RNA–Protein interactions for RNA: ENST00000380749.9

HMGN1-204, Transcript of high mobility group nucleosome binding domain 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HMGN1, Length 1,383 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGN1-204ENST00000380749 KIF3BO15066 747 aa27.22■■□□□ 1.95
HMGN1-204ENST00000380749 TSPY4P0CV99 314 aa27.22■■□□□ 1.95
HMGN1-204ENST00000380749 TSPY10P0CW01 314 aa27.22■■□□□ 1.95
HMGN1-204ENST00000380749 MIA2Q96PC5 1412 aa27.22■■□□□ 1.95
HMGN1-204ENST00000380749 EIF2AK4Q9P2K8 1649 aaKnown RBP27.22■■□□□ 1.95
HMGN1-204ENST00000380749 ZC3H13Q5T200 1668 aaKnown RBP27.21■■□□□ 1.95
HMGN1-204ENST00000380749 CROCC2H7BZ55 1655 aa27.2■■□□□ 1.94
HMGN1-204ENST00000380749 POLR1AO95602 1720 aaPredicted RBP27.2■■□□□ 1.94
HMGN1-204ENST00000380749 PZPP20742 1482 aa27.19■■□□□ 1.94
HMGN1-204ENST00000380749 LTBP4Q8N2S1 1624 aa27.18■■□□□ 1.94
HMGN1-204ENST00000380749 A2ML1A8K2U0 1454 aa27.18■■□□□ 1.94
HMGN1-204ENST00000380749 KANK4Q5T7N3 995 aaPredicted RBP27.18■■□□□ 1.94
HMGN1-204ENST00000380749 DNMT1P26358 1616 aaKnown RBP27.17■■□□□ 1.94
HMGN1-204ENST00000380749 TCOF1Q13428 1488 aaKnown RBP27.16■■□□□ 1.94
HMGN1-204ENST00000380749 TNRQ92752 1358 aa27.13■■□□□ 1.93
HMGN1-204ENST00000380749 WASHC2CQ9Y4E1 1318 aa27.13■■□□□ 1.93
HMGN1-204ENST00000380749 IQSEC2Q5JU85 1478 aa27.12■■□□□ 1.93
HMGN1-204ENST00000380749 PTPN23Q9H3S7 1636 aa27.12■■□□□ 1.93
HMGN1-204ENST00000380749 APLP2Q06481 763 aa27.12■■□□□ 1.93
HMGN1-204ENST00000380749 PKD2Q13563 968 aa27.11■■□□□ 1.93
HMGN1-204ENST00000380749 CEP152O94986 1710 aa27.11■■□□□ 1.93
HMGN1-204ENST00000380749 NCKAP5LQ9HCH0 1330 aa27.1■■□□□ 1.93
HMGN1-204ENST00000380749 ABCC3O15438 1527 aa27.09■■□□□ 1.93
HMGN1-204ENST00000380749 CFAP65Q6ZU64 1925 aaKnown RBP27.08■■□□□ 1.93
HMGN1-204ENST00000380749 SHANK2Q9UPX8 1470 aa27.08■■□□□ 1.93
HMGN1-204ENST00000380749 DUOX2Q9NRD8 1548 aa27.08■■□□□ 1.93
HMGN1-204ENST00000380749 MROH1Q8NDA8 1641 aa27.07■■□□□ 1.92
HMGN1-204ENST00000380749 NLRP1Q9C000 1473 aa27.05■■□□□ 1.92
HMGN1-204ENST00000380749 FBXO31Q5XUX0 539 aaPredicted RBP27.04■■□□□ 1.92
HMGN1-204ENST00000380749 NEURL4Q96JN8 1562 aa27.02■■□□□ 1.92
HMGN1-204ENST00000380749 SPATA31D1Q6ZQQ2 1576 aa27.01■■□□□ 1.91
HMGN1-204ENST00000380749 UGGT1Q9NYU2 1555 aa27.01■■□□□ 1.91
HMGN1-204ENST00000380749 FGD6Q6ZV73 1430 aa27■■□□□ 1.91
HMGN1-204ENST00000380749 PRDM15P57071 1507 aaPredicted RBP26.99■■□□□ 1.91
HMGN1-204ENST00000380749 ZNF335Q9H4Z2 1342 aaPredicted RBP26.99■■□□□ 1.91
HMGN1-204ENST00000380749 KIF15Q9NS87 1388 aa26.98■■□□□ 1.91
HMGN1-204ENST00000380749 ERBINQ96RT1 1412 aa26.98■■□□□ 1.91
HMGN1-204ENST00000380749 ABCC5O15440 1437 aa26.97■■□□□ 1.91
HMGN1-204ENST00000380749 DEPDC5O75140 1603 aa26.97■■□□□ 1.91
HMGN1-204ENST00000380749 DAPK1P53355 1430 aa26.96■■□□□ 1.91
HMGN1-204ENST00000380749 ERVK-7P63135 1459 aa26.96■■□□□ 1.91
HMGN1-204ENST00000380749 IQGAP1P46940 1657 aa26.92■■□□□ 1.9
HMGN1-204ENST00000380749 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP26.91■■□□□ 1.9
HMGN1-204ENST00000380749 THEMISQ8N1K5 641 aaPredicted RBP26.91■■□□□ 1.9
HMGN1-204ENST00000380749 UBR1Q8IWV7 1749 aa26.91■■□□□ 1.9
HMGN1-204ENST00000380749 ANKLE2Q86XL3 938 aa26.88■■□□□ 1.89
HMGN1-204ENST00000380749 CPS1P31327 1500 aa26.88■■□□□ 1.89
HMGN1-204ENST00000380749 MED14O60244 1454 aa26.87■■□□□ 1.89
HMGN1-204ENST00000380749 RRP7BPQ9NSQ0 103 aa26.86■■□□□ 1.89
HMGN1-204ENST00000380749 ANKRD30AQ9BXX3 1397 aa26.85■■□□□ 1.89
HMGN1-204ENST00000380749 ARHGAP31Q2M1Z3 1444 aa26.85■■□□□ 1.89
HMGN1-204ENST00000380749 NPHP4O75161 1426 aaPredicted RBP26.84■■□□□ 1.89
HMGN1-204ENST00000380749 VWDEQ8N2E2 1590 aa26.83■■□□□ 1.89
HMGN1-204ENST00000380749 KANK1Q14678 1352 aa26.83■■□□□ 1.89
HMGN1-204ENST00000380749 UBAP1LF5GYI3 381 aa26.8■■□□□ 1.88
HMGN1-204ENST00000380749 ADGRL2O95490 1459 aa26.8■■□□□ 1.88
HMGN1-204ENST00000380749 LMTK2Q8IWU2 1503 aa26.78■■□□□ 1.88
HMGN1-204ENST00000380749 PIK3C2BO00750 1634 aa26.77■■□□□ 1.88
HMGN1-204ENST00000380749 GRWD1Q9BQ67 446 aaKnown RBP eCLIP26.77■■□□□ 1.881e-6■■□□□ 12.8
HMGN1-204ENST00000380749 CHIC2Q9UKJ5 165 aa26.77■■□□□ 1.88
HMGN1-204ENST00000380749 KDM5AP29375 1690 aaKnown RBP26.77■■□□□ 1.88
HMGN1-204ENST00000380749 SYNMO15061 1565 aa26.75■■□□□ 1.87
HMGN1-204ENST00000380749 STRCP1A6NGW2 1772 aa26.74■■□□□ 1.87
HMGN1-204ENST00000380749 SCAF11Q99590 1463 aaKnown RBP26.74■■□□□ 1.87
HMGN1-204ENST00000380749 EFCAB6Q5THR3 1501 aa26.74■■□□□ 1.87
HMGN1-204ENST00000380749 DISP3Q9P2K9 1392 aa26.73■■□□□ 1.87
HMGN1-204ENST00000380749 SLIT1O75093 1534 aa26.73■■□□□ 1.87
HMGN1-204ENST00000380749 FAM50AQ14320 339 aaKnown RBP26.71■■□□□ 1.87
HMGN1-204ENST00000380749 ARHGAP23Q9P227 1491 aa26.71■■□□□ 1.87
HMGN1-204ENST00000380749 ANKRD50Q9ULJ7 1429 aa26.66■■□□□ 1.86
HMGN1-204ENST00000380749 TET3O43151 1660 aa26.65■■□□□ 1.86
HMGN1-204ENST00000380749 GCC2Q8IWJ2 1684 aa26.65■■□□□ 1.86
HMGN1-204ENST00000380749 TOM1O60784 492 aa26.63■■□□□ 1.85
HMGN1-204ENST00000380749 UNC13BO14795 1591 aa26.63■■□□□ 1.85
HMGN1-204ENST00000380749 ADGRB3O60242 1522 aa26.62■■□□□ 1.85
HMGN1-204ENST00000380749 SCAF1Q9H7N4 1312 aaKnown RBP26.62■■□□□ 1.85
HMGN1-204ENST00000380749 STAG3Q9UJ98 1225 aa26.61■■□□□ 1.85
HMGN1-204ENST00000380749 RPRD2Q5VT52 1461 aaKnown RBP26.61■■□□□ 1.85
HMGN1-204ENST00000380749 NOS1P29475 1434 aa26.61■■□□□ 1.85
HMGN1-204ENST00000380749 EID1Q9Y6B2 187 aa26.6■■□□□ 1.85
HMGN1-204ENST00000380749 MYO5BQ9ULV0 1848 aa26.6■■□□□ 1.85
HMGN1-204ENST00000380749 LRRC7Q96NW7 1537 aa26.6■■□□□ 1.85
HMGN1-204ENST00000380749 TXNDC2Q86VQ3 553 aa26.59■■□□□ 1.85
HMGN1-204ENST00000380749 TMEM2Q9UHN6 1383 aa26.59■■□□□ 1.85
HMGN1-204ENST00000380749 PIP4K2BP78356 416 aa26.58■■□□□ 1.84
HMGN1-204ENST00000380749 XIRP1Q702N8 1843 aaKnown RBP26.57■■□□□ 1.84
HMGN1-204ENST00000380749 LTKP29376 864 aa26.57■■□□□ 1.84
HMGN1-204ENST00000380749 ALKQ9UM73 1620 aa26.56■■□□□ 1.84
HMGN1-204ENST00000380749 IDI1Q13907 227 aa26.53■■□□□ 1.84
HMGN1-204ENST00000380749 ROCK1Q13464 1354 aa26.53■■□□□ 1.84
HMGN1-204ENST00000380749 IQGAP3Q86VI3 1631 aa26.52■■□□□ 1.84
HMGN1-204ENST00000380749 E9PCH4 1651 aa26.51■■□□□ 1.83
HMGN1-204ENST00000380749 SLC52A1Q9NWF4 448 aa26.5■■□□□ 1.83
HMGN1-204ENST00000380749 HSPA1LP34931 641 aa26.48■■□□□ 1.83
HMGN1-204ENST00000380749 ILDR2Q71H61 639 aa26.47■■□□□ 1.83
HMGN1-204ENST00000380749 TMEM131LA2VDJ0 1609 aa26.45■■□□□ 1.83
HMGN1-204ENST00000380749 MED1Q15648 1581 aaPredicted RBP26.45■■□□□ 1.83
HMGN1-204ENST00000380749 NWD1Q149M9 1564 aa26.42■■□□□ 1.82
HMGN1-204ENST00000380749 NKTRP30414 1462 aaKnown RBP26.39■■□□□ 1.81
HMGN1-204ENST00000380749 CHD2O14647 1828 aaKnown RBP26.39■■□□□ 1.81
Retrieved 100 of 20,778 RNA–protein pairs in 18.5 ms