RNA–Protein interactions for RNA: ENST00000395793.7

CXCL12-204, Transcript of C-X-C motif chemokine ligand 12, humanhuman

TSL 5 BASIC

Gene CXCL12, Length 665 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CXCL12-204ENST00000395793 FAM135AQ9P2D6 1515 aa28.47■■■□□ 2.15
CXCL12-204ENST00000395793 TSPY4P0CV99 314 aa28.45■■■□□ 2.14
CXCL12-204ENST00000395793 TSPY10P0CW01 314 aa28.45■■■□□ 2.14
CXCL12-204ENST00000395793 RNF17Q9BXT8 1623 aaKnown RBP28.44■■■□□ 2.14
CXCL12-204ENST00000395793 CROCC2H7BZ55 1655 aa28.42■■■□□ 2.14
CXCL12-204ENST00000395793 PTPN23Q9H3S7 1636 aa28.41■■■□□ 2.14
CXCL12-204ENST00000395793 PZPP20742 1482 aa28.4■■■□□ 2.14
CXCL12-204ENST00000395793 EIF2AK4Q9P2K8 1649 aaKnown RBP28.4■■■□□ 2.14
CXCL12-204ENST00000395793 MROH1Q8NDA8 1641 aa28.39■■■□□ 2.13
CXCL12-204ENST00000395793 DNMT1P26358 1616 aaKnown RBP28.38■■■□□ 2.13
CXCL12-204ENST00000395793 LTBP4Q8N2S1 1624 aa28.38■■■□□ 2.13
CXCL12-204ENST00000395793 PLA2R1Q13018 1463 aa28.38■■■□□ 2.13
CXCL12-204ENST00000395793 FBXO31Q5XUX0 539 aaPredicted RBP28.37■■■□□ 2.13
CXCL12-204ENST00000395793 A2ML1A8K2U0 1454 aa28.37■■■□□ 2.13
CXCL12-204ENST00000395793 NCKAP5LQ9HCH0 1330 aa28.36■■■□□ 2.13
CXCL12-204ENST00000395793 TCOF1Q13428 1488 aaKnown RBP28.35■■■□□ 2.13
CXCL12-204ENST00000395793 ABCC5O15440 1437 aa28.35■■■□□ 2.13
CXCL12-204ENST00000395793 ABCC3O15438 1527 aa28.34■■■□□ 2.13
CXCL12-204ENST00000395793 APLP2Q06481 763 aa28.34■■■□□ 2.13
CXCL12-204ENST00000395793 ZC3H13Q5T200 1668 aaKnown RBP28.34■■■□□ 2.13
CXCL12-204ENST00000395793 WASHC2CQ9Y4E1 1318 aa28.34■■■□□ 2.13
CXCL12-204ENST00000395793 TNRQ92752 1358 aa28.34■■■□□ 2.13
CXCL12-204ENST00000395793 FGD6Q6ZV73 1430 aa28.33■■■□□ 2.13
CXCL12-204ENST00000395793 SHANK2Q9UPX8 1470 aa28.33■■■□□ 2.13
CXCL12-204ENST00000395793 DUOX2Q9NRD8 1548 aa28.32■■■□□ 2.12
CXCL12-204ENST00000395793 CEP152O94986 1710 aa28.32■■■□□ 2.12
CXCL12-204ENST00000395793 DAPK1P53355 1430 aa28.28■■■□□ 2.12
CXCL12-204ENST00000395793 POLR1AO95602 1720 aaPredicted RBP28.26■■■□□ 2.12
CXCL12-204ENST00000395793 KIF15Q9NS87 1388 aa28.25■■■□□ 2.11
CXCL12-204ENST00000395793 PKD2Q13563 968 aa28.25■■■□□ 2.11
CXCL12-204ENST00000395793 NEURL4Q96JN8 1562 aa28.24■■■□□ 2.11
CXCL12-204ENST00000395793 SPATA31D1Q6ZQQ2 1576 aa28.24■■■□□ 2.11
CXCL12-204ENST00000395793 PRDM15P57071 1507 aaPredicted RBP28.23■■■□□ 2.11
CXCL12-204ENST00000395793 NLRP1Q9C000 1473 aa28.21■■■□□ 2.11
CXCL12-204ENST00000395793 ZNF335Q9H4Z2 1342 aaPredicted RBP28.2■■■□□ 2.11
CXCL12-204ENST00000395793 ERBINQ96RT1 1412 aa28.2■■■□□ 2.11
CXCL12-204ENST00000395793 DEPDC5O75140 1603 aa28.2■■■□□ 2.1
CXCL12-204ENST00000395793 ERVK-7P63135 1459 aa28.2■■■□□ 2.1
CXCL12-204ENST00000395793 RRP7BPQ9NSQ0 103 aa28.19■■■□□ 2.1
CXCL12-204ENST00000395793 CFAP65Q6ZU64 1925 aaKnown RBP28.19■■■□□ 2.1
CXCL12-204ENST00000395793 UGGT1Q9NYU2 1555 aa28.18■■■□□ 2.1
CXCL12-204ENST00000395793 IQSEC2Q5JU85 1478 aa28.17■■■□□ 2.1
CXCL12-204ENST00000395793 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP28.14■■■□□ 2.1
CXCL12-204ENST00000395793 CHIC2Q9UKJ5 165 aa28.12■■■□□ 2.09
CXCL12-204ENST00000395793 ADGRL2O95490 1459 aa28.09■■■□□ 2.09
CXCL12-204ENST00000395793 ANKRD30AQ9BXX3 1397 aa28.09■■■□□ 2.09
CXCL12-204ENST00000395793 UBR1Q8IWV7 1749 aa28.09■■■□□ 2.09
CXCL12-204ENST00000395793 ARHGAP31Q2M1Z3 1444 aa28.08■■■□□ 2.09
CXCL12-204ENST00000395793 VWDEQ8N2E2 1590 aa28.07■■■□□ 2.08
CXCL12-204ENST00000395793 THEMISQ8N1K5 641 aaPredicted RBP28.07■■■□□ 2.08
CXCL12-204ENST00000395793 MED14O60244 1454 aa28.05■■■□□ 2.08
CXCL12-204ENST00000395793 GRWD1Q9BQ67 446 aaKnown RBP eCLIP28.04■■■□□ 2.08
CXCL12-204ENST00000395793 ANKLE2Q86XL3 938 aa28.03■■■□□ 2.08
CXCL12-204ENST00000395793 IQGAP1P46940 1657 aa28.03■■■□□ 2.08
CXCL12-204ENST00000395793 LMTK2Q8IWU2 1503 aa28.02■■■□□ 2.08
CXCL12-204ENST00000395793 NPHP4O75161 1426 aaPredicted RBP28.02■■■□□ 2.08
CXCL12-204ENST00000395793 FAM50AQ14320 339 aaKnown RBP28.02■■■□□ 2.08
CXCL12-204ENST00000395793 PIK3C2BO00750 1634 aa27.99■■■□□ 2.07
CXCL12-204ENST00000395793 KANK1Q14678 1352 aa27.98■■■□□ 2.07
CXCL12-204ENST00000395793 CPS1P31327 1500 aa27.96■■■□□ 2.07
CXCL12-204ENST00000395793 EFCAB6Q5THR3 1501 aa27.96■■■□□ 2.07
CXCL12-204ENST00000395793 STRCP1A6NGW2 1772 aa27.96■■■□□ 2.07
CXCL12-204ENST00000395793 SYNMO15061 1565 aa27.95■■■□□ 2.07
CXCL12-204ENST00000395793 ARHGAP23Q9P227 1491 aa27.95■■■□□ 2.06
CXCL12-204ENST00000395793 SLIT1O75093 1534 aa27.93■■■□□ 2.06
CXCL12-204ENST00000395793 ANKRD50Q9ULJ7 1429 aa27.92■■■□□ 2.06
CXCL12-204ENST00000395793 UBAP1LF5GYI3 381 aa27.91■■■□□ 2.06
CXCL12-204ENST00000395793 SCAF11Q99590 1463 aaKnown RBP27.9■■■□□ 2.06
CXCL12-204ENST00000395793 NOS1P29475 1434 aa27.88■■■□□ 2.05
CXCL12-204ENST00000395793 KDM5AP29375 1690 aaKnown RBP27.87■■■□□ 2.05
CXCL12-204ENST00000395793 UNC13BO14795 1591 aa27.87■■■□□ 2.05
CXCL12-204ENST00000395793 LTKP29376 864 aa27.87■■■□□ 2.05
CXCL12-204ENST00000395793 TET3O43151 1660 aa27.85■■■□□ 2.05
CXCL12-204ENST00000395793 PPARGC1BQ86YN6 1023 aaKnown RBP27.84■■■□□ 2.05
CXCL12-204ENST00000395793 ALKQ9UM73 1620 aa27.82■■■□□ 2.04
CXCL12-204ENST00000395793 GCC2Q8IWJ2 1684 aa27.82■■■□□ 2.04
CXCL12-204ENST00000395793 IDI1Q13907 227 aa27.81■■■□□ 2.04
CXCL12-204ENST00000395793 TMEM2Q9UHN6 1383 aa27.81■■■□□ 2.04
CXCL12-204ENST00000395793 ADGRB3O60242 1522 aa27.81■■■□□ 2.04
CXCL12-204ENST00000395793 TXNDC2Q86VQ3 553 aa27.8■■■□□ 2.04
CXCL12-204ENST00000395793 ROCK1Q13464 1354 aa27.8■■■□□ 2.04
CXCL12-204ENST00000395793 LRRC7Q96NW7 1537 aa27.79■■■□□ 2.04
CXCL12-204ENST00000395793 RPRD2Q5VT52 1461 aaKnown RBP27.79■■■□□ 2.04
CXCL12-204ENST00000395793 MYO5BQ9ULV0 1848 aa27.77■■■□□ 2.04
CXCL12-204ENST00000395793 E9PCH4 1651 aa27.75■■■□□ 2.03
CXCL12-204ENST00000395793 IQGAP3Q86VI3 1631 aa27.74■■■□□ 2.03
CXCL12-204ENST00000395793 XIRP1Q702N8 1843 aaKnown RBP27.74■■■□□ 2.03
CXCL12-204ENST00000395793 DISP3Q9P2K9 1392 aa27.73■■■□□ 2.03
CXCL12-204ENST00000395793 STAG3Q9UJ98 1225 aa27.73■■■□□ 2.03
CXCL12-204ENST00000395793 EID1Q9Y6B2 187 aa27.72■■■□□ 2.03
CXCL12-204ENST00000395793 ITGAEP38570 1179 aa27.71■■■□□ 2.03
CXCL12-204ENST00000395793 PIP4K2BP78356 416 aa27.69■■■□□ 2.02
CXCL12-204ENST00000395793 TMEM131LA2VDJ0 1609 aa27.68■■■□□ 2.02
CXCL12-204ENST00000395793 TOM1O60784 492 aa27.68■■■□□ 2.02
CXCL12-204ENST00000395793 SLC52A1Q9NWF4 448 aa27.68■■■□□ 2.02
CXCL12-204ENST00000395793 SCAF1Q9H7N4 1312 aaKnown RBP27.67■■■□□ 2.02
CXCL12-204ENST00000395793 ZFYVE9O95405 1425 aa27.65■■■□□ 2.02
CXCL12-204ENST00000395793 HSPA1LP34931 641 aa27.64■■■□□ 2.02
CXCL12-204ENST00000395793 ILDR2Q71H61 639 aa27.63■■■□□ 2.01
CXCL12-204ENST00000395793 RRBP1Q9P2E9 1410 aaKnown RBP27.63■■■□□ 2.01
Retrieved 100 of 20,778 RNA–protein pairs in 70.8 ms