RNA–Protein interactions for RNA: ENST00000360535.8

CLIP3-201, Transcript of CAP-Gly domain containing linker protein 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLIP3, Length 3,370 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3-201ENST00000360535 ITSN2Q9NZM3 1697 aa16.16■□□□□ 0.18
CLIP3-201ENST00000360535 ARID4BQ4LE39 1312 aaPredicted RBP16.16■□□□□ 0.18
CLIP3-201ENST00000360535 CEP170Q5SW79 1584 aa16.16■□□□□ 0.18
CLIP3-201ENST00000360535 NLRP13Q86W25 1043 aa16.16■□□□□ 0.18
CLIP3-201ENST00000360535 KTN1Q86UP2 1357 aaKnown RBP16.16■□□□□ 0.18
CLIP3-201ENST00000360535 IPO9Q96P70 1041 aaKnown RBP16.15■□□□□ 0.18
CLIP3-201ENST00000360535 PANK3Q9H999 370 aa16.15■□□□□ 0.18
CLIP3-201ENST00000360535 ADGBQ8N7X0 1667 aa16.15■□□□□ 0.18
CLIP3-201ENST00000360535 ATP10BO94823 1461 aa16.14■□□□□ 0.17
CLIP3-201ENST00000360535 RALGAPBQ86X10 1494 aa16.14■□□□□ 0.17
CLIP3-201ENST00000360535 RTL5Q5HYW3 569 aaPredicted RBP16.14■□□□□ 0.17
CLIP3-201ENST00000360535 RNF123Q5XPI4 1314 aa16.14■□□□□ 0.17
CLIP3-201ENST00000360535 MAGI1Q96QZ7 1491 aaPredicted RBP16.14■□□□□ 0.17
CLIP3-201ENST00000360535 LAS1LQ9Y4W2 734 aaKnown RBP16.13■□□□□ 0.17
CLIP3-201ENST00000360535 ADGRL2O95490 1459 aa16.13■□□□□ 0.17
CLIP3-201ENST00000360535 BRD4O60885 1362 aaPredicted RBP16.13■□□□□ 0.17
CLIP3-201ENST00000360535 CCDC144AA2RUR9 1427 aa16.13■□□□□ 0.17
CLIP3-201ENST00000360535 SYNJ2O15056 1496 aa16.11■□□□□ 0.17
CLIP3-201ENST00000360535 UHRF1BP1Q6BDS2 1440 aa16.09■□□□□ 0.17
CLIP3-201ENST00000360535 MYT1LQ9UL68 1186 aa16.09■□□□□ 0.17
CLIP3-201ENST00000360535 CDC42BPAQ5VT25 1732 aa16.09■□□□□ 0.17
CLIP3-201ENST00000360535 PTPRGP23470 1445 aa16.08■□□□□ 0.17
CLIP3-201ENST00000360535 LRPPRCP42704 1394 aaKnown RBP16.08■□□□□ 0.17
CLIP3-201ENST00000360535 CRBNQ96SW2 442 aa16.08■□□□□ 0.16
CLIP3-201ENST00000360535 PDE4AP27815 886 aa16.07■□□□□ 0.16
CLIP3-201ENST00000360535 DISP3Q9P2K9 1392 aa16.07■□□□□ 0.16
CLIP3-201ENST00000360535 CROCC2H7BZ55 1655 aa16.07■□□□□ 0.16
CLIP3-201ENST00000360535 PER1O15534 1290 aaPredicted RBP16.06■□□□□ 0.16
CLIP3-201ENST00000360535 TMF1P82094 1093 aa16.05■□□□□ 0.16
CLIP3-201ENST00000360535 ABCC10Q5T3U5 1492 aa16.05■□□□□ 0.16
CLIP3-201ENST00000360535 C20orf194Q5TEA3 1177 aa16.04■□□□□ 0.16
CLIP3-201ENST00000360535 ADAMTS8Q9UP79 889 aa16.04■□□□□ 0.16
CLIP3-201ENST00000360535 FAM135AQ9P2D6 1515 aa16.03■□□□□ 0.16
CLIP3-201ENST00000360535 PRAG1Q86YV5 1406 aa16.02■□□□□ 0.16
CLIP3-201ENST00000360535 WDR43Q15061 677 aaKnown RBP eCLIP16.02■□□□□ 0.16
CLIP3-201ENST00000360535 TCERG1O14776 1098 aaKnown RBP16.02■□□□□ 0.15
CLIP3-201ENST00000360535 TESK2Q96S53 571 aa16.02■□□□□ 0.15
CLIP3-201ENST00000360535 KNSTRNQ9Y448 316 aa16.02■□□□□ 0.15
CLIP3-201ENST00000360535 CCDC146Q8IYE0 955 aa16.01■□□□□ 0.15
CLIP3-201ENST00000360535 ARHGEF12Q9NZN5 1544 aa16.01■□□□□ 0.15
CLIP3-201ENST00000360535 PARD3Q8TEW0 1356 aa16.01■□□□□ 0.15
CLIP3-201ENST00000360535 ADCY10Q96PN6 1610 aa16■□□□□ 0.15
CLIP3-201ENST00000360535 PDE3BQ13370 1112 aa16■□□□□ 0.15
CLIP3-201ENST00000360535 CCDC141Q6ZP82 1450 aa16■□□□□ 0.15
CLIP3-201ENST00000360535 SLC4A3P48751 1232 aa16■□□□□ 0.15
CLIP3-201ENST00000360535 PLEKHH2Q8IVE3 1493 aa15.99■□□□□ 0.15
CLIP3-201ENST00000360535 ARHGAP5Q13017 1502 aa15.99■□□□□ 0.15
CLIP3-201ENST00000360535 NUP160Q12769 1436 aa15.99■□□□□ 0.15
CLIP3-201ENST00000360535 NEFMP07197 916 aa15.99■□□□□ 0.15
CLIP3-201ENST00000360535 SHANK2Q9UPX8 1470 aa15.98■□□□□ 0.15
CLIP3-201ENST00000360535 BACH2Q9BYV9 841 aa15.97■□□□□ 0.15
CLIP3-201ENST00000360535 SYCP2Q9BX26 1530 aa15.97■□□□□ 0.15
CLIP3-201ENST00000360535 ERBINQ96RT1 1412 aa15.97■□□□□ 0.15
CLIP3-201ENST00000360535 ABCA8O94911 1581 aa15.97■□□□□ 0.15
CLIP3-201ENST00000360535 A2MP01023 1474 aa15.97■□□□□ 0.15
CLIP3-201ENST00000360535 RGS3P49796 1198 aa15.96■□□□□ 0.15
CLIP3-201ENST00000360535 RSPH4AQ5TD94 716 aa15.96■□□□□ 0.15
CLIP3-201ENST00000360535 KDM5DQ9BY66 1539 aa15.95■□□□□ 0.14
CLIP3-201ENST00000360535 PLA2R1Q13018 1463 aa15.95■□□□□ 0.14
CLIP3-201ENST00000360535 SAMD9LQ8IVG5 1584 aa15.95■□□□□ 0.14
CLIP3-201ENST00000360535 RTN4Q9NQC3 1192 aaKnown RBP15.94■□□□□ 0.14
CLIP3-201ENST00000360535 PPP2R1AP30153 589 aa15.93■□□□□ 0.14
CLIP3-201ENST00000360535 SENP3Q9H4L4 574 aaPredicted RBP15.93■□□□□ 0.14
CLIP3-201ENST00000360535 AFAP1Q8N556 730 aa15.93■□□□□ 0.14
CLIP3-201ENST00000360535 DAXXQ9UER7 740 aaPredicted RBP15.92■□□□□ 0.14
CLIP3-201ENST00000360535 TNNT2P45379 298 aaPredicted RBP15.92■□□□□ 0.14
CLIP3-201ENST00000360535 PRKCSHP14314 528 aaPredicted RBP15.91■□□□□ 0.14
CLIP3-201ENST00000360535 TRPM1Q7Z4N2 1603 aa15.91■□□□□ 0.14
CLIP3-201ENST00000360535 CDC42BPBQ9Y5S2 1711 aa15.9■□□□□ 0.14
CLIP3-201ENST00000360535 NEUROD2Q15784 382 aa15.9■□□□□ 0.14
CLIP3-201ENST00000360535 COL17A1Q9UMD9 1497 aaPredicted RBP15.9■□□□□ 0.14
CLIP3-201ENST00000360535 CHGAP10645 457 aaKnown RBP15.9■□□□□ 0.14
CLIP3-201ENST00000360535 APAF1O14727 1248 aa15.89■□□□□ 0.13
CLIP3-201ENST00000360535 GOLGA2Q08379 1002 aa15.89■□□□□ 0.13
CLIP3-201ENST00000360535 PLEKHH1Q9ULM0 1364 aa15.88■□□□□ 0.13
CLIP3-201ENST00000360535 EFCAB2Q5VUJ9 269 aa15.87■□□□□ 0.13
CLIP3-201ENST00000360535 E9PCH4 1651 aa15.87■□□□□ 0.13
CLIP3-201ENST00000360535 MS4A1P11836 297 aa15.87■□□□□ 0.13
CLIP3-201ENST00000360535 ARHGEF5Q12774 1597 aa15.87■□□□□ 0.13
CLIP3-201ENST00000360535 DUSP27Q5VZP5 1158 aa15.86■□□□□ 0.13
CLIP3-201ENST00000360535 WASHC2CQ9Y4E1 1318 aa15.86■□□□□ 0.13
CLIP3-201ENST00000360535 BCAR3O75815 825 aa15.86■□□□□ 0.13
CLIP3-201ENST00000360535 TTC37Q6PGP7 1564 aa15.85■□□□□ 0.13
CLIP3-201ENST00000360535 SPINK5Q9NQ38 1064 aaPredicted RBP15.85■□□□□ 0.13
CLIP3-201ENST00000360535 GPRASP1Q5JY77 1395 aa15.85■□□□□ 0.13
CLIP3-201ENST00000360535 SPAG9O60271 1321 aaKnown RBP15.85■□□□□ 0.13
CLIP3-201ENST00000360535 CANXP27824 592 aaKnown RBP15.84■□□□□ 0.13
CLIP3-201ENST00000360535 AMER1Q5JTC6 1135 aaPredicted RBP15.84■□□□□ 0.13
CLIP3-201ENST00000360535 CFAP70Q5T0N1 1121 aa15.84■□□□□ 0.13
CLIP3-201ENST00000360535 IL27Q8NEV9 243 aa15.84■□□□□ 0.13
CLIP3-201ENST00000360535 MAGI2Q86UL8 1455 aa15.84■□□□□ 0.13
CLIP3-201ENST00000360535 KIF3BO15066 747 aa15.84■□□□□ 0.13
CLIP3-201ENST00000360535 PREX2Q70Z35 1606 aa15.83■□□□□ 0.12
CLIP3-201ENST00000360535 GOLGA6L2Q8N9W4 650 aaPredicted RBP15.83■□□□□ 0.12
CLIP3-201ENST00000360535 BLMP54132 1417 aaPredicted RBP15.82■□□□□ 0.12
CLIP3-201ENST00000360535 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP15.82■□□□□ 0.12
CLIP3-201ENST00000360535 RRP7AQ9Y3A4 280 aaKnown RBP15.82■□□□□ 0.12
CLIP3-201ENST00000360535 CDCA8Q53HL2 280 aa15.81■□□□□ 0.12
CLIP3-201ENST00000360535 FRAT1Q92837 279 aaPredicted RBP15.81■□□□□ 0.12
CLIP3-201ENST00000360535 TRAPPC8Q9Y2L5 1435 aa15.8■□□□□ 0.12
Retrieved 100 of 20,778 RNA–protein pairs in 25.2 ms