RNA–Protein interactions for RNA: ENST00000376634.8

VPS13A-204, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene VPS13A, Length 10,269 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-204ENST00000376634 GPS2Q13227 327 aa15.42■□□□□ 0.06
VPS13A-204ENST00000376634 NOL8Q76FK4 1167 aaKnown RBP15.42■□□□□ 0.06
VPS13A-204ENST00000376634 CCAR2Q8N163 923 aaKnown RBP15.42■□□□□ 0.06
VPS13A-204ENST00000376634 RSPH6AQ9H0K4 717 aa15.42■□□□□ 0.06
VPS13A-204ENST00000376634 PATL2C9JE40 543 aaKnown RBP15.41■□□□□ 0.06
VPS13A-204ENST00000376634 RBM19Q9Y4C8 960 aaKnown RBP15.41■□□□□ 0.06
VPS13A-204ENST00000376634 CCDC9Q9Y3X0 531 aaKnown RBP15.41■□□□□ 0.06
VPS13A-204ENST00000376634 GOLGA6L19H0YKK7 550 aa15.41■□□□□ 0.06
VPS13A-204ENST00000376634 LMOD3Q0VAK6 560 aa15.4■□□□□ 0.06
VPS13A-204ENST00000376634 AKAP17AQ02040 695 aaKnown RBP15.4■□□□□ 0.06
VPS13A-204ENST00000376634 ATP6V1DQ9Y5K8 247 aa15.39■□□□□ 0.05
VPS13A-204ENST00000376634 CHMP4CQ96CF2 233 aa15.38■□□□□ 0.05
VPS13A-204ENST00000376634 SLC4A10Q6U841 1118 aa15.38■□□□□ 0.05
VPS13A-204ENST00000376634 TERF2IPQ9NYB0 399 aa15.38■□□□□ 0.05
VPS13A-204ENST00000376634 GTF2E1P29083 439 aaPredicted RBP15.38■□□□□ 0.05
VPS13A-204ENST00000376634 PHLDB1Q86UU1 1377 aa15.38■□□□□ 0.05
VPS13A-204ENST00000376634 RRP12Q5JTH9 1297 aaKnown RBP15.38■□□□□ 0.05
VPS13A-204ENST00000376634 FBXO3Q9UK99 471 aa15.37■□□□□ 0.05
VPS13A-204ENST00000376634 CNKSR2Q8WXI2 1034 aa15.37■□□□□ 0.05
VPS13A-204ENST00000376634 TRIM34Q9BYJ4 488 aa15.36■□□□□ 0.05
VPS13A-204ENST00000376634 ZNF771Q7L3S4 317 aaPredicted RBP15.36■□□□□ 0.05
VPS13A-204ENST00000376634 LRRFIP1Q32MZ4 808 aaKnown RBP15.35■□□□□ 0.05
VPS13A-204ENST00000376634 IPO7O95373 1038 aaKnown RBP15.35■□□□□ 0.05
VPS13A-204ENST00000376634 TEX35Q5T0J7 233 aa15.35■□□□□ 0.05
VPS13A-204ENST00000376634 FOXD4L1Q9NU39 408 aa15.35■□□□□ 0.05
VPS13A-204ENST00000376634 CENPJQ9HC77 1338 aaPredicted RBP15.35■□□□□ 0.05
VPS13A-204ENST00000376634 AMOTL1Q8IY63 956 aa15.34■□□□□ 0.05
VPS13A-204ENST00000376634 FOXD4L5Q5VV16 416 aaPredicted RBP15.34■□□□□ 0.05
VPS13A-204ENST00000376634 FOXD4L4Q8WXT5 416 aaPredicted RBP15.34■□□□□ 0.05
VPS13A-204ENST00000376634 ANKRD20A12PQ8NF67 263 aa15.33■□□□□ 0.05
VPS13A-204ENST00000376634 CARMIL2Q6F5E8 1435 aa15.33■□□□□ 0.04
VPS13A-204ENST00000376634 FAM184AQ8NB25 1140 aa15.33■□□□□ 0.04
VPS13A-204ENST00000376634 NOL10Q9BSC4 688 aaKnown RBP15.33■□□□□ 0.04
VPS13A-204ENST00000376634 CUX2O14529 1486 aa15.33■□□□□ 0.04
VPS13A-204ENST00000376634 HOOK1Q9UJC3 728 aaKnown RBP15.33■□□□□ 0.04
VPS13A-204ENST00000376634 BECN2A8MW95 431 aa15.33■□□□□ 0.04
VPS13A-204ENST00000376634 IPO9Q96P70 1041 aaKnown RBP15.32■□□□□ 0.04
VPS13A-204ENST00000376634 MCTP1Q6DN14 999 aa15.32■□□□□ 0.04
VPS13A-204ENST00000376634 HSPA5P11021 654 aaKnown RBP15.31■□□□□ 0.04
VPS13A-204ENST00000376634 GGT6Q6P531 493 aa15.31■□□□□ 0.04
VPS13A-204ENST00000376634 CTDP1Q9Y5B0 961 aaPredicted RBP15.31■□□□□ 0.04
VPS13A-204ENST00000376634 PKD2Q13563 968 aa15.3■□□□□ 0.04
VPS13A-204ENST00000376634 TIMELESSQ9UNS1 1208 aa15.3■□□□□ 0.04
VPS13A-204ENST00000376634 AMPHP49418 695 aa15.3■□□□□ 0.04
VPS13A-204ENST00000376634 SYNE3Q6ZMZ3 975 aa15.3■□□□□ 0.04
VPS13A-204ENST00000376634 PCMTD1Q96MG8 357 aaPredicted RBP15.3■□□□□ 0.04
VPS13A-204ENST00000376634 EID1Q9Y6B2 187 aa15.3■□□□□ 0.04
VPS13A-204ENST00000376634 NOM1Q5C9Z4 860 aaKnown RBP15.29■□□□□ 0.04
VPS13A-204ENST00000376634 WWC1Q8IX03 1113 aa15.29■□□□□ 0.04
VPS13A-204ENST00000376634 ANKRD30AQ9BXX3 1397 aa15.28■□□□□ 0.04
VPS13A-204ENST00000376634 FMN1Q68DA7 1419 aa15.28■□□□□ 0.04
VPS13A-204ENST00000376634 TRIM29Q14134 588 aa15.28■□□□□ 0.04
VPS13A-204ENST00000376634 NUP155O75694 1391 aa15.27■□□□□ 0.04
VPS13A-204ENST00000376634 SKOR2Q2VWA4 1001 aaPredicted RBP15.27■□□□□ 0.04
VPS13A-204ENST00000376634 NGDNQ8NEJ9 315 aaKnown RBP15.27■□□□□ 0.04
VPS13A-204ENST00000376634 CCDC18Q5T9S5 1454 aa15.27■□□□□ 0.04
VPS13A-204ENST00000376634 CCDC43Q96MW1 224 aaKnown RBP15.27■□□□□ 0.03
VPS13A-204ENST00000376634 ABCC8Q09428 1581 aa15.27■□□□□ 0.03
VPS13A-204ENST00000376634 RILPL2Q969X0 211 aa15.26■□□□□ 0.03
VPS13A-204ENST00000376634 RAD21O60216 631 aa15.26■□□□□ 0.03
VPS13A-204ENST00000376634 DIAPH3Q9NSV4 1193 aa15.26■□□□□ 0.03
VPS13A-204ENST00000376634 ZNF592Q92610 1267 aa15.25■□□□□ 0.03
VPS13A-204ENST00000376634 RUFY1Q96T51 708 aa15.25■□□□□ 0.03
VPS13A-204ENST00000376634 AK7Q96M32 723 aa15.25■□□□□ 0.03
VPS13A-204ENST00000376634 FOXD1Q16676 465 aa15.25■□□□□ 0.03
VPS13A-204ENST00000376634 SUGP2Q8IX01 1082 aaKnown RBP eCLIP15.25■□□□□ 0.032e-6■■□□□ 12.7
VPS13A-204ENST00000376634 KIF15Q9NS87 1388 aa15.25■□□□□ 0.03
VPS13A-204ENST00000376634 CCDC146Q8IYE0 955 aa15.25■□□□□ 0.03
VPS13A-204ENST00000376634 CARMIL1Q5VZK9 1371 aa15.25■□□□□ 0.03
VPS13A-204ENST00000376634 CCDC47Q96A33 483 aaKnown RBP15.25■□□□□ 0.03
VPS13A-204ENST00000376634 VPS37DQ86XT2 251 aa15.24■□□□□ 0.03
VPS13A-204ENST00000376634 UACAQ9BZF9 1416 aa15.24■□□□□ 0.03
VPS13A-204ENST00000376634 UTP3Q9NQZ2 479 aaKnown RBP eCLIP15.24■□□□□ 0.033e-8■■■■■ 129
VPS13A-204ENST00000376634 SMARCA2P51531 1590 aa15.24■□□□□ 0.03
VPS13A-204ENST00000376634 C1orf141Q5JVX7 400 aa15.23■□□□□ 0.03
VPS13A-204ENST00000376634 CPLX2Q6PUV4 134 aaKnown RBP15.23■□□□□ 0.03
VPS13A-204ENST00000376634 LTV1Q96GA3 475 aaPredicted RBP15.23■□□□□ 0.03
VPS13A-204ENST00000376634 CLUAP1Q96AJ1 413 aa15.23■□□□□ 0.03
VPS13A-204ENST00000376634 CT47A1Q5JQC4 288 aaPredicted RBP15.22■□□□□ 0.03
VPS13A-204ENST00000376634 VPS8Q8N3P4 1428 aa15.22■□□□□ 0.03
VPS13A-204ENST00000376634 ODF2Q5BJF6 829 aa15.22■□□□□ 0.03
VPS13A-204ENST00000376634 RUFY2Q8WXA3 655 aa15.22■□□□□ 0.03
VPS13A-204ENST00000376634 ROCK1Q13464 1354 aa15.22■□□□□ 0.03
VPS13A-204ENST00000376634 VSIG10Q8N0Z9 540 aa15.22■□□□□ 0.03
VPS13A-204ENST00000376634 REC8O95072 547 aa15.21■□□□□ 0.03
VPS13A-204ENST00000376634 FOXD4L6Q3SYB3 417 aaPredicted RBP15.21■□□□□ 0.03
VPS13A-204ENST00000376634 FOXD4L3Q6VB84 417 aaPredicted RBP15.21■□□□□ 0.03
VPS13A-204ENST00000376634 HOMER1Q86YM7 354 aa15.21■□□□□ 0.03
VPS13A-204ENST00000376634 DDX49Q9Y6V7 483 aaKnown RBP15.21■□□□□ 0.03
VPS13A-204ENST00000376634 CDR1P51861 262 aa15.21■□□□□ 0.03
VPS13A-204ENST00000376634 EPS15P42566 896 aa15.21■□□□□ 0.02
VPS13A-204ENST00000376634 NEXNQ0ZGT2 675 aa15.21■□□□□ 0.02
VPS13A-204ENST00000376634 CPLX1O14810 134 aa15.2■□□□□ 0.02
VPS13A-204ENST00000376634 RDXP35241 583 aaKnown RBP15.2■□□□□ 0.02
VPS13A-204ENST00000376634 APPP05067 770 aa15.19■□□□□ 0.02
VPS13A-204ENST00000376634 MAP7D2Q96T17 732 aa15.19■□□□□ 0.02
VPS13A-204ENST00000376634 CWC22Q9HCG8 908 aaKnown RBP15.19■□□□□ 0.02
VPS13A-204ENST00000376634 NAP1L1P55209 391 aaKnown RBP15.19■□□□□ 0.02
VPS13A-204ENST00000376634 CGNL1Q0VF96 1302 aa15.19■□□□□ 0.02
VPS13A-204ENST00000376634 PDE3BQ13370 1112 aa15.19■□□□□ 0.02
Retrieved 100 of 20,778 RNA–protein pairs in 30.4 ms