RNA–Protein interactions for RNA: ENST00000360001.10

SDF4-202, Transcript of stromal cell derived factor 4, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SDF4, Length 1,956 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDF4-202ENST00000360001 IQGAP3Q86VI3 1631 aa33.7■■■□□ 2.99
SDF4-202ENST00000360001 EIF2AK4Q9P2K8 1649 aaKnown RBP33.7■■■□□ 2.99
SDF4-202ENST00000360001 ABCA6Q8N139 1617 aa33.69■■■□□ 2.98
SDF4-202ENST00000360001 PKD2Q13563 968 aa33.69■■■□□ 2.98
SDF4-202ENST00000360001 DEPDC5O75140 1603 aa33.67■■■□□ 2.98
SDF4-202ENST00000360001 A2MP01023 1474 aa33.67■■■□□ 2.98
SDF4-202ENST00000360001 TIMELESSQ9UNS1 1208 aa33.66■■■□□ 2.98
SDF4-202ENST00000360001 GRWD1Q9BQ67 446 aaKnown RBP eCLIP33.65■■■□□ 2.986e-9■■□□□ 12.6
SDF4-202ENST00000360001 ZMYM4Q5VZL5 1548 aa33.65■■■□□ 2.98
SDF4-202ENST00000360001 DIP2CQ9Y2E4 1556 aa33.62■■■□□ 2.97
SDF4-202ENST00000360001 KIF3BO15066 747 aa33.58■■■□□ 2.97
SDF4-202ENST00000360001 YEATS2Q9ULM3 1422 aa33.57■■■□□ 2.96
SDF4-202ENST00000360001 MROH1Q8NDA8 1641 aa33.57■■■□□ 2.96
SDF4-202ENST00000360001 TONSLQ96HA7 1378 aa33.56■■■□□ 2.96
SDF4-202ENST00000360001 COL17A1Q9UMD9 1497 aaPredicted RBP33.55■■■□□ 2.96
SDF4-202ENST00000360001 PRDM15P57071 1507 aaPredicted RBP33.55■■■□□ 2.96
SDF4-202ENST00000360001 RPRD2Q5VT52 1461 aaKnown RBP33.55■■■□□ 2.96
SDF4-202ENST00000360001 VWDEQ8N2E2 1590 aa33.55■■■□□ 2.96
SDF4-202ENST00000360001 BCORL1Q5H9F3 1711 aa33.54■■■□□ 2.96
SDF4-202ENST00000360001 RNF17Q9BXT8 1623 aaKnown RBP33.53■■■□□ 2.96
SDF4-202ENST00000360001 KANK1Q14678 1352 aa33.47■■■□□ 2.95
SDF4-202ENST00000360001 PPP1R15AO75807 674 aaPredicted RBP33.45■■■□□ 2.95
SDF4-202ENST00000360001 TET3O43151 1660 aa33.44■■■□□ 2.94
SDF4-202ENST00000360001 TRHP20396 242 aaPredicted RBP33.43■■■□□ 2.94
SDF4-202ENST00000360001 E9PCH4 1651 aa33.42■■■□□ 2.94
SDF4-202ENST00000360001 PLA2R1Q13018 1463 aa33.41■■■□□ 2.94
SDF4-202ENST00000360001 ATP10AO60312 1499 aa33.4■■■□□ 2.94
SDF4-202ENST00000360001 REREQ9P2R6 1566 aa33.38■■■□□ 2.93
SDF4-202ENST00000360001 LMTK2Q8IWU2 1503 aa33.38■■■□□ 2.93
SDF4-202ENST00000360001 L3MBTL2Q969R5 705 aa33.35■■■□□ 2.93
SDF4-202ENST00000360001 ARHGEF40Q8TER5 1519 aa33.35■■■□□ 2.93
SDF4-202ENST00000360001 CEP152O94986 1710 aa33.34■■■□□ 2.93
SDF4-202ENST00000360001 GGT6Q6P531 493 aa33.34■■■□□ 2.93
SDF4-202ENST00000360001 EFCAB6Q5THR3 1501 aa33.32■■■□□ 2.93
SDF4-202ENST00000360001 CCDC144AA2RUR9 1427 aa33.31■■■□□ 2.92
SDF4-202ENST00000360001 ABCC3O15438 1527 aa33.28■■■□□ 2.92
SDF4-202ENST00000360001 AGLP35573 1532 aa33.28■■■□□ 2.92
SDF4-202ENST00000360001 PTPRTO14522 1441 aa33.28■■■□□ 2.92
SDF4-202ENST00000360001 SPHKAPQ2M3C7 1700 aa33.27■■■□□ 2.92
SDF4-202ENST00000360001 ZNF316A6NFI3 1004 aaPredicted RBP33.25■■■□□ 2.91
SDF4-202ENST00000360001 SIGLEC1Q9BZZ2 1709 aa33.25■■■□□ 2.91
SDF4-202ENST00000360001 TRPM2O94759 1503 aa33.25■■■□□ 2.91
SDF4-202ENST00000360001 WASHC2CQ9Y4E1 1318 aa33.22■■■□□ 2.91
SDF4-202ENST00000360001 ZC3H13Q5T200 1668 aaKnown RBP33.2■■■□□ 2.91
SDF4-202ENST00000360001 CAMSAP1Q5T5Y3 1602 aa33.19■■■□□ 2.9
SDF4-202ENST00000360001 NPATQ14207 1427 aa33.17■■■□□ 2.9
SDF4-202ENST00000360001 CLTCL1P53675 1640 aa33.14■■■□□ 2.9
SDF4-202ENST00000360001 NBPF8Q3BBV2 869 aa33.1■■■□□ 2.89
SDF4-202ENST00000360001 ARHGAP31Q2M1Z3 1444 aa33.1■■■□□ 2.89
SDF4-202ENST00000360001 SPATA31E1Q6ZUB1 1445 aa33.07■■■□□ 2.89
SDF4-202ENST00000360001 PPP6R1Q9UPN7 881 aa33.07■■■□□ 2.88
SDF4-202ENST00000360001 CFAP65Q6ZU64 1925 aaKnown RBP33.05■■■□□ 2.88
SDF4-202ENST00000360001 UHRF1BP1Q6BDS2 1440 aa33.05■■■□□ 2.88
SDF4-202ENST00000360001 UGGT1Q9NYU2 1555 aa33.05■■■□□ 2.88
SDF4-202ENST00000360001 CNTLNQ9NXG0 1405 aa33.03■■■□□ 2.88
SDF4-202ENST00000360001 RGL3Q3MIN7 710 aa33.03■■■□□ 2.88
SDF4-202ENST00000360001 DCAF11Q8TEB1 546 aa33.02■■■□□ 2.88
SDF4-202ENST00000360001 NOS1P29475 1434 aa33.02■■■□□ 2.88
SDF4-202ENST00000360001 NEURL4Q96JN8 1562 aa33■■■□□ 2.87
SDF4-202ENST00000360001 CLTCQ00610 1675 aaKnown RBP32.98■■■□□ 2.87
SDF4-202ENST00000360001 MLECQ14165 292 aa32.98■■■□□ 2.87
SDF4-202ENST00000360001 KDM2AQ9Y2K7 1162 aa32.97■■■□□ 2.87
SDF4-202ENST00000360001 KIF1BO60333 1816 aa32.96■■■□□ 2.87
SDF4-202ENST00000360001 SYNMO15061 1565 aa32.96■■■□□ 2.87
SDF4-202ENST00000360001 ZNF326Q5BKZ1 582 aaKnown RBP32.94■■■□□ 2.86
SDF4-202ENST00000360001 PREX1Q8TCU6 1659 aa32.93■■■□□ 2.86
SDF4-202ENST00000360001 ARID4BQ4LE39 1312 aaPredicted RBP32.92■■■□□ 2.86
SDF4-202ENST00000360001 PIK3C2BO00750 1634 aa32.91■■■□□ 2.86
SDF4-202ENST00000360001 PRAG1Q86YV5 1406 aa32.91■■■□□ 2.86
SDF4-202ENST00000360001 RALGAPBQ86X10 1494 aa32.9■■■□□ 2.86
SDF4-202ENST00000360001 MROH2AA6NES4 1674 aa32.89■■■□□ 2.86
SDF4-202ENST00000360001 ADGRB3O60242 1522 aa32.88■■■□□ 2.85
SDF4-202ENST00000360001 ERVK-7P63135 1459 aa32.85■■■□□ 2.85
SDF4-202ENST00000360001 HIRIP3Q9BW71 556 aaPredicted RBP32.85■■■□□ 2.85
SDF4-202ENST00000360001 DIEXFQ68CQ4 756 aaKnown RBP32.83■■■□□ 2.85
SDF4-202ENST00000360001 TRPM1Q7Z4N2 1603 aa32.83■■■□□ 2.85
SDF4-202ENST00000360001 FBXO31Q5XUX0 539 aaPredicted RBP32.82■■■□□ 2.84
SDF4-202ENST00000360001 EIF4G2P78344 907 aaKnown RBP eCLIP32.81■■■□□ 2.842e-8■■■■■ 34.8
SDF4-202ENST00000360001 HSPA5P11021 654 aaKnown RBP32.81■■■□□ 2.84
SDF4-202ENST00000360001 STAC3Q96MF2 364 aa32.8■■■□□ 2.84
SDF4-202ENST00000360001 IFT172Q9UG01 1749 aa32.8■■■□□ 2.84
SDF4-202ENST00000360001 ESF1Q9H501 851 aaKnown RBP32.79■■■□□ 2.84
SDF4-202ENST00000360001 SLC52A1Q9NWF4 448 aa32.79■■■□□ 2.84
SDF4-202ENST00000360001 MADDQ8WXG6 1647 aa32.79■■■□□ 2.84
SDF4-202ENST00000360001 SPATA31D1Q6ZQQ2 1576 aa32.78■■■□□ 2.84
SDF4-202ENST00000360001 ZMYM3Q14202 1370 aa32.77■■■□□ 2.84
SDF4-202ENST00000360001 IDI1Q13907 227 aa32.76■■■□□ 2.84
SDF4-202ENST00000360001 CHGAP10645 457 aaKnown RBP32.76■■■□□ 2.83
SDF4-202ENST00000360001 MYOM2P54296 1465 aa32.75■■■□□ 2.83
SDF4-202ENST00000360001 ROCK2O75116 1388 aaKnown RBP32.72■■■□□ 2.83
SDF4-202ENST00000360001 CARD11Q9BXL7 1154 aa32.7■■■□□ 2.83
SDF4-202ENST00000360001 PPLO60437 1756 aa32.7■■■□□ 2.83
SDF4-202ENST00000360001 GPRASP1Q5JY77 1395 aa32.7■■■□□ 2.82
SDF4-202ENST00000360001 USP47Q96K76 1375 aa32.7■■■□□ 2.82
SDF4-202ENST00000360001 TMEM131LA2VDJ0 1609 aa32.69■■■□□ 2.82
SDF4-202ENST00000360001 NBPF1Q3BBV0 1214 aa32.67■■■□□ 2.82
SDF4-202ENST00000360001 LAMC1P11047 1609 aa32.67■■■□□ 2.82
SDF4-202ENST00000360001 RPGRIP1LQ68CZ1 1315 aa32.67■■■□□ 2.82
SDF4-202ENST00000360001 NRXN1Q9ULB1 1477 aa32.66■■■□□ 2.82
SDF4-202ENST00000360001 FER1L4A9Z1Z3 1794 aa32.66■■■□□ 2.82
Retrieved 100 of 20,778 RNA–protein pairs in 23.3 ms