RNA–Protein interactions for RNA: ENST00000376636.7

VPS13A-205, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene VPS13A, Length 11,145 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-205ENST00000376636 DCAF8Q5TAQ9 597 aa14.3□□□□□ -0.12
VPS13A-205ENST00000376636 CCDC47Q96A33 483 aaKnown RBP14.3□□□□□ -0.12
VPS13A-205ENST00000376636 CFDP1Q9UEE9 299 aaPredicted RBP14.3□□□□□ -0.12
VPS13A-205ENST00000376636 CCDC173Q0VFZ6 552 aa14.29□□□□□ -0.12
VPS13A-205ENST00000376636 EIF3AQ14152 1382 aaKnown RBP14.29□□□□□ -0.12
VPS13A-205ENST00000376636 LRRFIP1Q32MZ4 808 aaKnown RBP14.29□□□□□ -0.12
VPS13A-205ENST00000376636 SRPK2P78362 688 aaKnown RBP14.29□□□□□ -0.12
VPS13A-205ENST00000376636 FAM184AQ8NB25 1140 aa14.29□□□□□ -0.12
VPS13A-205ENST00000376636 GSE1Q14687 1217 aa14.29□□□□□ -0.12
VPS13A-205ENST00000376636 PCMTD1Q96MG8 357 aaPredicted RBP14.28□□□□□ -0.12
VPS13A-205ENST00000376636 ODF2Q5BJF6 829 aa14.28□□□□□ -0.12
VPS13A-205ENST00000376636 NEXNQ0ZGT2 675 aa14.28□□□□□ -0.12
VPS13A-205ENST00000376636 DDX49Q9Y6V7 483 aaKnown RBP14.28□□□□□ -0.12
VPS13A-205ENST00000376636 ERCC4Q92889 916 aaPredicted RBP14.27□□□□□ -0.13
VPS13A-205ENST00000376636 PHLDB1Q86UU1 1377 aa14.26□□□□□ -0.13
VPS13A-205ENST00000376636 CNKSR2Q8WXI2 1034 aa14.26□□□□□ -0.13
VPS13A-205ENST00000376636 CT47A1Q5JQC4 288 aaPredicted RBP14.25□□□□□ -0.13
VPS13A-205ENST00000376636 FAM13BQ9NYF5 915 aa14.25□□□□□ -0.13
VPS13A-205ENST00000376636 UTP3Q9NQZ2 479 aaKnown RBP eCLIP14.25□□□□□ -0.136e-7■■■■■ 116.7
VPS13A-205ENST00000376636 HDGFL2Q7Z4V5 671 aaPredicted RBP14.25□□□□□ -0.13
VPS13A-205ENST00000376636 STK11IPQ8N1F8 1099 aa14.25□□□□□ -0.13
VPS13A-205ENST00000376636 CEP162Q5TB80 1403 aa14.25□□□□□ -0.13
VPS13A-205ENST00000376636 KCNH8Q96L42 1107 aa14.25□□□□□ -0.13
VPS13A-205ENST00000376636 RALBP1Q15311 655 aa14.24□□□□□ -0.13
VPS13A-205ENST00000376636 AMOTL1Q8IY63 956 aa14.24□□□□□ -0.13
VPS13A-205ENST00000376636 TOMM22Q9NS69 142 aa14.24□□□□□ -0.13
VPS13A-205ENST00000376636 SMC4Q9NTJ3 1288 aa14.23□□□□□ -0.13
VPS13A-205ENST00000376636 TRIM29Q14134 588 aa14.23□□□□□ -0.13
VPS13A-205ENST00000376636 SYNE3Q6ZMZ3 975 aa14.23□□□□□ -0.13
VPS13A-205ENST00000376636 GOLGA6L7A0A1B0GV03 622 aa14.23□□□□□ -0.13
VPS13A-205ENST00000376636 CPLX2Q6PUV4 134 aaKnown RBP14.23□□□□□ -0.13
VPS13A-205ENST00000376636 MNS1Q8NEH6 495 aa14.23□□□□□ -0.13
VPS13A-205ENST00000376636 ANO8Q9HCE9 1232 aaPredicted RBP14.23□□□□□ -0.13
VPS13A-205ENST00000376636 INCENPQ9NQS7 918 aa14.22□□□□□ -0.13
VPS13A-205ENST00000376636 NOL8Q76FK4 1167 aaKnown RBP14.22□□□□□ -0.13
VPS13A-205ENST00000376636 DIAPH3Q9NSV4 1193 aa14.22□□□□□ -0.13
VPS13A-205ENST00000376636 ZNF330Q9Y3S2 320 aaPredicted RBP14.22□□□□□ -0.13
VPS13A-205ENST00000376636 CAGE1Q8TC20 777 aa14.22□□□□□ -0.13
VPS13A-205ENST00000376636 NAT10Q9H0A0 1025 aaKnown RBP14.21□□□□□ -0.13
VPS13A-205ENST00000376636 FRAT2O75474 233 aaPredicted RBP14.21□□□□□ -0.13
VPS13A-205ENST00000376636 LMOD3Q0VAK6 560 aa14.21□□□□□ -0.13
VPS13A-205ENST00000376636 TIMELESSQ9UNS1 1208 aa14.21□□□□□ -0.14
VPS13A-205ENST00000376636 NAP1L1P55209 391 aaKnown RBP14.2□□□□□ -0.14
VPS13A-205ENST00000376636 LEKR1Q6ZMV7 388 aa14.2□□□□□ -0.14
VPS13A-205ENST00000376636 WWC1Q8IX03 1113 aa14.2□□□□□ -0.14
VPS13A-205ENST00000376636 FAM43AQ8N2R8 423 aa14.2□□□□□ -0.14
VPS13A-205ENST00000376636 SOX12O15370 315 aa14.19□□□□□ -0.14
VPS13A-205ENST00000376636 MCTP1Q6DN14 999 aa14.19□□□□□ -0.14
VPS13A-205ENST00000376636 DCAF11Q8TEB1 546 aa14.19□□□□□ -0.14
VPS13A-205ENST00000376636 EPS15P42566 896 aa14.18□□□□□ -0.14
VPS13A-205ENST00000376636 FHAD1B1AJZ9 1412 aa14.18□□□□□ -0.14
VPS13A-205ENST00000376636 HSP90AB2PQ58FF8 381 aa14.18□□□□□ -0.14
VPS13A-205ENST00000376636 CCDC43Q96MW1 224 aaKnown RBP14.18□□□□□ -0.14
VPS13A-205ENST00000376636 FOXD4L1Q9NU39 408 aa14.18□□□□□ -0.14
VPS13A-205ENST00000376636 U2AF1L5P0DN76 240 aaPredicted RBP14.18□□□□□ -0.14
VPS13A-205ENST00000376636 U2AF1Q01081 240 aaKnown RBP eCLIP14.18□□□□□ -0.143e-6■□□□□ 8.7
VPS13A-205ENST00000376636 IFT57Q9NWB7 429 aa14.17□□□□□ -0.14
VPS13A-205ENST00000376636 REC8O95072 547 aa14.17□□□□□ -0.14
VPS13A-205ENST00000376636 CGNL1Q0VF96 1302 aa14.17□□□□□ -0.14
VPS13A-205ENST00000376636 CCP110O43303 1012 aa14.17□□□□□ -0.14
VPS13A-205ENST00000376636 DYDC1Q8WWB3 177 aa14.17□□□□□ -0.14
VPS13A-205ENST00000376636 CENPJQ9HC77 1338 aaPredicted RBP14.16□□□□□ -0.14
VPS13A-205ENST00000376636 ROCK2O75116 1388 aaKnown RBP14.16□□□□□ -0.14
VPS13A-205ENST00000376636 CEP164Q9UPV0 1460 aa14.16□□□□□ -0.14
VPS13A-205ENST00000376636 ANKRD18AQ8IVF6 992 aa14.16□□□□□ -0.14
VPS13A-205ENST00000376636 TRIM34Q9BYJ4 488 aa14.16□□□□□ -0.14
VPS13A-205ENST00000376636 SASS6Q6UVJ0 657 aa14.16□□□□□ -0.14
VPS13A-205ENST00000376636 FOXD4L5Q5VV16 416 aaPredicted RBP14.15□□□□□ -0.14
VPS13A-205ENST00000376636 FOXD4L4Q8WXT5 416 aaPredicted RBP14.15□□□□□ -0.14
VPS13A-205ENST00000376636 NOL10Q9BSC4 688 aaKnown RBP14.15□□□□□ -0.14
VPS13A-205ENST00000376636 GOLGA6L10A6NI86 522 aa14.15□□□□□ -0.14
VPS13A-205ENST00000376636 RUFY2Q8WXA3 655 aa14.15□□□□□ -0.14
VPS13A-205ENST00000376636 ZKSCAN1P17029 563 aaPredicted RBP14.14□□□□□ -0.15
VPS13A-205ENST00000376636 CTDP1Q9Y5B0 961 aaPredicted RBP14.14□□□□□ -0.15
VPS13A-205ENST00000376636 CENPQQ7L2Z9 268 aaPredicted RBP14.14□□□□□ -0.15
VPS13A-205ENST00000376636 FAM161AQ3B820 660 aa14.14□□□□□ -0.15
VPS13A-205ENST00000376636 USP8P40818 1118 aa14.14□□□□□ -0.15
VPS13A-205ENST00000376636 HSP90AB3PQ58FF7 597 aa14.14□□□□□ -0.15
VPS13A-205ENST00000376636 KIAA0754O94854 1291 aa14.13□□□□□ -0.15
VPS13A-205ENST00000376636 CCNB3Q8WWL7 1395 aa14.13□□□□□ -0.15
VPS13A-205ENST00000376636 CSB-PGBD3P0DP91 1061 aa14.13□□□□□ -0.15
VPS13A-205ENST00000376636 PLCD4Q9BRC7 762 aa14.13□□□□□ -0.15
VPS13A-205ENST00000376636 ERLIN2O94905 339 aa14.12□□□□□ -0.15
VPS13A-205ENST00000376636 SLC4A10Q6U841 1118 aa14.12□□□□□ -0.15
VPS13A-205ENST00000376636 BICD2Q8TD16 824 aa14.12□□□□□ -0.15
VPS13A-205ENST00000376636 CCDC39Q9UFE4 941 aa14.12□□□□□ -0.15
VPS13A-205ENST00000376636 CPLX1O14810 134 aa14.12□□□□□ -0.15
VPS13A-205ENST00000376636 PDE3BQ13370 1112 aa14.12□□□□□ -0.15
VPS13A-205ENST00000376636 TSPYL1Q9H0U9 437 aa14.12□□□□□ -0.15
VPS13A-205ENST00000376636 RNF20Q5VTR2 975 aa14.11□□□□□ -0.15
VPS13A-205ENST00000376636 PAK3O75914 559 aaPredicted RBP14.11□□□□□ -0.15
VPS13A-205ENST00000376636 R3HCC1Q9Y3T6 440 aaKnown RBP14.11□□□□□ -0.15
VPS13A-205ENST00000376636 TAF3Q5VWG9 929 aa14.1□□□□□ -0.15
VPS13A-205ENST00000376636 OFD1O75665 1012 aa14.1□□□□□ -0.15
VPS13A-205ENST00000376636 DHX8Q14562 1220 aaKnown RBP14.1□□□□□ -0.15
VPS13A-205ENST00000376636 OLFM4Q6UX06 510 aa14.1□□□□□ -0.15
VPS13A-205ENST00000376636 ROCK1Q13464 1354 aa14.1□□□□□ -0.15
VPS13A-205ENST00000376636 RILPL2Q969X0 211 aa14.1□□□□□ -0.15
VPS13A-205ENST00000376636 EZRP15311 586 aaKnown RBP14.09□□□□□ -0.15
VPS13A-205ENST00000376636 GTF2E1P29083 439 aaPredicted RBP14.09□□□□□ -0.15
Retrieved 100 of 20,778 RNA–protein pairs in 42.6 ms