCH1-203ENST00000396595 CCDC66A2RUB6 948 aa12.54□□□□□ -0.4
LIMCH1-203ENST00000396595 ELL2O00472 640 aaPredicted RBP12.54□□□□□ -0.4
LIMCH1-203ENST00000396595 RRP12Q5JTH9 1297 aaKnown RBP12.54□□□□□ -0.4
LIMCH1-203ENST00000396595 AAMPQ13685 434 aa12.54□□□□□ -0.4
LIMCH1-203ENST00000396595 EVC2Q86UK5 1308 aa12.54□□□□□ -0.4
LIMCH1-203ENST00000396595 DZIP1LQ8IYY4 767 aaKnown RBP12.54□□□□□ -0.4
LIMCH1-203ENST00000396595 API5Q9BZZ5 524 aaKnown RBP12.54□□□□□ -0.4
LIMCH1-203ENST00000396595 CREBRFQ8IUR6 639 aa12.53□□□□□ -0.4
LIMCH1-203ENST00000396595 TOMM22Q9NS69 142 aa12.53□□□□□ -0.4
LIMCH1-203ENST00000396595 DIAPH3Q9NSV4 1193 aa12.53□□□□□ -0.4
LIMCH1-203ENST00000396595 TSR1Q2NL82 804 aaKnown RBP12.53□□□□□ -0.4
LIMCH1-203ENST00000396595 MAP7D2Q96T17 732 aa12.53□□□□□ -0.4
LIMCH1-203ENST00000396595 PDE4CQ08493 712 aa12.53□□□□□ -0.4
LIMCH1-203ENST00000396595 EID1Q9Y6B2 187 aa12.53□□□□□ -0.4
LIMCH1-203ENST00000396595 TPM1P09493 284 aa12.52□□□□□ -0.4
LIMCH1-203ENST00000396595 NUCB2P80303 420 aa12.52□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 94.5 ms