RNA–Protein interactions for RNA: ENST00000393368.2

HMGB3P1-201, Transcript of high mobility group box 3 pseudogene 1, humanhuman

BASIC

Gene HMGB3P1, Length 573 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3P1-201ENST00000393368 CLTCQ00610 1675 aaKnown RBP11.84□□□□□ -0.51
HMGB3P1-201ENST00000393368 KIF15Q9NS87 1388 aa11.83□□□□□ -0.52
HMGB3P1-201ENST00000393368 HSPA2P54652 639 aa11.82□□□□□ -0.52
HMGB3P1-201ENST00000393368 PTPRKQ15262 1439 aa11.82□□□□□ -0.52
HMGB3P1-201ENST00000393368 CNTLNQ9NXG0 1405 aa11.82□□□□□ -0.52
HMGB3P1-201ENST00000393368 ZMYM3Q14202 1370 aa11.81□□□□□ -0.52
HMGB3P1-201ENST00000393368 ITGAEP38570 1179 aa11.81□□□□□ -0.52
HMGB3P1-201ENST00000393368 DUOX2Q9NRD8 1548 aa11.81□□□□□ -0.52
HMGB3P1-201ENST00000393368 KDM5DQ9BY66 1539 aa11.79□□□□□ -0.52
HMGB3P1-201ENST00000393368 ANKRD30AQ9BXX3 1397 aa11.79□□□□□ -0.52
HMGB3P1-201ENST00000393368 MROH1Q8NDA8 1641 aa11.78□□□□□ -0.52
HMGB3P1-201ENST00000393368 NCOA1Q15788 1441 aa11.78□□□□□ -0.52
HMGB3P1-201ENST00000393368 MROH2AA6NES4 1674 aa11.78□□□□□ -0.52
HMGB3P1-201ENST00000393368 WASHC2CQ9Y4E1 1318 aa11.78□□□□□ -0.52
HMGB3P1-201ENST00000393368 RNF17Q9BXT8 1623 aaKnown RBP11.78□□□□□ -0.52
HMGB3P1-201ENST00000393368 EIF2AK4Q9P2K8 1649 aaKnown RBP11.78□□□□□ -0.52
HMGB3P1-201ENST00000393368 ADGRL2O95490 1459 aa11.77□□□□□ -0.52
HMGB3P1-201ENST00000393368 PREX1Q8TCU6 1659 aa11.77□□□□□ -0.53
HMGB3P1-201ENST00000393368 UHRF1BP1Q6BDS2 1440 aa11.77□□□□□ -0.53
HMGB3P1-201ENST00000393368 ERBINQ96RT1 1412 aa11.77□□□□□ -0.53
HMGB3P1-201ENST00000393368 FBXO31Q5XUX0 539 aaPredicted RBP11.76□□□□□ -0.53
HMGB3P1-201ENST00000393368 GRWD1Q9BQ67 446 aaKnown RBP eCLIP11.76□□□□□ -0.53
HMGB3P1-201ENST00000393368 ABCC3O15438 1527 aa11.76□□□□□ -0.53
HMGB3P1-201ENST00000393368 RRBP1Q9P2E9 1410 aaKnown RBP11.75□□□□□ -0.53
HMGB3P1-201ENST00000393368 NPATQ14207 1427 aa11.74□□□□□ -0.53
HMGB3P1-201ENST00000393368 CEP152O94986 1710 aa11.73□□□□□ -0.53
HMGB3P1-201ENST00000393368 PZPP20742 1482 aa11.73□□□□□ -0.53
HMGB3P1-201ENST00000393368 PRDM15P57071 1507 aaPredicted RBP11.73□□□□□ -0.53
HMGB3P1-201ENST00000393368 MYO3AQ8NEV4 1616 aa11.72□□□□□ -0.53
HMGB3P1-201ENST00000393368 FAM135AQ9P2D6 1515 aa11.72□□□□□ -0.53
HMGB3P1-201ENST00000393368 ANKRD50Q9ULJ7 1429 aa11.72□□□□□ -0.53
HMGB3P1-201ENST00000393368 DEPDC5O75140 1603 aa11.71□□□□□ -0.53
HMGB3P1-201ENST00000393368 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP11.71□□□□□ -0.53
HMGB3P1-201ENST00000393368 ZC3H13Q5T200 1668 aaKnown RBP11.71□□□□□ -0.54
HMGB3P1-201ENST00000393368 CAMSAP1Q5T5Y3 1602 aa11.71□□□□□ -0.54
HMGB3P1-201ENST00000393368 TNRQ92752 1358 aa11.7□□□□□ -0.54
HMGB3P1-201ENST00000393368 ROCK1Q13464 1354 aa11.69□□□□□ -0.54
HMGB3P1-201ENST00000393368 CEP170BQ9Y4F5 1589 aaPredicted RBP11.69□□□□□ -0.54
HMGB3P1-201ENST00000393368 ERVK-7P63135 1459 aa11.68□□□□□ -0.54
HMGB3P1-201ENST00000393368 KANK1Q14678 1352 aa11.67□□□□□ -0.54
HMGB3P1-201ENST00000393368 VWDEQ8N2E2 1590 aa11.67□□□□□ -0.54
HMGB3P1-201ENST00000393368 ZNF142P52746 1687 aaPredicted RBP11.66□□□□□ -0.54
HMGB3P1-201ENST00000393368 SPATA31D1Q6ZQQ2 1576 aa11.66□□□□□ -0.54
HMGB3P1-201ENST00000393368 A2ML1A8K2U0 1454 aa11.65□□□□□ -0.54
HMGB3P1-201ENST00000393368 STRCQ7RTU9 1775 aa11.65□□□□□ -0.54
HMGB3P1-201ENST00000393368 UNC13BO14795 1591 aa11.65□□□□□ -0.54
HMGB3P1-201ENST00000393368 LMTK2Q8IWU2 1503 aa11.65□□□□□ -0.55
HMGB3P1-201ENST00000393368 NCKAP5LQ9HCH0 1330 aa11.64□□□□□ -0.55
HMGB3P1-201ENST00000393368 EFCAB6Q5THR3 1501 aa11.64□□□□□ -0.55
HMGB3P1-201ENST00000393368 SETD1BQ9UPS6 1966 aaKnown RBP11.63□□□□□ -0.55
HMGB3P1-201ENST00000393368 ARHGAP31Q2M1Z3 1444 aa11.63□□□□□ -0.55
HMGB3P1-201ENST00000393368 NAIPQ13075 1403 aa11.62□□□□□ -0.55
HMGB3P1-201ENST00000393368 NLRP1Q9C000 1473 aa11.62□□□□□ -0.55
HMGB3P1-201ENST00000393368 NUP155O75694 1391 aa11.61□□□□□ -0.55
HMGB3P1-201ENST00000393368 UGGT1Q9NYU2 1555 aa11.61□□□□□ -0.55
HMGB3P1-201ENST00000393368 SYNMO15061 1565 aa11.6□□□□□ -0.55
HMGB3P1-201ENST00000393368 TET3O43151 1660 aa11.59□□□□□ -0.55
HMGB3P1-201ENST00000393368 GCC2Q8IWJ2 1684 aa11.59□□□□□ -0.55
HMGB3P1-201ENST00000393368 PLA2R1Q13018 1463 aa11.59□□□□□ -0.55
HMGB3P1-201ENST00000393368 IQGAP3Q86VI3 1631 aa11.59□□□□□ -0.55
HMGB3P1-201ENST00000393368 HFM1A2PYH4 1435 aa11.59□□□□□ -0.55
HMGB3P1-201ENST00000393368 CFAP65Q6ZU64 1925 aaKnown RBP11.58□□□□□ -0.55
HMGB3P1-201ENST00000393368 NOS1P29475 1434 aa11.58□□□□□ -0.56
HMGB3P1-201ENST00000393368 PIK3C2BO00750 1634 aa11.57□□□□□ -0.56
HMGB3P1-201ENST00000393368 E9PCH4 1651 aa11.57□□□□□ -0.56
HMGB3P1-201ENST00000393368 PTPRTO14522 1441 aa11.57□□□□□ -0.56
HMGB3P1-201ENST00000393368 NEURL4Q96JN8 1562 aa11.57□□□□□ -0.56
HMGB3P1-201ENST00000393368 IDI1Q13907 227 aa11.56□□□□□ -0.56
HMGB3P1-201ENST00000393368 UBR1Q8IWV7 1749 aa11.56□□□□□ -0.56
HMGB3P1-201ENST00000393368 THEMISQ8N1K5 641 aaPredicted RBP11.56□□□□□ -0.56
HMGB3P1-201ENST00000393368 DMRT2Q9Y5R5 561 aa11.56□□□□□ -0.56
HMGB3P1-201ENST00000393368 RPRD2Q5VT52 1461 aaKnown RBP11.56□□□□□ -0.56
HMGB3P1-201ENST00000393368 PKD2Q13563 968 aa11.55□□□□□ -0.56
HMGB3P1-201ENST00000393368 TRIM52Q96A61 297 aa11.54□□□□□ -0.56
HMGB3P1-201ENST00000393368 STAG3Q9UJ98 1225 aa11.54□□□□□ -0.56
HMGB3P1-201ENST00000393368 POLR1AO95602 1720 aaPredicted RBP11.53□□□□□ -0.56
HMGB3P1-201ENST00000393368 ANKLE2Q86XL3 938 aa11.53□□□□□ -0.56
HMGB3P1-201ENST00000393368 ADGRB3O60242 1522 aa11.53□□□□□ -0.56
HMGB3P1-201ENST00000393368 ZNF335Q9H4Z2 1342 aaPredicted RBP11.53□□□□□ -0.56
HMGB3P1-201ENST00000393368 LTKP29376 864 aa11.52□□□□□ -0.57
HMGB3P1-201ENST00000393368 ILDR1Q86SU0 546 aaPredicted RBP11.52□□□□□ -0.57
HMGB3P1-201ENST00000393368 NPHP4O75161 1426 aaPredicted RBP11.52□□□□□ -0.57
HMGB3P1-201ENST00000393368 ARHGAP23Q9P227 1491 aa11.51□□□□□ -0.57
HMGB3P1-201ENST00000393368 CHGAP10645 457 aaKnown RBP11.51□□□□□ -0.57
HMGB3P1-201ENST00000393368 MAPK8IP2Q13387 824 aaPredicted RBP11.51□□□□□ -0.57
HMGB3P1-201ENST00000393368 TMEM2Q9UHN6 1383 aa11.51□□□□□ -0.57
HMGB3P1-201ENST00000393368 SCAF11Q99590 1463 aaKnown RBP11.51□□□□□ -0.57
HMGB3P1-201ENST00000393368 SLIT1O75093 1534 aa11.5□□□□□ -0.57
HMGB3P1-201ENST00000393368 LTBP4Q8N2S1 1624 aa11.5□□□□□ -0.57
HMGB3P1-201ENST00000393368 TXNDC2Q86VQ3 553 aa11.5□□□□□ -0.57
HMGB3P1-201ENST00000393368 CERKQ8TCT0 537 aa11.5□□□□□ -0.57
HMGB3P1-201ENST00000393368 SLC52A1Q9NWF4 448 aa11.5□□□□□ -0.57
HMGB3P1-201ENST00000393368 SCAF1Q9H7N4 1312 aaKnown RBP11.5□□□□□ -0.57
HMGB3P1-201ENST00000393368 MED14O60244 1454 aa11.49□□□□□ -0.57
HMGB3P1-201ENST00000393368 IQGAP1P46940 1657 aa11.49□□□□□ -0.57
HMGB3P1-201ENST00000393368 NUTM2DQ5VT03 806 aaPredicted RBP11.48□□□□□ -0.57
HMGB3P1-201ENST00000393368 SLC4A1APQ9BWU0 796 aaKnown RBP11.48□□□□□ -0.57
HMGB3P1-201ENST00000393368 SETD5Q9C0A6 1442 aa11.48□□□□□ -0.57
HMGB3P1-201ENST00000393368 TMEM131LA2VDJ0 1609 aa11.48□□□□□ -0.57
HMGB3P1-201ENST00000393368 SPHKAPQ2M3C7 1700 aa11.47□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 30.9 ms