RNA–Protein interactions for RNA: ENST00000396548.5

TRIM39-204, Transcript of tripartite motif containing 39, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene TRIM39, Length 3,198 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM39-204ENST00000396548 DIP2CQ9Y2E4 1556 aa18.63■□□□□ 0.57
TRIM39-204ENST00000396548 ANKRD30BQ9BXX2 1392 aa18.63■□□□□ 0.57
TRIM39-204ENST00000396548 SIN3AQ96ST3 1273 aa18.63■□□□□ 0.57
TRIM39-204ENST00000396548 NUP155O75694 1391 aa18.62■□□□□ 0.57
TRIM39-204ENST00000396548 RNF17Q9BXT8 1623 aaKnown RBP18.62■□□□□ 0.57
TRIM39-204ENST00000396548 RAPGEF3O95398 923 aa18.61■□□□□ 0.57
TRIM39-204ENST00000396548 PRDM15P57071 1507 aaPredicted RBP18.6■□□□□ 0.57
TRIM39-204ENST00000396548 SLC4A1APQ9BWU0 796 aaKnown RBP18.6■□□□□ 0.57
TRIM39-204ENST00000396548 A2MP01023 1474 aa18.6■□□□□ 0.57
TRIM39-204ENST00000396548 COL17A1Q9UMD9 1497 aaPredicted RBP18.58■□□□□ 0.56
TRIM39-204ENST00000396548 TIMELESSQ9UNS1 1208 aa18.58■□□□□ 0.56
TRIM39-204ENST00000396548 FOXD1Q16676 465 aa18.57■□□□□ 0.56
TRIM39-204ENST00000396548 RPRD2Q5VT52 1461 aaKnown RBP18.55■□□□□ 0.56
TRIM39-204ENST00000396548 YEATS2Q9ULM3 1422 aa18.54■□□□□ 0.56
TRIM39-204ENST00000396548 REREQ9P2R6 1566 aa18.54■□□□□ 0.56
TRIM39-204ENST00000396548 PKD2Q13563 968 aa18.54■□□□□ 0.56
TRIM39-204ENST00000396548 E9PCH4 1651 aa18.53■□□□□ 0.56
TRIM39-204ENST00000396548 TET3O43151 1660 aa18.53■□□□□ 0.56
TRIM39-204ENST00000396548 LMTK2Q8IWU2 1503 aa18.52■□□□□ 0.55
TRIM39-204ENST00000396548 NEUROD1Q13562 356 aa18.51■□□□□ 0.55
TRIM39-204ENST00000396548 ATP10AO60312 1499 aa18.51■□□□□ 0.55
TRIM39-204ENST00000396548 PLA2R1Q13018 1463 aa18.51■□□□□ 0.55
TRIM39-204ENST00000396548 SIGLEC1Q9BZZ2 1709 aa18.5■□□□□ 0.55
TRIM39-204ENST00000396548 CEP152O94986 1710 aa18.48■□□□□ 0.55
TRIM39-204ENST00000396548 ARHGEF40Q8TER5 1519 aa18.47■□□□□ 0.55
TRIM39-204ENST00000396548 KIF3BO15066 747 aa18.46■□□□□ 0.55
TRIM39-204ENST00000396548 GRWD1Q9BQ67 446 aaKnown RBP eCLIP18.46■□□□□ 0.551e-6■■■■□ 21.3
TRIM39-204ENST00000396548 MYT1LQ9UL68 1186 aa18.46■□□□□ 0.55
TRIM39-204ENST00000396548 EFCAB6Q5THR3 1501 aa18.45■□□□□ 0.54
TRIM39-204ENST00000396548 AGLP35573 1532 aa18.45■□□□□ 0.54
TRIM39-204ENST00000396548 PPP1R15AO75807 674 aaPredicted RBP18.45■□□□□ 0.54
TRIM39-204ENST00000396548 SPHKAPQ2M3C7 1700 aa18.44■□□□□ 0.54
TRIM39-204ENST00000396548 PTPRTO14522 1441 aa18.43■□□□□ 0.54
TRIM39-204ENST00000396548 TONSLQ96HA7 1378 aa18.43■□□□□ 0.54
TRIM39-204ENST00000396548 ZC3H13Q5T200 1668 aaKnown RBP18.43■□□□□ 0.54
TRIM39-204ENST00000396548 ABCC3O15438 1527 aa18.42■□□□□ 0.54
TRIM39-204ENST00000396548 TRPM2O94759 1503 aa18.42■□□□□ 0.54
TRIM39-204ENST00000396548 KANK1Q14678 1352 aa18.41■□□□□ 0.54
TRIM39-204ENST00000396548 CAMSAP1Q5T5Y3 1602 aa18.4■□□□□ 0.54
TRIM39-204ENST00000396548 L3MBTL2Q969R5 705 aa18.37■□□□□ 0.53
TRIM39-204ENST00000396548 CLTCL1P53675 1640 aa18.36■□□□□ 0.53
TRIM39-204ENST00000396548 NEURL4Q96JN8 1562 aa18.34■□□□□ 0.53
TRIM39-204ENST00000396548 CCDC144AA2RUR9 1427 aa18.34■□□□□ 0.53
TRIM39-204ENST00000396548 NPATQ14207 1427 aa18.33■□□□□ 0.52
TRIM39-204ENST00000396548 ARHGAP31Q2M1Z3 1444 aa18.33■□□□□ 0.52
TRIM39-204ENST00000396548 TRHP20396 242 aaPredicted RBP18.31■□□□□ 0.52
TRIM39-204ENST00000396548 SPATA31E1Q6ZUB1 1445 aa18.31■□□□□ 0.52
TRIM39-204ENST00000396548 GGT6Q6P531 493 aa18.31■□□□□ 0.52
TRIM39-204ENST00000396548 UHRF1BP1Q6BDS2 1440 aa18.3■□□□□ 0.52
TRIM39-204ENST00000396548 ZNF316A6NFI3 1004 aaPredicted RBP18.29■□□□□ 0.52
TRIM39-204ENST00000396548 PIK3C2BO00750 1634 aa18.29■□□□□ 0.52
TRIM39-204ENST00000396548 NOS1P29475 1434 aa18.28■□□□□ 0.52
TRIM39-204ENST00000396548 SYNMO15061 1565 aa18.27■□□□□ 0.52
TRIM39-204ENST00000396548 CLTCQ00610 1675 aaKnown RBP18.27■□□□□ 0.51
TRIM39-204ENST00000396548 UGGT1Q9NYU2 1555 aa18.27■□□□□ 0.51
TRIM39-204ENST00000396548 NBPF8Q3BBV2 869 aa18.26■□□□□ 0.51
TRIM39-204ENST00000396548 WASHC2CQ9Y4E1 1318 aa18.26■□□□□ 0.51
TRIM39-204ENST00000396548 PPP6R1Q9UPN7 881 aa18.26■□□□□ 0.51
TRIM39-204ENST00000396548 PREX1Q8TCU6 1659 aa18.26■□□□□ 0.51
TRIM39-204ENST00000396548 CNTLNQ9NXG0 1405 aa18.25■□□□□ 0.51
TRIM39-204ENST00000396548 KIF1BO60333 1816 aa18.25■□□□□ 0.51
TRIM39-204ENST00000396548 MROH2AA6NES4 1674 aa18.25■□□□□ 0.51
TRIM39-204ENST00000396548 IFT172Q9UG01 1749 aa18.24■□□□□ 0.51
TRIM39-204ENST00000396548 CFAP65Q6ZU64 1925 aaKnown RBP18.22■□□□□ 0.51
TRIM39-204ENST00000396548 ADGRB3O60242 1522 aa18.22■□□□□ 0.51
TRIM39-204ENST00000396548 TRPM1Q7Z4N2 1603 aa18.21■□□□□ 0.5
TRIM39-204ENST00000396548 RALGAPBQ86X10 1494 aa18.19■□□□□ 0.5
TRIM39-204ENST00000396548 PRAG1Q86YV5 1406 aa18.19■□□□□ 0.5
TRIM39-204ENST00000396548 MADDQ8WXG6 1647 aa18.18■□□□□ 0.5
TRIM39-204ENST00000396548 SPATA31D1Q6ZQQ2 1576 aa18.18■□□□□ 0.5
TRIM39-204ENST00000396548 ERVK-7P63135 1459 aa18.16■□□□□ 0.5
TRIM39-204ENST00000396548 DCAF11Q8TEB1 546 aa18.16■□□□□ 0.5
TRIM39-204ENST00000396548 PPLO60437 1756 aa18.15■□□□□ 0.5
TRIM39-204ENST00000396548 LAMC1P11047 1609 aa18.15■□□□□ 0.5
TRIM39-204ENST00000396548 MYOM2P54296 1465 aa18.13■□□□□ 0.49
TRIM39-204ENST00000396548 TMEM131LA2VDJ0 1609 aa18.13■□□□□ 0.49
TRIM39-204ENST00000396548 NRXN1Q9ULB1 1477 aa18.12■□□□□ 0.49
TRIM39-204ENST00000396548 RGL3Q3MIN7 710 aa18.12■□□□□ 0.49
TRIM39-204ENST00000396548 MYO5BQ9ULV0 1848 aa18.11■□□□□ 0.49
TRIM39-204ENST00000396548 KIAA1210Q9ULL0 1709 aa18.11■□□□□ 0.49
TRIM39-204ENST00000396548 STAC3Q96MF2 364 aa18.1■□□□□ 0.49
TRIM39-204ENST00000396548 GPRASP1Q5JY77 1395 aa18.09■□□□□ 0.49
TRIM39-204ENST00000396548 FER1L4A9Z1Z3 1794 aa18.09■□□□□ 0.49
TRIM39-204ENST00000396548 KDM2AQ9Y2K7 1162 aa18.09■□□□□ 0.49
TRIM39-204ENST00000396548 ZMYM3Q14202 1370 aa18.09■□□□□ 0.49
TRIM39-204ENST00000396548 FBXO31Q5XUX0 539 aaPredicted RBP18.08■□□□□ 0.48
TRIM39-204ENST00000396548 NEXMIFQ5QGS0 1516 aa18.08■□□□□ 0.48
TRIM39-204ENST00000396548 MLECQ14165 292 aa18.07■□□□□ 0.48
TRIM39-204ENST00000396548 POLR1AO95602 1720 aaPredicted RBP18.07■□□□□ 0.48
TRIM39-204ENST00000396548 SLC52A1Q9NWF4 448 aa18.07■□□□□ 0.48
TRIM39-204ENST00000396548 C3P01024 1663 aa18.07■□□□□ 0.48
TRIM39-204ENST00000396548 HSPA5P11021 654 aaKnown RBP18.06■□□□□ 0.48
TRIM39-204ENST00000396548 IDI1Q13907 227 aa18.05■□□□□ 0.48
TRIM39-204ENST00000396548 KDM5AP29375 1690 aaKnown RBP18.04■□□□□ 0.48
TRIM39-204ENST00000396548 ARID4BQ4LE39 1312 aaPredicted RBP18.04■□□□□ 0.48
TRIM39-204ENST00000396548 EIF4G2P78344 907 aaKnown RBP eCLIP18.03■□□□□ 0.48
TRIM39-204ENST00000396548 IQGAP1P46940 1657 aa18.03■□□□□ 0.48
TRIM39-204ENST00000396548 ZNF326Q5BKZ1 582 aaKnown RBP18.03■□□□□ 0.48
TRIM39-204ENST00000396548 DIEXFQ68CQ4 756 aaKnown RBP18.03■□□□□ 0.48
TRIM39-204ENST00000396548 HIRIP3Q9BW71 556 aaPredicted RBP18.03■□□□□ 0.48
Retrieved 100 of 20,778 RNA–protein pairs in 18.3 ms