RNA–Protein interactions for RNA: ENST00000380833.8

CLCN4-202, Transcript of chloride voltage-gated channel 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLCN4, Length 6,750 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLCN4-202ENST00000380833 MAPK8IP2Q13387 824 aaPredicted RBP13.37□□□□□ -0.27
CLCN4-202ENST00000380833 BAZ1BQ9UIG0 1483 aaKnown RBP13.37□□□□□ -0.27
CLCN4-202ENST00000380833 DEF6Q9H4E7 631 aa13.37□□□□□ -0.27
CLCN4-202ENST00000380833 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP13.37□□□□□ -0.27
CLCN4-202ENST00000380833 KIAA1211Q6ZU35 1233 aa13.37□□□□□ -0.27
CLCN4-202ENST00000380833 TRIM6-TRIM34B2RNG4 842 aa13.36□□□□□ -0.27
CLCN4-202ENST00000380833 ITPRIPQ8IWB1 547 aa13.36□□□□□ -0.27
CLCN4-202ENST00000380833 SUGP2Q8IX01 1082 aaKnown RBP eCLIP13.36□□□□□ -0.27
CLCN4-202ENST00000380833 MCCP23508 829 aa13.36□□□□□ -0.27
CLCN4-202ENST00000380833 RBM10P98175 930 aaKnown RBP13.36□□□□□ -0.27
CLCN4-202ENST00000380833 CALD1Q05682 793 aaKnown RBP13.35□□□□□ -0.27
CLCN4-202ENST00000380833 PES1O00541 588 aaKnown RBP13.35□□□□□ -0.27
CLCN4-202ENST00000380833 PPP1R1BQ9UD71 204 aaPredicted RBP13.34□□□□□ -0.27
CLCN4-202ENST00000380833 HSP90AB3PQ58FF7 597 aa13.34□□□□□ -0.27
CLCN4-202ENST00000380833 R3HCC1Q9Y3T6 440 aaKnown RBP13.34□□□□□ -0.27
CLCN4-202ENST00000380833 PHF14O94880 888 aa13.33□□□□□ -0.28
CLCN4-202ENST00000380833 U2AF1L5P0DN76 240 aaPredicted RBP13.33□□□□□ -0.28
CLCN4-202ENST00000380833 U2AF1Q01081 240 aaKnown RBP eCLIP13.33□□□□□ -0.28
CLCN4-202ENST00000380833 EVA1CP58658 441 aa13.33□□□□□ -0.28
CLCN4-202ENST00000380833 HDGFP51858 240 aaKnown RBP13.33□□□□□ -0.28
CLCN4-202ENST00000380833 RRP12Q5JTH9 1297 aaKnown RBP13.33□□□□□ -0.28
CLCN4-202ENST00000380833 SKOR2Q2VWA4 1001 aaPredicted RBP13.32□□□□□ -0.28
CLCN4-202ENST00000380833 NGDNQ8NEJ9 315 aaKnown RBP13.32□□□□□ -0.28
CLCN4-202ENST00000380833 BRPF3Q9ULD4 1205 aa13.32□□□□□ -0.28
CLCN4-202ENST00000380833 FOXD4L6Q3SYB3 417 aaPredicted RBP13.32□□□□□ -0.28
CLCN4-202ENST00000380833 FOXD4L3Q6VB84 417 aaPredicted RBP13.32□□□□□ -0.28
CLCN4-202ENST00000380833 HDGFL2Q7Z4V5 671 aaPredicted RBP13.31□□□□□ -0.28
CLCN4-202ENST00000380833 CWC22Q9HCG8 908 aaKnown RBP13.31□□□□□ -0.28
CLCN4-202ENST00000380833 CLIP1P30622 1438 aa13.31□□□□□ -0.28
CLCN4-202ENST00000380833 TMF1P82094 1093 aa13.31□□□□□ -0.28
CLCN4-202ENST00000380833 USP8P40818 1118 aa13.31□□□□□ -0.28
CLCN4-202ENST00000380833 CCDC146Q8IYE0 955 aa13.31□□□□□ -0.28
CLCN4-202ENST00000380833 CCDC191Q8NCU4 936 aa13.3□□□□□ -0.28
CLCN4-202ENST00000380833 H0YHG0 523 aa13.3□□□□□ -0.28
CLCN4-202ENST00000380833 TPM4P67936 248 aa13.3□□□□□ -0.28
CLCN4-202ENST00000380833 KANK1Q14678 1352 aa13.29□□□□□ -0.28
CLCN4-202ENST00000380833 PDS5BQ9NTI5 1447 aa13.29□□□□□ -0.28
CLCN4-202ENST00000380833 ARGLU1Q9NWB6 273 aaPredicted RBP13.29□□□□□ -0.28
CLCN4-202ENST00000380833 NECTIN2Q92692 538 aa13.29□□□□□ -0.28
CLCN4-202ENST00000380833 BCL11BQ9C0K0 894 aaPredicted RBP13.29□□□□□ -0.28
CLCN4-202ENST00000380833 CLUAP1Q96AJ1 413 aa13.28□□□□□ -0.28
CLCN4-202ENST00000380833 BRD2P25440 801 aaKnown RBP13.28□□□□□ -0.28
CLCN4-202ENST00000380833 DIAPH3Q9NSV4 1193 aa13.28□□□□□ -0.28
CLCN4-202ENST00000380833 AMPHP49418 695 aa13.27□□□□□ -0.28
CLCN4-202ENST00000380833 CFAP44Q96MT7 982 aa13.27□□□□□ -0.29
CLCN4-202ENST00000380833 CTDP1Q9Y5B0 961 aaPredicted RBP13.27□□□□□ -0.29
CLCN4-202ENST00000380833 RSF1Q96T23 1441 aaPredicted RBP13.26□□□□□ -0.29
CLCN4-202ENST00000380833 MFAP1P55081 439 aaKnown RBP13.26□□□□□ -0.29
CLCN4-202ENST00000380833 TCEAL9Q9UHQ7 104 aa13.26□□□□□ -0.29
CLCN4-202ENST00000380833 SSR1P43307 286 aaKnown RBP13.26□□□□□ -0.29
CLCN4-202ENST00000380833 GIMAP7Q8NHV1 300 aa13.26□□□□□ -0.29
CLCN4-202ENST00000380833 PDCL3Q9H2J4 239 aa13.25□□□□□ -0.29
CLCN4-202ENST00000380833 LEKR1Q6ZMV7 388 aa13.25□□□□□ -0.29
CLCN4-202ENST00000380833 ELL2O00472 640 aaPredicted RBP13.25□□□□□ -0.29
CLCN4-202ENST00000380833 GPATCH11Q8N954 259 aa13.25□□□□□ -0.29
CLCN4-202ENST00000380833 TRIM34Q9BYJ4 488 aa13.25□□□□□ -0.29
CLCN4-202ENST00000380833 ACBD3Q9H3P7 528 aa13.24□□□□□ -0.29
CLCN4-202ENST00000380833 CECR2Q9BXF3 1484 aa13.24□□□□□ -0.29
CLCN4-202ENST00000380833 KDM4AO75164 1064 aa13.24□□□□□ -0.29
CLCN4-202ENST00000380833 MTMR7Q9Y216 660 aa13.24□□□□□ -0.29
CLCN4-202ENST00000380833 CEP89Q96ST8 783 aa13.24□□□□□ -0.29
CLCN4-202ENST00000380833 STK31Q9BXU1 1019 aa13.23□□□□□ -0.29
CLCN4-202ENST00000380833 CCNB3Q8WWL7 1395 aa13.23□□□□□ -0.29
CLCN4-202ENST00000380833 DYDC1Q8WWB3 177 aa13.22□□□□□ -0.29
CLCN4-202ENST00000380833 CHMP4BQ9H444 224 aaKnown RBP13.22□□□□□ -0.29
CLCN4-202ENST00000380833 ZNF428Q96B54 188 aa13.22□□□□□ -0.29
CLCN4-202ENST00000380833 E9PSI1 815 aa13.22□□□□□ -0.29
CLCN4-202ENST00000380833 DNAJC2Q99543 621 aaKnown RBP13.22□□□□□ -0.29
CLCN4-202ENST00000380833 CHMP4AQ9BY43 222 aa13.22□□□□□ -0.29
CLCN4-202ENST00000380833 RRP7AQ9Y3A4 280 aaKnown RBP13.22□□□□□ -0.29
CLCN4-202ENST00000380833 DHX16O60231 1041 aaKnown RBP13.22□□□□□ -0.29
CLCN4-202ENST00000380833 SLC4A3P48751 1232 aa13.22□□□□□ -0.29
CLCN4-202ENST00000380833 CCER2I3L3R5 266 aa13.22□□□□□ -0.29
CLCN4-202ENST00000380833 MRE11P49959 708 aa13.22□□□□□ -0.29
CLCN4-202ENST00000380833 HMMRO75330 724 aa13.21□□□□□ -0.29
CLCN4-202ENST00000380833 AXDND1Q5T1B0 1012 aaPredicted RBP13.21□□□□□ -0.29
CLCN4-202ENST00000380833 ZNF592Q92610 1267 aa13.21□□□□□ -0.29
CLCN4-202ENST00000380833 HMGN5P82970 282 aaKnown RBP13.21□□□□□ -0.29
CLCN4-202ENST00000380833 PLCD4Q9BRC7 762 aa13.21□□□□□ -0.29
CLCN4-202ENST00000380833 FOSBP53539 338 aa13.21□□□□□ -0.3
CLCN4-202ENST00000380833 FYB1O15117 783 aa13.2□□□□□ -0.3
CLCN4-202ENST00000380833 MS4A1P11836 297 aa13.2□□□□□ -0.3
CLCN4-202ENST00000380833 AK7Q96M32 723 aa13.2□□□□□ -0.3
CLCN4-202ENST00000380833 SPAG9O60271 1321 aaKnown RBP13.2□□□□□ -0.3
CLCN4-202ENST00000380833 EID1Q9Y6B2 187 aa13.2□□□□□ -0.3
CLCN4-202ENST00000380833 CCDC70Q6NSX1 233 aa13.19□□□□□ -0.3
CLCN4-202ENST00000380833 EIF2S2P20042 333 aaKnown RBP13.19□□□□□ -0.3
CLCN4-202ENST00000380833 RSPH4AQ5TD94 716 aa13.19□□□□□ -0.3
CLCN4-202ENST00000380833 CALCOCO1Q9P1Z2 691 aa13.19□□□□□ -0.3
CLCN4-202ENST00000380833 CCDC39Q9UFE4 941 aa13.19□□□□□ -0.3
CLCN4-202ENST00000380833 HSP90B2PQ58FF3 399 aa13.19□□□□□ -0.3
CLCN4-202ENST00000380833 CGNQ9P2M7 1197 aaKnown RBP13.19□□□□□ -0.3
CLCN4-202ENST00000380833 TPM3P06753 285 aa13.19□□□□□ -0.3
CLCN4-202ENST00000380833 CCAR2Q8N163 923 aaKnown RBP13.19□□□□□ -0.3
CLCN4-202ENST00000380833 ZHX1Q9UKY1 873 aaPredicted RBP13.18□□□□□ -0.3
CLCN4-202ENST00000380833 FAM177BA6PVY3 158 aa13.18□□□□□ -0.3
CLCN4-202ENST00000380833 SMC4Q9NTJ3 1288 aa13.18□□□□□ -0.3
CLCN4-202ENST00000380833 OSCARQ8IYS5 282 aa13.18□□□□□ -0.3
CLCN4-202ENST00000380833 RILPL2Q969X0 211 aa13.18□□□□□ -0.3
CLCN4-202ENST00000380833 GPATCH3Q96I76 525 aa13.17□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 16.7 ms