RNA–Protein interactions for RNA: ENST00000373720.3

SNRNP40-202, Transcript of small nuclear ribonucleoprotein U5 subunit 40, humanhuman

TSL 1 (best) BASIC

Gene SNRNP40, Length 1,087 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNRNP40-202ENST00000373720 PZPP20742 1482 aa12.27□□□□□ -0.45
SNRNP40-202ENST00000373720 ARHGAP5Q13017 1502 aa12.27□□□□□ -0.45
SNRNP40-202ENST00000373720 CDC42BPBQ9Y5S2 1711 aa12.26□□□□□ -0.45
SNRNP40-202ENST00000373720 SAMD9LQ8IVG5 1584 aa12.26□□□□□ -0.45
SNRNP40-202ENST00000373720 DUOX2Q9NRD8 1548 aa12.25□□□□□ -0.45
SNRNP40-202ENST00000373720 KDM6BO15054 1643 aa12.25□□□□□ -0.45
SNRNP40-202ENST00000373720 ZCCHC11Q5TAX3 1644 aaKnown RBP12.25□□□□□ -0.45
SNRNP40-202ENST00000373720 PIP4P2Q8N4L2 257 aa12.24□□□□□ -0.45
SNRNP40-202ENST00000373720 ATP10AO60312 1499 aa12.23□□□□□ -0.45
SNRNP40-202ENST00000373720 TEX14Q8IWB6 1497 aa12.23□□□□□ -0.45
SNRNP40-202ENST00000373720 NUP155O75694 1391 aa12.23□□□□□ -0.45
SNRNP40-202ENST00000373720 UHRF1BP1Q6BDS2 1440 aa12.22□□□□□ -0.45
SNRNP40-202ENST00000373720 ANP32CO43423 234 aa12.21□□□□□ -0.45
SNRNP40-202ENST00000373720 L3MBTL2Q969R5 705 aa12.21□□□□□ -0.45
SNRNP40-202ENST00000373720 UNC13BO14795 1591 aa12.21□□□□□ -0.46
SNRNP40-202ENST00000373720 NPM1P06748 294 aaKnown RBP eCLIP12.2□□□□□ -0.46
SNRNP40-202ENST00000373720 TTC37Q6PGP7 1564 aa12.2□□□□□ -0.46
SNRNP40-202ENST00000373720 HAX1O00165 279 aa12.19□□□□□ -0.46
SNRNP40-202ENST00000373720 HNRNPMP52272 730 aaKnown RBP eCLIP12.19□□□□□ -0.46
SNRNP40-202ENST00000373720 PKD2Q13563 968 aa12.19□□□□□ -0.46
SNRNP40-202ENST00000373720 MAGI2Q86UL8 1455 aa12.19□□□□□ -0.46
SNRNP40-202ENST00000373720 ABCA9Q8IUA7 1624 aa12.19□□□□□ -0.46
SNRNP40-202ENST00000373720 ABCC1P33527 1531 aa12.18□□□□□ -0.46
SNRNP40-202ENST00000373720 SYCP2Q9BX26 1530 aa12.17□□□□□ -0.46
SNRNP40-202ENST00000373720 PITPNM1O00562 1244 aa12.17□□□□□ -0.46
SNRNP40-202ENST00000373720 ERCC6L2Q5T890 1561 aa12.17□□□□□ -0.46
SNRNP40-202ENST00000373720 CFAP74Q9C0B2 1584 aa12.17□□□□□ -0.46
SNRNP40-202ENST00000373720 ROCK2O75116 1388 aaKnown RBP12.17□□□□□ -0.46
SNRNP40-202ENST00000373720 IQGAP3Q86VI3 1631 aa12.16□□□□□ -0.46
SNRNP40-202ENST00000373720 SLC24A1O60721 1099 aa12.16□□□□□ -0.46
SNRNP40-202ENST00000373720 FAM135AQ9P2D6 1515 aa12.16□□□□□ -0.46
SNRNP40-202ENST00000373720 NEURL4Q96JN8 1562 aa12.14□□□□□ -0.47
SNRNP40-202ENST00000373720 SPATA31E1Q6ZUB1 1445 aa12.14□□□□□ -0.47
SNRNP40-202ENST00000373720 DDX10Q13206 875 aaKnown RBP12.13□□□□□ -0.47
SNRNP40-202ENST00000373720 SPAG9O60271 1321 aaKnown RBP12.12□□□□□ -0.47
SNRNP40-202ENST00000373720 CCDC144AA2RUR9 1427 aa12.12□□□□□ -0.47
SNRNP40-202ENST00000373720 EIF2AK4Q9P2K8 1649 aaKnown RBP12.12□□□□□ -0.47
SNRNP40-202ENST00000373720 FXR2P51116 673 aaKnown RBP eCLIP12.12□□□□□ -0.47
SNRNP40-202ENST00000373720 DNAJC5Q9H3Z4 198 aa12.12□□□□□ -0.47
SNRNP40-202ENST00000373720 KANK1Q14678 1352 aa12.12□□□□□ -0.47
SNRNP40-202ENST00000373720 KTN1Q86UP2 1357 aaKnown RBP12.12□□□□□ -0.47
SNRNP40-202ENST00000373720 RALGAPBQ86X10 1494 aa12.12□□□□□ -0.47
SNRNP40-202ENST00000373720 POLR1AO95602 1720 aaPredicted RBP12.11□□□□□ -0.47
SNRNP40-202ENST00000373720 FANCAO15360 1455 aa12.11□□□□□ -0.47
SNRNP40-202ENST00000373720 HSPA5P11021 654 aaKnown RBP12.11□□□□□ -0.47
SNRNP40-202ENST00000373720 KCNH8Q96L42 1107 aa12.11□□□□□ -0.47
SNRNP40-202ENST00000373720 ZBTB22O15209 634 aa12.09□□□□□ -0.47
SNRNP40-202ENST00000373720 ASXL2Q76L83 1435 aa12.09□□□□□ -0.47
SNRNP40-202ENST00000373720 ZNF518AQ6AHZ1 1483 aa12.08□□□□□ -0.47
SNRNP40-202ENST00000373720 LAMC1P11047 1609 aa12.08□□□□□ -0.48
SNRNP40-202ENST00000373720 ATXN8OSP0DMR3 200 aa12.08□□□□□ -0.48
SNRNP40-202ENST00000373720 CNTLNQ9NXG0 1405 aa12.08□□□□□ -0.48
SNRNP40-202ENST00000373720 CCDC7Q96M83 1385 aa12.07□□□□□ -0.48
SNRNP40-202ENST00000373720 DEPDC5O75140 1603 aa12.07□□□□□ -0.48
SNRNP40-202ENST00000373720 NEO1Q92859 1461 aa12.07□□□□□ -0.48
SNRNP40-202ENST00000373720 ZFYVE16Q7Z3T8 1539 aa12.06□□□□□ -0.48
SNRNP40-202ENST00000373720 DHX29Q7Z478 1369 aaKnown RBP12.06□□□□□ -0.48
SNRNP40-202ENST00000373720 INO80Q9ULG1 1556 aaPredicted RBP12.06□□□□□ -0.48
SNRNP40-202ENST00000373720 ADGRL1O94910 1474 aa12.06□□□□□ -0.48
SNRNP40-202ENST00000373720 WASHC2AQ641Q2 1341 aa12.06□□□□□ -0.48
SNRNP40-202ENST00000373720 ATP7AQ04656 1500 aa12.06□□□□□ -0.48
SNRNP40-202ENST00000373720 GPRASP1Q5JY77 1395 aa12.05□□□□□ -0.48
SNRNP40-202ENST00000373720 NBPF8Q3BBV2 869 aa12.05□□□□□ -0.48
SNRNP40-202ENST00000373720 PELP1Q8IZL8 1130 aaKnown RBP12.05□□□□□ -0.48
SNRNP40-202ENST00000373720 WASHC2CQ9Y4E1 1318 aa12.05□□□□□ -0.48
SNRNP40-202ENST00000373720 PTPRTO14522 1441 aa12.04□□□□□ -0.48
SNRNP40-202ENST00000373720 TRAPPC8Q9Y2L5 1435 aa12.04□□□□□ -0.48
SNRNP40-202ENST00000373720 MLH3Q9UHC1 1453 aa12.04□□□□□ -0.48
SNRNP40-202ENST00000373720 PRDM15P57071 1507 aaPredicted RBP12.04□□□□□ -0.48
SNRNP40-202ENST00000373720 USP47Q96K76 1375 aa12.04□□□□□ -0.48
SNRNP40-202ENST00000373720 LMTK2Q8IWU2 1503 aa12.03□□□□□ -0.48
SNRNP40-202ENST00000373720 GTF3C3Q9Y5Q9 886 aa12.03□□□□□ -0.48
SNRNP40-202ENST00000373720 VWDEQ8N2E2 1590 aa12.03□□□□□ -0.48
SNRNP40-202ENST00000373720 SCAPERQ9BY12 1400 aa12.03□□□□□ -0.48
SNRNP40-202ENST00000373720 SPDYE2BA6NHP3 402 aa12.02□□□□□ -0.49
SNRNP40-202ENST00000373720 SPDYE6P0CI01 402 aa12.02□□□□□ -0.49
SNRNP40-202ENST00000373720 SPDYE2Q495Y8 402 aa12.02□□□□□ -0.49
SNRNP40-202ENST00000373720 TET3O43151 1660 aa12.02□□□□□ -0.49
SNRNP40-202ENST00000373720 TRPM2O94759 1503 aa12.01□□□□□ -0.49
SNRNP40-202ENST00000373720 KDM5CP41229 1560 aa12.01□□□□□ -0.49
SNRNP40-202ENST00000373720 BCORL1Q5H9F3 1711 aa12.01□□□□□ -0.49
SNRNP40-202ENST00000373720 YTHDC1Q96MU7 727 aaKnown RBP12.01□□□□□ -0.49
SNRNP40-202ENST00000373720 CARD11Q9BXL7 1154 aa12.01□□□□□ -0.49
SNRNP40-202ENST00000373720 CD109Q6YHK3 1445 aa12.01□□□□□ -0.49
SNRNP40-202ENST00000373720 PRAG1Q86YV5 1406 aa12.01□□□□□ -0.49
SNRNP40-202ENST00000373720 DCAF11Q8TEB1 546 aa11.99□□□□□ -0.49
SNRNP40-202ENST00000373720 PLA2R1Q13018 1463 aa11.99□□□□□ -0.49
SNRNP40-202ENST00000373720 GLI2P10070 1586 aa11.99□□□□□ -0.49
SNRNP40-202ENST00000373720 KIF7Q2M1P5 1343 aa11.98□□□□□ -0.49
SNRNP40-202ENST00000373720 CDCA8Q53HL2 280 aa11.98□□□□□ -0.49
SNRNP40-202ENST00000373720 POGZQ7Z3K3 1410 aa11.97□□□□□ -0.49
SNRNP40-202ENST00000373720 PRKRIP1Q9H875 184 aaPredicted RBP11.97□□□□□ -0.49
SNRNP40-202ENST00000373720 AFAP1Q8N556 730 aa11.96□□□□□ -0.49
SNRNP40-202ENST00000373720 TRPM1Q7Z4N2 1603 aa11.96□□□□□ -0.5
SNRNP40-202ENST00000373720 RNF17Q9BXT8 1623 aaKnown RBP11.96□□□□□ -0.5
SNRNP40-202ENST00000373720 A2MP01023 1474 aa11.95□□□□□ -0.5
SNRNP40-202ENST00000373720 ERICH6BQ5W0A0 696 aa11.95□□□□□ -0.5
SNRNP40-202ENST00000373720 CLEC11AQ9Y240 323 aa11.95□□□□□ -0.5
SNRNP40-202ENST00000373720 KIAA1210Q9ULL0 1709 aa11.94□□□□□ -0.5
SNRNP40-202ENST00000373720 RALBP1Q15311 655 aa11.94□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 162.5 ms