RNA–Protein interactions for RNA: ENST00000378839.1

CCDC3-202, Transcript of coiled-coil domain containing 3, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene CCDC3, Length 3,180 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC3-202ENST00000378839 POLR3GLQ9BT43 218 aa18.49■□□□□ 0.55
CCDC3-202ENST00000378839 CARD11Q9BXL7 1154 aa18.49■□□□□ 0.55
CCDC3-202ENST00000378839 FAM9BQ8IZU0 186 aa18.49■□□□□ 0.55
CCDC3-202ENST00000378839 TRAPPC8Q9Y2L5 1435 aa18.49■□□□□ 0.55
CCDC3-202ENST00000378839 MRS2Q9HD23 443 aa18.48■□□□□ 0.55
CCDC3-202ENST00000378839 CNGB1Q14028 1251 aaPredicted RBP18.48■□□□□ 0.55
CCDC3-202ENST00000378839 TSHZ2Q9NRE2 1034 aa18.48■□□□□ 0.55
CCDC3-202ENST00000378839 ST20-MTHFSA0A0A6YYL1 179 aa18.47■□□□□ 0.55
CCDC3-202ENST00000378839 IQGAP3Q86VI3 1631 aa18.46■□□□□ 0.55
CCDC3-202ENST00000378839 ABCC1P33527 1531 aa18.45■□□□□ 0.54
CCDC3-202ENST00000378839 RGL3Q3MIN7 710 aa18.45■□□□□ 0.54
CCDC3-202ENST00000378839 CCDC144AA2RUR9 1427 aa18.44■□□□□ 0.54
CCDC3-202ENST00000378839 PRAG1Q86YV5 1406 aa18.44■□□□□ 0.54
CCDC3-202ENST00000378839 NBPF1Q3BBV0 1214 aa18.44■□□□□ 0.54
CCDC3-202ENST00000378839 A2MP01023 1474 aa18.43■□□□□ 0.54
CCDC3-202ENST00000378839 MAGI2Q86UL8 1455 aa18.43■□□□□ 0.54
CCDC3-202ENST00000378839 DUOX2Q9NRD8 1548 aa18.43■□□□□ 0.54
CCDC3-202ENST00000378839 TRPM1Q7Z4N2 1603 aa18.42■□□□□ 0.54
CCDC3-202ENST00000378839 EFCAB2Q5VUJ9 269 aa18.42■□□□□ 0.54
CCDC3-202ENST00000378839 IRX6P78412 446 aaPredicted RBP18.41■□□□□ 0.54
CCDC3-202ENST00000378839 AFAP1Q8N556 730 aa18.41■□□□□ 0.54
CCDC3-202ENST00000378839 ROCK2O75116 1388 aaKnown RBP18.41■□□□□ 0.54
CCDC3-202ENST00000378839 ARID4BQ4LE39 1312 aaPredicted RBP18.4■□□□□ 0.54
CCDC3-202ENST00000378839 ERBINQ96RT1 1412 aa18.4■□□□□ 0.54
CCDC3-202ENST00000378839 NEFLP07196 543 aa18.39■□□□□ 0.53
CCDC3-202ENST00000378839 ATP10AO60312 1499 aa18.35■□□□□ 0.53
CCDC3-202ENST00000378839 ZBED9Q6R2W3 1325 aa18.35■□□□□ 0.53
CCDC3-202ENST00000378839 E9PCH4 1651 aa18.34■□□□□ 0.53
CCDC3-202ENST00000378839 ZFYVE16Q7Z3T8 1539 aa18.34■□□□□ 0.53
CCDC3-202ENST00000378839 SENP3-EIF4A1A0A087X0R7 540 aa18.34■□□□□ 0.53
CCDC3-202ENST00000378839 WDR7Q9Y4E6 1490 aa18.33■□□□□ 0.52
CCDC3-202ENST00000378839 GPRASP1Q5JY77 1395 aa18.33■□□□□ 0.52
CCDC3-202ENST00000378839 SPAG9O60271 1321 aaKnown RBP18.32■□□□□ 0.52
CCDC3-202ENST00000378839 RIMBP3CA6NJZ7 1639 aa18.32■□□□□ 0.52
CCDC3-202ENST00000378839 RIMBP3BA6NNM3 1639 aa18.32■□□□□ 0.52
CCDC3-202ENST00000378839 RIMBP3Q9UFD9 1639 aa18.32■□□□□ 0.52
CCDC3-202ENST00000378839 ARAP3Q8WWN8 1544 aa18.3■□□□□ 0.52
CCDC3-202ENST00000378839 TESK2Q96S53 571 aa18.3■□□□□ 0.52
CCDC3-202ENST00000378839 BCL11AQ9H165 835 aa18.3■□□□□ 0.52
CCDC3-202ENST00000378839 PRDM15P57071 1507 aaPredicted RBP18.3■□□□□ 0.52
CCDC3-202ENST00000378839 ABCA9Q8IUA7 1624 aa18.29■□□□□ 0.52
CCDC3-202ENST00000378839 PNISRQ8TF01 805 aaKnown RBP18.29■□□□□ 0.52
CCDC3-202ENST00000378839 DISP3Q9P2K9 1392 aa18.29■□□□□ 0.52
CCDC3-202ENST00000378839 RTEL1-TNFRSF6BF6WH68 1400 aa18.29■□□□□ 0.52
CCDC3-202ENST00000378839 FANCAO15360 1455 aa18.28■□□□□ 0.52
CCDC3-202ENST00000378839 LAMC1P11047 1609 aa18.26■□□□□ 0.51
CCDC3-202ENST00000378839 INO80Q9ULG1 1556 aaPredicted RBP18.25■□□□□ 0.51
CCDC3-202ENST00000378839 DEPDC5O75140 1603 aa18.25■□□□□ 0.51
CCDC3-202ENST00000378839 PER1O15534 1290 aaPredicted RBP18.25■□□□□ 0.51
CCDC3-202ENST00000378839 ASXL2Q76L83 1435 aa18.24■□□□□ 0.51
CCDC3-202ENST00000378839 COL17A1Q9UMD9 1497 aaPredicted RBP18.24■□□□□ 0.51
CCDC3-202ENST00000378839 ATP7AQ04656 1500 aa18.24■□□□□ 0.51
CCDC3-202ENST00000378839 CLTCL1P53675 1640 aa18.22■□□□□ 0.51
CCDC3-202ENST00000378839 RNF17Q9BXT8 1623 aaKnown RBP18.22■□□□□ 0.51
CCDC3-202ENST00000378839 PTPRTO14522 1441 aa18.22■□□□□ 0.51
CCDC3-202ENST00000378839 SCAPERQ9BY12 1400 aa18.22■□□□□ 0.51
CCDC3-202ENST00000378839 TRPM2O94759 1503 aa18.22■□□□□ 0.51
CCDC3-202ENST00000378839 MADDQ8WXG6 1647 aa18.21■□□□□ 0.51
CCDC3-202ENST00000378839 VWDEQ8N2E2 1590 aa18.21■□□□□ 0.51
CCDC3-202ENST00000378839 ADGRL1O94910 1474 aa18.21■□□□□ 0.51
CCDC3-202ENST00000378839 EIF2AK4Q9P2K8 1649 aaKnown RBP18.21■□□□□ 0.5
CCDC3-202ENST00000378839 LRPPRCP42704 1394 aaKnown RBP18.21■□□□□ 0.5
CCDC3-202ENST00000378839 TMC1Q8TDI8 760 aa18.2■□□□□ 0.5
CCDC3-202ENST00000378839 MROH1Q8NDA8 1641 aa18.2■□□□□ 0.5
CCDC3-202ENST00000378839 MYBBP1AQ9BQG0 1328 aaKnown RBP18.2■□□□□ 0.5
CCDC3-202ENST00000378839 SPHKAPQ2M3C7 1700 aa18.19■□□□□ 0.5
CCDC3-202ENST00000378839 PARD3Q8TEW0 1356 aa18.19■□□□□ 0.5
CCDC3-202ENST00000378839 SMG6Q86US8 1419 aaKnown RBP18.18■□□□□ 0.5
CCDC3-202ENST00000378839 KIF3BO15066 747 aa18.18■□□□□ 0.5
CCDC3-202ENST00000378839 CEP152O94986 1710 aa18.17■□□□□ 0.5
CCDC3-202ENST00000378839 RALBP1Q15311 655 aa18.17■□□□□ 0.5
CCDC3-202ENST00000378839 TET3O43151 1660 aa18.17■□□□□ 0.5
CCDC3-202ENST00000378839 UGGT1Q9NYU2 1555 aa18.17■□□□□ 0.5
CCDC3-202ENST00000378839 BRD4O60885 1362 aaPredicted RBP18.17■□□□□ 0.5
CCDC3-202ENST00000378839 PANK3Q9H999 370 aa18.15■□□□□ 0.5
CCDC3-202ENST00000378839 KIDINS220Q9ULH0 1771 aa18.15■□□□□ 0.5
CCDC3-202ENST00000378839 IQGAP1P46940 1657 aa18.14■□□□□ 0.49
CCDC3-202ENST00000378839 RBM19Q9Y4C8 960 aaKnown RBP18.14■□□□□ 0.49
CCDC3-202ENST00000378839 KTN1Q86UP2 1357 aaKnown RBP18.13■□□□□ 0.49
CCDC3-202ENST00000378839 CC2D1BQ5T0F9 858 aaKnown RBP18.13■□□□□ 0.49
CCDC3-202ENST00000378839 NUDCQ9Y266 331 aa18.13■□□□□ 0.49
CCDC3-202ENST00000378839 MYT1LQ9UL68 1186 aa18.12■□□□□ 0.49
CCDC3-202ENST00000378839 CYB5RLQ6IPT4 315 aa18.12■□□□□ 0.49
CCDC3-202ENST00000378839 PPP4R2Q9NY27 417 aa18.11■□□□□ 0.49
CCDC3-202ENST00000378839 B4GALNT3Q6L9W6 998 aa18.11■□□□□ 0.49
CCDC3-202ENST00000378839 ANP32EQ9BTT0 268 aa18.11■□□□□ 0.49
CCDC3-202ENST00000378839 DNAJC5Q9H3Z4 198 aa18.1■□□□□ 0.49
CCDC3-202ENST00000378839 TMF1P82094 1093 aa18.1■□□□□ 0.49
CCDC3-202ENST00000378839 RNF123Q5XPI4 1314 aa18.1■□□□□ 0.49
CCDC3-202ENST00000378839 ERICH6BQ5W0A0 696 aa18.09■□□□□ 0.49
CCDC3-202ENST00000378839 NLRP13Q86W25 1043 aa18.09■□□□□ 0.49
CCDC3-202ENST00000378839 PPRC1Q5VV67 1664 aaKnown RBP18.08■□□□□ 0.48
CCDC3-202ENST00000378839 KANK1Q14678 1352 aa18.07■□□□□ 0.48
CCDC3-202ENST00000378839 ADGRF5Q8IZF2 1346 aa18.06■□□□□ 0.48
CCDC3-202ENST00000378839 EFCAB6Q5THR3 1501 aa18.06■□□□□ 0.48
CCDC3-202ENST00000378839 FRMPD1Q5SYB0 1578 aa18.06■□□□□ 0.48
CCDC3-202ENST00000378839 SCAF11Q99590 1463 aaKnown RBP18.05■□□□□ 0.48
CCDC3-202ENST00000378839 SALL2Q9Y467 1007 aaPredicted RBP18.05■□□□□ 0.48
CCDC3-202ENST00000378839 MROH2AA6NES4 1674 aa18.05■□□□□ 0.48
CCDC3-202ENST00000378839 ZNF518AQ6AHZ1 1483 aa18.04■□□□□ 0.48
Retrieved 100 of 20,778 RNA–protein pairs in 34.2 ms