RNA–Protein interactions for RNA: ENST00000367256.9

SYNE1-208, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best)

Gene SYNE1, Length 10,742 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-208ENST00000367256 TPM1P09493 284 aa9.03□□□□□ -0.96
SYNE1-208ENST00000367256 HDGFP51858 240 aaKnown RBP9.03□□□□□ -0.96
SYNE1-208ENST00000367256 FOXD4L5Q5VV16 416 aaPredicted RBP9.03□□□□□ -0.96
SYNE1-208ENST00000367256 FOXD4L4Q8WXT5 416 aaPredicted RBP9.03□□□□□ -0.96
SYNE1-208ENST00000367256 H3BQV1 296 aa9.02□□□□□ -0.96
SYNE1-208ENST00000367256 GSE1Q14687 1217 aa9.02□□□□□ -0.96
SYNE1-208ENST00000367256 TAF7LQ5H9L4 462 aa9.02□□□□□ -0.96
SYNE1-208ENST00000367256 IFFO2Q5TF58 517 aa9.02□□□□□ -0.96
SYNE1-208ENST00000367256 U2AF1L5P0DN76 240 aaPredicted RBP9.02□□□□□ -0.96
SYNE1-208ENST00000367256 HSPA5P11021 654 aaKnown RBP9.02□□□□□ -0.96
SYNE1-208ENST00000367256 U2AF1Q01081 240 aaKnown RBP eCLIP9.02□□□□□ -0.96
SYNE1-208ENST00000367256 NLRP13Q86W25 1043 aa9.02□□□□□ -0.96
SYNE1-208ENST00000367256 SMC4Q9NTJ3 1288 aa9.02□□□□□ -0.96
SYNE1-208ENST00000367256 CENPQQ7L2Z9 268 aaPredicted RBP9.02□□□□□ -0.97
SYNE1-208ENST00000367256 MAP7D2Q96T17 732 aa9.02□□□□□ -0.97
SYNE1-208ENST00000367256 NGEFQ8N5V2 710 aa9.01□□□□□ -0.97
SYNE1-208ENST00000367256 KIF15Q9NS87 1388 aa9.01□□□□□ -0.97
SYNE1-208ENST00000367256 ZBED9Q6R2W3 1325 aa9.01□□□□□ -0.97
SYNE1-208ENST00000367256 PAK3O75914 559 aaPredicted RBP9.01□□□□□ -0.97
SYNE1-208ENST00000367256 PDZRN4Q6ZMN7 1036 aaPredicted RBP9.01□□□□□ -0.97
SYNE1-208ENST00000367256 TEX35Q5T0J7 233 aa9.01□□□□□ -0.97
SYNE1-208ENST00000367256 CSB-PGBD3P0DP91 1061 aa9.01□□□□□ -0.97
SYNE1-208ENST00000367256 RAB3GAP2Q9H2M9 1393 aa9.01□□□□□ -0.97
SYNE1-208ENST00000367256 GOLGA6L19H0YKK7 550 aa9.01□□□□□ -0.97
SYNE1-208ENST00000367256 MARCH6O60337 910 aa9□□□□□ -0.97
SYNE1-208ENST00000367256 TOMM22Q9NS69 142 aa9□□□□□ -0.97
SYNE1-208ENST00000367256 FBXO3Q9UK99 471 aa9□□□□□ -0.97
SYNE1-208ENST00000367256 SF3A1Q15459 793 aaKnown RBP9□□□□□ -0.97
SYNE1-208ENST00000367256 TCEAL9Q9UHQ7 104 aa9□□□□□ -0.97
SYNE1-208ENST00000367256 CENPJQ9HC77 1338 aaPredicted RBP9□□□□□ -0.97
SYNE1-208ENST00000367256 FAM161AQ3B820 660 aa9□□□□□ -0.97
SYNE1-208ENST00000367256 AAMPQ13685 434 aa8.99□□□□□ -0.97
SYNE1-208ENST00000367256 LMOD3Q0VAK6 560 aa8.99□□□□□ -0.97
SYNE1-208ENST00000367256 RRP12Q5JTH9 1297 aaKnown RBP8.99□□□□□ -0.97
SYNE1-208ENST00000367256 STK26Q9P289 416 aa8.99□□□□□ -0.97
SYNE1-208ENST00000367256 G3V3G9 751 aa8.98□□□□□ -0.97
SYNE1-208ENST00000367256 DCAF8Q5TAQ9 597 aa8.98□□□□□ -0.97
SYNE1-208ENST00000367256 ZNF592Q92610 1267 aa8.98□□□□□ -0.97
SYNE1-208ENST00000367256 CARMIL1Q5VZK9 1371 aa8.98□□□□□ -0.97
SYNE1-208ENST00000367256 CGNL1Q0VF96 1302 aa8.98□□□□□ -0.97
SYNE1-208ENST00000367256 BECN2A8MW95 431 aa8.97□□□□□ -0.97
SYNE1-208ENST00000367256 NOM1Q5C9Z4 860 aaKnown RBP8.97□□□□□ -0.97
SYNE1-208ENST00000367256 SLC4A10Q6U841 1118 aa8.97□□□□□ -0.97
SYNE1-208ENST00000367256 ANKRD30AQ9BXX3 1397 aa8.96□□□□□ -0.97
SYNE1-208ENST00000367256 IPO7O95373 1038 aaKnown RBP8.96□□□□□ -0.97
SYNE1-208ENST00000367256 SMARCA2P51531 1590 aa8.96□□□□□ -0.97
SYNE1-208ENST00000367256 MCTP1Q6DN14 999 aa8.96□□□□□ -0.98
SYNE1-208ENST00000367256 VSIG10Q8N0Z9 540 aa8.96□□□□□ -0.98
SYNE1-208ENST00000367256 AK7Q96M32 723 aa8.96□□□□□ -0.98
SYNE1-208ENST00000367256 AKAP17AQ02040 695 aaKnown RBP8.96□□□□□ -0.98
SYNE1-208ENST00000367256 ANKRD20A12PQ8NF67 263 aa8.95□□□□□ -0.98
SYNE1-208ENST00000367256 MLECQ14165 292 aa8.95□□□□□ -0.98
SYNE1-208ENST00000367256 MYBBP1AQ9BQG0 1328 aaKnown RBP8.95□□□□□ -0.98
SYNE1-208ENST00000367256 CUX2O14529 1486 aa8.95□□□□□ -0.98
SYNE1-208ENST00000367256 RUFY1Q96T51 708 aa8.95□□□□□ -0.98
SYNE1-208ENST00000367256 PCMTD1Q96MG8 357 aaPredicted RBP8.94□□□□□ -0.98
SYNE1-208ENST00000367256 FRAT2O75474 233 aaPredicted RBP8.94□□□□□ -0.98
SYNE1-208ENST00000367256 CCDC146Q8IYE0 955 aa8.94□□□□□ -0.98
SYNE1-208ENST00000367256 FAM184AQ8NB25 1140 aa8.94□□□□□ -0.98
SYNE1-208ENST00000367256 CCDC18Q5T9S5 1454 aa8.94□□□□□ -0.98
SYNE1-208ENST00000367256 HOOK1Q9UJC3 728 aaKnown RBP8.94□□□□□ -0.98
SYNE1-208ENST00000367256 DDX49Q9Y6V7 483 aaKnown RBP8.94□□□□□ -0.98
SYNE1-208ENST00000367256 PDE4AP27815 886 aa8.94□□□□□ -0.98
SYNE1-208ENST00000367256 TERF2IPQ9NYB0 399 aa8.94□□□□□ -0.98
SYNE1-208ENST00000367256 PRDM2Q13029 1718 aa8.94□□□□□ -0.98
SYNE1-208ENST00000367256 PKD2Q13563 968 aa8.93□□□□□ -0.98
SYNE1-208ENST00000367256 CLUAP1Q96AJ1 413 aa8.93□□□□□ -0.98
SYNE1-208ENST00000367256 FOXD4L6Q3SYB3 417 aaPredicted RBP8.92□□□□□ -0.98
SYNE1-208ENST00000367256 FOXD4L3Q6VB84 417 aaPredicted RBP8.92□□□□□ -0.98
SYNE1-208ENST00000367256 HOMER1Q86YM7 354 aa8.92□□□□□ -0.98
SYNE1-208ENST00000367256 REC8O95072 547 aa8.92□□□□□ -0.98
SYNE1-208ENST00000367256 FOXD1Q16676 465 aa8.92□□□□□ -0.98
SYNE1-208ENST00000367256 KRI1Q8N9T8 703 aaKnown RBP8.92□□□□□ -0.98
SYNE1-208ENST00000367256 DIAPH3Q9NSV4 1193 aa8.92□□□□□ -0.98
SYNE1-208ENST00000367256 CCDC9Q9Y3X0 531 aaKnown RBP8.92□□□□□ -0.98
SYNE1-208ENST00000367256 UACAQ9BZF9 1416 aa8.92□□□□□ -0.98
SYNE1-208ENST00000367256 RILPL2Q969X0 211 aa8.91□□□□□ -0.98
SYNE1-208ENST00000367256 ACBD3Q9H3P7 528 aa8.91□□□□□ -0.98
SYNE1-208ENST00000367256 CDR1P51861 262 aa8.91□□□□□ -0.98
SYNE1-208ENST00000367256 FAM13BQ9NYF5 915 aa8.91□□□□□ -0.98
SYNE1-208ENST00000367256 SOGA1O94964 1423 aa8.91□□□□□ -0.98
SYNE1-208ENST00000367256 ABCC8Q09428 1581 aa8.91□□□□□ -0.98
SYNE1-208ENST00000367256 CARMIL2Q6F5E8 1435 aa8.91□□□□□ -0.98
SYNE1-208ENST00000367256 TRIM34Q9BYJ4 488 aa8.91□□□□□ -0.98
SYNE1-208ENST00000367256 ARGLU1Q9NWB6 273 aaPredicted RBP8.91□□□□□ -0.98
SYNE1-208ENST00000367256 TOP2AP11388 1531 aaKnown RBP8.91□□□□□ -0.98
SYNE1-208ENST00000367256 WWC1Q8IX03 1113 aa8.91□□□□□ -0.98
SYNE1-208ENST00000367256 TRIM29Q14134 588 aa8.91□□□□□ -0.98
SYNE1-208ENST00000367256 ROCK1Q13464 1354 aa8.91□□□□□ -0.98
SYNE1-208ENST00000367256 AMOTL1Q8IY63 956 aa8.91□□□□□ -0.98
SYNE1-208ENST00000367256 RRP1P56182 461 aaKnown RBP8.91□□□□□ -0.98
SYNE1-208ENST00000367256 E9PSI1 815 aa8.9□□□□□ -0.98
SYNE1-208ENST00000367256 FAM43AQ8N2R8 423 aa8.9□□□□□ -0.98
SYNE1-208ENST00000367256 SYNE3Q6ZMZ3 975 aa8.9□□□□□ -0.98
SYNE1-208ENST00000367256 MPHOSPH9Q99550 1183 aa8.9□□□□□ -0.98
SYNE1-208ENST00000367256 RSPH4AQ5TD94 716 aa8.9□□□□□ -0.98
SYNE1-208ENST00000367256 LRRFIP1Q32MZ4 808 aaKnown RBP8.9□□□□□ -0.98
SYNE1-208ENST00000367256 CHMP5Q9NZZ3 219 aa8.9□□□□□ -0.98
SYNE1-208ENST00000367256 NUP155O75694 1391 aa8.9□□□□□ -0.99
SYNE1-208ENST00000367256 ANO2Q9NQ90 1003 aa8.9□□□□□ -0.99
Retrieved 100 of 20,778 RNA–protein pairs in 35.2 ms