RNA–Protein interactions for RNA: ENST00000377819.9

RTN3-206, Transcript of reticulon 3, humanhuman

TSL 1 (best) BASIC

Gene RTN3, Length 4,937 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-206ENST00000377819 WDR97A6NE52 1622 aa13.13□□□□□ -0.31
RTN3-206ENST00000377819 TEX35Q5T0J7 233 aa13.13□□□□□ -0.31
RTN3-206ENST00000377819 RUFY1Q96T51 708 aa13.13□□□□□ -0.31
RTN3-206ENST00000377819 NOL10Q9BSC4 688 aaKnown RBP13.13□□□□□ -0.31
RTN3-206ENST00000377819 SLKQ9H2G2 1235 aaPredicted RBP13.13□□□□□ -0.31
RTN3-206ENST00000377819 PAK3O75914 559 aaPredicted RBP13.13□□□□□ -0.31
RTN3-206ENST00000377819 TRHP20396 242 aaPredicted RBP13.13□□□□□ -0.31
RTN3-206ENST00000377819 CCDC173Q0VFZ6 552 aa13.12□□□□□ -0.31
RTN3-206ENST00000377819 SPAG9O60271 1321 aaKnown RBP13.12□□□□□ -0.31
RTN3-206ENST00000377819 CC2D2AQ9P2K1 1620 aa13.12□□□□□ -0.31
RTN3-206ENST00000377819 ATP6V1DQ9Y5K8 247 aa13.12□□□□□ -0.31
RTN3-206ENST00000377819 ZRSR2Q15696 482 aaKnown RBP13.12□□□□□ -0.31
RTN3-206ENST00000377819 DEKP35659 375 aaKnown RBP13.11□□□□□ -0.31
RTN3-206ENST00000377819 TMF1P82094 1093 aa13.11□□□□□ -0.31
RTN3-206ENST00000377819 ZBTB4Q9P1Z0 1013 aaPredicted RBP13.11□□□□□ -0.31
RTN3-206ENST00000377819 H3BQV1 296 aa13.11□□□□□ -0.31
RTN3-206ENST00000377819 IFFO2Q5TF58 517 aa13.11□□□□□ -0.31
RTN3-206ENST00000377819 FAM184AQ8NB25 1140 aa13.11□□□□□ -0.31
RTN3-206ENST00000377819 CC2D1BQ5T0F9 858 aaKnown RBP13.11□□□□□ -0.31
RTN3-206ENST00000377819 B4GALNT3Q6L9W6 998 aa13.1□□□□□ -0.31
RTN3-206ENST00000377819 HDGFL2Q7Z4V5 671 aaPredicted RBP13.1□□□□□ -0.31
RTN3-206ENST00000377819 RAD21O60216 631 aa13.1□□□□□ -0.31
RTN3-206ENST00000377819 ZFYVE27Q5T4F4 411 aa13.1□□□□□ -0.31
RTN3-206ENST00000377819 TOP2BQ02880 1626 aa13.1□□□□□ -0.31
RTN3-206ENST00000377819 LRRFIP1Q32MZ4 808 aaKnown RBP13.1□□□□□ -0.31
RTN3-206ENST00000377819 MAP7D2Q96T17 732 aa13.1□□□□□ -0.31
RTN3-206ENST00000377819 ACBD3Q9H3P7 528 aa13.09□□□□□ -0.31
RTN3-206ENST00000377819 AK7Q96M32 723 aa13.09□□□□□ -0.31
RTN3-206ENST00000377819 ST18O60284 1047 aa13.08□□□□□ -0.31
RTN3-206ENST00000377819 OFD1O75665 1012 aa13.08□□□□□ -0.31
RTN3-206ENST00000377819 HSP90AA2PQ14568 343 aaPredicted RBP13.08□□□□□ -0.32
RTN3-206ENST00000377819 CFDP1Q9UEE9 299 aaPredicted RBP13.08□□□□□ -0.32
RTN3-206ENST00000377819 DHX16O60231 1041 aaKnown RBP13.08□□□□□ -0.32
RTN3-206ENST00000377819 NEXNQ0ZGT2 675 aa13.08□□□□□ -0.32
RTN3-206ENST00000377819 ZNF771Q7L3S4 317 aaPredicted RBP13.08□□□□□ -0.32
RTN3-206ENST00000377819 NOM1Q5C9Z4 860 aaKnown RBP13.07□□□□□ -0.32
RTN3-206ENST00000377819 HSP90B2PQ58FF3 399 aa13.07□□□□□ -0.32
RTN3-206ENST00000377819 ITPRIPQ8IWB1 547 aa13.06□□□□□ -0.32
RTN3-206ENST00000377819 SYNJ1O43426 1573 aa13.06□□□□□ -0.32
RTN3-206ENST00000377819 MSH5O43196 834 aa13.06□□□□□ -0.32
RTN3-206ENST00000377819 TRIM29Q14134 588 aa13.06□□□□□ -0.32
RTN3-206ENST00000377819 CFTRP13569 1480 aa13.05□□□□□ -0.32
RTN3-206ENST00000377819 HOOK1Q9UJC3 728 aaKnown RBP13.05□□□□□ -0.32
RTN3-206ENST00000377819 HOMER1Q86YM7 354 aa13.05□□□□□ -0.32
RTN3-206ENST00000377819 WWC2Q6AWC2 1192 aa13.05□□□□□ -0.32
RTN3-206ENST00000377819 H0YHG0 523 aa13.04□□□□□ -0.32
RTN3-206ENST00000377819 MLECQ14165 292 aa13.04□□□□□ -0.32
RTN3-206ENST00000377819 U2AF1L5P0DN76 240 aaPredicted RBP13.04□□□□□ -0.32
RTN3-206ENST00000377819 U2AF1Q01081 240 aaKnown RBP eCLIP13.04□□□□□ -0.321e-7■■■□□ 14.6
RTN3-206ENST00000377819 NOL8Q76FK4 1167 aaKnown RBP13.04□□□□□ -0.32
RTN3-206ENST00000377819 APPP05067 770 aa13.04□□□□□ -0.32
RTN3-206ENST00000377819 NAP1L1P55209 391 aaKnown RBP13.04□□□□□ -0.32
RTN3-206ENST00000377819 STK11IPQ8N1F8 1099 aa13.03□□□□□ -0.32
RTN3-206ENST00000377819 HSP90AB2PQ58FF8 381 aa13.03□□□□□ -0.32
RTN3-206ENST00000377819 MYO6Q9UM54 1294 aa13.03□□□□□ -0.32
RTN3-206ENST00000377819 VSIG10Q8N0Z9 540 aa13.02□□□□□ -0.32
RTN3-206ENST00000377819 MFAP1P55081 439 aaKnown RBP13.02□□□□□ -0.33
RTN3-206ENST00000377819 PMFBP1Q8TBY8 1022 aa13.02□□□□□ -0.33
RTN3-206ENST00000377819 NEFHP12036 1026 aa13.01□□□□□ -0.33
RTN3-206ENST00000377819 SAFB2Q14151 953 aaKnown RBP eCLIP13.01□□□□□ -0.331e-7■■■■□ 23.5
RTN3-206ENST00000377819 SLC4A10Q6U841 1118 aa13.01□□□□□ -0.33
RTN3-206ENST00000377819 ZNF592Q92610 1267 aa13.01□□□□□ -0.33
RTN3-206ENST00000377819 CPLX1O14810 134 aa13.01□□□□□ -0.33
RTN3-206ENST00000377819 ARGLU1Q9NWB6 273 aaPredicted RBP13.01□□□□□ -0.33
RTN3-206ENST00000377819 MCTP1Q6DN14 999 aa13.01□□□□□ -0.33
RTN3-206ENST00000377819 CCDC97Q96F63 343 aaPredicted RBP13□□□□□ -0.33
RTN3-206ENST00000377819 EZRP15311 586 aaKnown RBP13□□□□□ -0.33
RTN3-206ENST00000377819 SMC4Q9NTJ3 1288 aa13□□□□□ -0.33
RTN3-206ENST00000377819 BAZ1BQ9UIG0 1483 aaKnown RBP12.99□□□□□ -0.33
RTN3-206ENST00000377819 ANKRD18AQ8IVF6 992 aa12.99□□□□□ -0.33
RTN3-206ENST00000377819 TRDNQ13061 729 aa12.98□□□□□ -0.33
RTN3-206ENST00000377819 PLCD4Q9BRC7 762 aa12.98□□□□□ -0.33
RTN3-206ENST00000377819 MNS1Q8NEH6 495 aa12.97□□□□□ -0.33
RTN3-206ENST00000377819 DDX49Q9Y6V7 483 aaKnown RBP12.97□□□□□ -0.33
RTN3-206ENST00000377819 CCAR1Q8IX12 1150 aaKnown RBP12.97□□□□□ -0.33
RTN3-206ENST00000377819 LMOD3Q0VAK6 560 aa12.96□□□□□ -0.33
RTN3-206ENST00000377819 KANK1Q14678 1352 aa12.96□□□□□ -0.34
RTN3-206ENST00000377819 ERCC4Q92889 916 aaPredicted RBP12.95□□□□□ -0.34
RTN3-206ENST00000377819 DDX11L8A8MPP1 907 aa12.95□□□□□ -0.34
RTN3-206ENST00000377819 EPS15P42566 896 aa12.95□□□□□ -0.34
RTN3-206ENST00000377819 VPS37DQ86XT2 251 aa12.95□□□□□ -0.34
RTN3-206ENST00000377819 ZKSCAN1P17029 563 aaPredicted RBP12.95□□□□□ -0.34
RTN3-206ENST00000377819 STK26Q9P289 416 aa12.95□□□□□ -0.34
RTN3-206ENST00000377819 SAFBQ15424 915 aaKnown RBP eCLIP12.94□□□□□ -0.34
RTN3-206ENST00000377819 TMEM132AQ24JP5 1023 aa12.94□□□□□ -0.34
RTN3-206ENST00000377819 SAMD1Q6SPF0 538 aaPredicted RBP12.94□□□□□ -0.34
RTN3-206ENST00000377819 TSPYL1Q9H0U9 437 aa12.94□□□□□ -0.34
RTN3-206ENST00000377819 FOXD4L5Q5VV16 416 aaPredicted RBP12.94□□□□□ -0.34
RTN3-206ENST00000377819 FOXD4L4Q8WXT5 416 aaPredicted RBP12.94□□□□□ -0.34
RTN3-206ENST00000377819 RUFY2Q8WXA3 655 aa12.93□□□□□ -0.34
RTN3-206ENST00000377819 GOLGA6L7A0A1B0GV03 622 aa12.93□□□□□ -0.34
RTN3-206ENST00000377819 SKOR2Q2VWA4 1001 aaPredicted RBP12.93□□□□□ -0.34
RTN3-206ENST00000377819 FOXD4L1Q9NU39 408 aa12.93□□□□□ -0.34
RTN3-206ENST00000377819 KIF21BO75037 1637 aa12.93□□□□□ -0.34
RTN3-206ENST00000377819 ANKRD62A6NC57 917 aa12.93□□□□□ -0.34
RTN3-206ENST00000377819 ERICH2A1L162 156 aa12.92□□□□□ -0.34
RTN3-206ENST00000377819 AMPHP49418 695 aa12.92□□□□□ -0.34
RTN3-206ENST00000377819 NGDNQ8NEJ9 315 aaKnown RBP12.92□□□□□ -0.34
RTN3-206ENST00000377819 DCAF11Q8TEB1 546 aa12.92□□□□□ -0.34
RTN3-206ENST00000377819 CAGE1Q8TC20 777 aa12.92□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 47.8 ms