RNA–Protein interactions for RNA: ENST00000396355.5

NDE1-202, Transcript of nudE neurodevelopment protein 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene NDE1, Length 3,936 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NDE1-202ENST00000396355 SLC4A3P48751 1232 aa11.16□□□□□ -0.62
NDE1-202ENST00000396355 CEBPAP49715 358 aaPredicted RBP11.16□□□□□ -0.62
NDE1-202ENST00000396355 EFCAB2Q5VUJ9 269 aa11.16□□□□□ -0.62
NDE1-202ENST00000396355 SHROOM2Q13796 1616 aa11.16□□□□□ -0.62
NDE1-202ENST00000396355 TRIM44Q96DX7 344 aaPredicted RBP11.16□□□□□ -0.62
NDE1-202ENST00000396355 POGZQ7Z3K3 1410 aa11.15□□□□□ -0.63
NDE1-202ENST00000396355 ZBTB7CA1YPR0 619 aa11.15□□□□□ -0.63
NDE1-202ENST00000396355 COL17A1Q9UMD9 1497 aaPredicted RBP11.14□□□□□ -0.63
NDE1-202ENST00000396355 RRP7BPQ9NSQ0 103 aa11.14□□□□□ -0.63
NDE1-202ENST00000396355 CHIC2Q9UKJ5 165 aa11.14□□□□□ -0.63
NDE1-202ENST00000396355 KIF13AQ9H1H9 1805 aa11.14□□□□□ -0.63
NDE1-202ENST00000396355 PAXIP1Q6ZW49 1069 aaPredicted RBP11.14□□□□□ -0.63
NDE1-202ENST00000396355 DMRT2Q9Y5R5 561 aa11.14□□□□□ -0.63
NDE1-202ENST00000396355 GZF1Q9H116 711 aaPredicted RBP11.11□□□□□ -0.63
NDE1-202ENST00000396355 DISP1Q96F81 1524 aa11.11□□□□□ -0.63
NDE1-202ENST00000396355 CERKQ8TCT0 537 aa11.1□□□□□ -0.63
NDE1-202ENST00000396355 KIAA0556O60303 1618 aa11.1□□□□□ -0.63
NDE1-202ENST00000396355 AKNAQ7Z591 1439 aa11.09□□□□□ -0.63
NDE1-202ENST00000396355 BBXQ8WY36 941 aaPredicted RBP11.09□□□□□ -0.63
NDE1-202ENST00000396355 FRAT1Q92837 279 aaPredicted RBP11.09□□□□□ -0.63
NDE1-202ENST00000396355 GGT6Q6P531 493 aa11.08□□□□□ -0.64
NDE1-202ENST00000396355 UHRF1BP1LA0JNW5 1464 aa11.08□□□□□ -0.64
NDE1-202ENST00000396355 RGS3P49796 1198 aa11.08□□□□□ -0.64
NDE1-202ENST00000396355 NUP153P49790 1475 aaKnown RBP11.08□□□□□ -0.64
NDE1-202ENST00000396355 MIA2Q96PC5 1412 aa11.08□□□□□ -0.64
NDE1-202ENST00000396355 PLCD3Q8N3E9 789 aa11.07□□□□□ -0.64
NDE1-202ENST00000396355 CANXP27824 592 aaKnown RBP11.07□□□□□ -0.64
NDE1-202ENST00000396355 FOXD1Q16676 465 aa11.07□□□□□ -0.64
NDE1-202ENST00000396355 AFAP1Q8N556 730 aa11.07□□□□□ -0.64
NDE1-202ENST00000396355 HECW2Q9P2P5 1572 aa11.07□□□□□ -0.64
NDE1-202ENST00000396355 C11orf95C9JLR9 678 aaPredicted RBP11.07□□□□□ -0.64
NDE1-202ENST00000396355 CCER2I3L3R5 266 aa11.07□□□□□ -0.64
NDE1-202ENST00000396355 DNMT1P26358 1616 aaKnown RBP11.06□□□□□ -0.64
NDE1-202ENST00000396355 PHF23Q9BUL5 403 aaPredicted RBP11.06□□□□□ -0.64
NDE1-202ENST00000396355 WASHC2AQ641Q2 1341 aa11.06□□□□□ -0.64
NDE1-202ENST00000396355 ZNF644Q9H582 1327 aaPredicted RBP11.06□□□□□ -0.64
NDE1-202ENST00000396355 LMTK3Q96Q04 1460 aa11.05□□□□□ -0.64
NDE1-202ENST00000396355 PIP4K2BP78356 416 aa11.05□□□□□ -0.64
NDE1-202ENST00000396355 ANP32BQ92688 251 aaKnown RBP11.05□□□□□ -0.64
NDE1-202ENST00000396355 UBAP1LF5GYI3 381 aa11.05□□□□□ -0.64
NDE1-202ENST00000396355 DAPK1P53355 1430 aa11.05□□□□□ -0.64
NDE1-202ENST00000396355 RAPGEF6Q8TEU7 1601 aa11.05□□□□□ -0.64
NDE1-202ENST00000396355 CHMP4BQ9H444 224 aaKnown RBP11.04□□□□□ -0.64
NDE1-202ENST00000396355 FAM13BQ9NYF5 915 aa11.04□□□□□ -0.64
NDE1-202ENST00000396355 MPHOSPH9Q99550 1183 aa11.04□□□□□ -0.64
NDE1-202ENST00000396355 ABCC5O15440 1437 aa11.04□□□□□ -0.64
NDE1-202ENST00000396355 FGD1P98174 961 aa11.03□□□□□ -0.64
NDE1-202ENST00000396355 HSPA5P11021 654 aaKnown RBP11.03□□□□□ -0.64
NDE1-202ENST00000396355 ZNF326Q5BKZ1 582 aaKnown RBP11.03□□□□□ -0.64
NDE1-202ENST00000396355 SCAPERQ9BY12 1400 aa11.03□□□□□ -0.64
NDE1-202ENST00000396355 ATP10BO94823 1461 aa11.02□□□□□ -0.65
NDE1-202ENST00000396355 ZHX1Q9UKY1 873 aaPredicted RBP11.02□□□□□ -0.65
NDE1-202ENST00000396355 KIF14Q15058 1648 aa11.01□□□□□ -0.65
NDE1-202ENST00000396355 PTPRMP28827 1452 aa11.01□□□□□ -0.65
NDE1-202ENST00000396355 NCLP19338 710 aaKnown RBP11.01□□□□□ -0.65
NDE1-202ENST00000396355 L3MBTL2Q969R5 705 aa11.01□□□□□ -0.65
NDE1-202ENST00000396355 DDRGK1Q96HY6 314 aa11.01□□□□□ -0.65
NDE1-202ENST00000396355 RPRD2Q5VT52 1461 aaKnown RBP11□□□□□ -0.65
NDE1-202ENST00000396355 ANKRD30BQ9BXX2 1392 aa11□□□□□ -0.65
NDE1-202ENST00000396355 ZCCHC11Q5TAX3 1644 aaKnown RBP11□□□□□ -0.65
NDE1-202ENST00000396355 ROCK1Q13464 1354 aa10.99□□□□□ -0.65
NDE1-202ENST00000396355 SPRYD3Q8NCJ5 442 aa10.99□□□□□ -0.65
NDE1-202ENST00000396355 GLI2P10070 1586 aa10.99□□□□□ -0.65
NDE1-202ENST00000396355 NBPF8Q3BBV2 869 aa10.99□□□□□ -0.65
NDE1-202ENST00000396355 CFDP1Q9UEE9 299 aaPredicted RBP10.99□□□□□ -0.65
NDE1-202ENST00000396355 RRP9O43818 475 aaKnown RBP10.98□□□□□ -0.65
NDE1-202ENST00000396355 CCDC184Q52MB2 194 aa10.98□□□□□ -0.65
NDE1-202ENST00000396355 MRS2Q9HD23 443 aa10.98□□□□□ -0.65
NDE1-202ENST00000396355 PRDM10Q9NQV6 1147 aa10.98□□□□□ -0.65
NDE1-202ENST00000396355 FANCAO15360 1455 aa10.98□□□□□ -0.65
NDE1-202ENST00000396355 SLKQ9H2G2 1235 aaPredicted RBP10.98□□□□□ -0.65
NDE1-202ENST00000396355 STAG3Q9UJ98 1225 aa10.98□□□□□ -0.65
NDE1-202ENST00000396355 AAMPQ13685 434 aa10.98□□□□□ -0.65
NDE1-202ENST00000396355 DNTTIP2Q5QJE6 756 aaKnown RBP10.98□□□□□ -0.65
NDE1-202ENST00000396355 CAMSAP2Q08AD1 1489 aa10.97□□□□□ -0.65
NDE1-202ENST00000396355 CROCC2H7BZ55 1655 aa10.97□□□□□ -0.65
NDE1-202ENST00000396355 PZPP20742 1482 aa10.97□□□□□ -0.65
NDE1-202ENST00000396355 NFKBIBQ15653 356 aa10.97□□□□□ -0.65
NDE1-202ENST00000396355 NCOA1Q15788 1441 aa10.97□□□□□ -0.65
NDE1-202ENST00000396355 POLR1AO95602 1720 aaPredicted RBP10.97□□□□□ -0.65
NDE1-202ENST00000396355 FAM43AQ8N2R8 423 aa10.96□□□□□ -0.65
NDE1-202ENST00000396355 HAP1P54257 671 aaPredicted RBP10.96□□□□□ -0.65
NDE1-202ENST00000396355 CNTLNQ9NXG0 1405 aa10.96□□□□□ -0.66
NDE1-202ENST00000396355 ADGBQ8N7X0 1667 aa10.96□□□□□ -0.66
NDE1-202ENST00000396355 SPATA31E1Q6ZUB1 1445 aa10.95□□□□□ -0.66
NDE1-202ENST00000396355 SPAG9O60271 1321 aaKnown RBP10.95□□□□□ -0.66
NDE1-202ENST00000396355 HNRNPMP52272 730 aaKnown RBP eCLIP10.95□□□□□ -0.66
NDE1-202ENST00000396355 EIF4G2P78344 907 aaKnown RBP eCLIP10.95□□□□□ -0.66
NDE1-202ENST00000396355 ITSN2Q9NZM3 1697 aa10.95□□□□□ -0.66
NDE1-202ENST00000396355 TROQ12816 1431 aaPredicted RBP10.95□□□□□ -0.66
NDE1-202ENST00000396355 GPATCH8Q9UKJ3 1502 aaKnown RBP10.95□□□□□ -0.66
NDE1-202ENST00000396355 NAP1L2Q9ULW6 460 aaPredicted RBP10.95□□□□□ -0.66
NDE1-202ENST00000396355 L1TD1Q5T7N2 865 aaKnown RBP10.94□□□□□ -0.66
NDE1-202ENST00000396355 CCDC7Q96M83 1385 aa10.94□□□□□ -0.66
NDE1-202ENST00000396355 CDC42BPAQ5VT25 1732 aa10.93□□□□□ -0.66
NDE1-202ENST00000396355 UHRF1BP1Q6BDS2 1440 aa10.93□□□□□ -0.66
NDE1-202ENST00000396355 VGLL3A8MV65 326 aa10.92□□□□□ -0.66
NDE1-202ENST00000396355 NEO1Q92859 1461 aa10.92□□□□□ -0.66
NDE1-202ENST00000396355 MBD5Q9P267 1494 aa10.92□□□□□ -0.66
NDE1-202ENST00000396355 KLHL34Q8N239 644 aa10.92□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 32.7 ms