RNA–Protein interactions for RNA: ENST00000359902.2

CCDC88B-203, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 1 (best) BASIC

Gene CCDC88B, Length 2,326 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-203ENST00000359902 DHX29Q7Z478 1369 aaKnown RBP28.69■■■□□ 2.18
CCDC88B-203ENST00000359902 MRS2Q9HD23 443 aa28.69■■■□□ 2.18
CCDC88B-203ENST00000359902 GRWD1Q9BQ67 446 aaKnown RBP eCLIP28.69■■■□□ 2.18
CCDC88B-203ENST00000359902 DUOX2Q9NRD8 1548 aa28.68■■■□□ 2.18
CCDC88B-203ENST00000359902 CCDC144AA2RUR9 1427 aa28.67■■■□□ 2.18
CCDC88B-203ENST00000359902 PLA2R1Q13018 1463 aa28.67■■■□□ 2.18
CCDC88B-203ENST00000359902 IQGAP3Q86VI3 1631 aa28.66■■■□□ 2.18
CCDC88B-203ENST00000359902 POLR3GLQ9BT43 218 aa28.64■■■□□ 2.17
CCDC88B-203ENST00000359902 FAM9BQ8IZU0 186 aa28.63■■■□□ 2.17
CCDC88B-203ENST00000359902 ABCC1P33527 1531 aa28.63■■■□□ 2.17
CCDC88B-203ENST00000359902 ERBINQ96RT1 1412 aa28.63■■■□□ 2.17
CCDC88B-203ENST00000359902 ST20-MTHFSA0A0A6YYL1 179 aa28.61■■■□□ 2.17
CCDC88B-203ENST00000359902 TRAPPC8Q9Y2L5 1435 aa28.61■■■□□ 2.17
CCDC88B-203ENST00000359902 MAGI2Q86UL8 1455 aa28.6■■■□□ 2.17
CCDC88B-203ENST00000359902 ROCK2O75116 1388 aaKnown RBP28.6■■■□□ 2.17
CCDC88B-203ENST00000359902 PRAG1Q86YV5 1406 aa28.59■■■□□ 2.17
CCDC88B-203ENST00000359902 RGL3Q3MIN7 710 aa28.57■■■□□ 2.16
CCDC88B-203ENST00000359902 ATP10AO60312 1499 aa28.55■■■□□ 2.16
CCDC88B-203ENST00000359902 TRPM1Q7Z4N2 1603 aa28.54■■■□□ 2.16
CCDC88B-203ENST00000359902 ARAP3Q8WWN8 1544 aa28.54■■■□□ 2.16
CCDC88B-203ENST00000359902 A2MP01023 1474 aa28.54■■■□□ 2.16
CCDC88B-203ENST00000359902 TSHZ2Q9NRE2 1034 aa28.53■■■□□ 2.16
CCDC88B-203ENST00000359902 ZBED9Q6R2W3 1325 aa28.51■■■□□ 2.15
CCDC88B-203ENST00000359902 SPAG9O60271 1321 aaKnown RBP28.5■■■□□ 2.15
CCDC88B-203ENST00000359902 AFAP1Q8N556 730 aa28.49■■■□□ 2.15
CCDC88B-203ENST00000359902 RTEL1-TNFRSF6BF6WH68 1400 aa28.49■■■□□ 2.15
CCDC88B-203ENST00000359902 NBPF1Q3BBV0 1214 aa28.48■■■□□ 2.15
CCDC88B-203ENST00000359902 WDR7Q9Y4E6 1490 aa28.48■■■□□ 2.15
CCDC88B-203ENST00000359902 CNGB1Q14028 1251 aaPredicted RBP28.47■■■□□ 2.15
CCDC88B-203ENST00000359902 GPRASP1Q5JY77 1395 aa28.47■■■□□ 2.15
CCDC88B-203ENST00000359902 ZFYVE16Q7Z3T8 1539 aa28.44■■■□□ 2.14
CCDC88B-203ENST00000359902 LAMC1P11047 1609 aa28.4■■■□□ 2.14
CCDC88B-203ENST00000359902 E9PCH4 1651 aa28.39■■■□□ 2.14
CCDC88B-203ENST00000359902 ABCA9Q8IUA7 1624 aa28.39■■■□□ 2.13
CCDC88B-203ENST00000359902 FANCAO15360 1455 aa28.38■■■□□ 2.13
CCDC88B-203ENST00000359902 PRDM15P57071 1507 aaPredicted RBP28.37■■■□□ 2.13
CCDC88B-203ENST00000359902 EIF2AK4Q9P2K8 1649 aaKnown RBP28.37■■■□□ 2.13
CCDC88B-203ENST00000359902 IRX6P78412 446 aaPredicted RBP28.35■■■□□ 2.13
CCDC88B-203ENST00000359902 PNISRQ8TF01 805 aaKnown RBP28.35■■■□□ 2.13
CCDC88B-203ENST00000359902 KTN1Q86UP2 1357 aaKnown RBP28.34■■■□□ 2.13
CCDC88B-203ENST00000359902 DEPDC5O75140 1603 aa28.32■■■□□ 2.12
CCDC88B-203ENST00000359902 TMC1Q8TDI8 760 aa28.32■■■□□ 2.12
CCDC88B-203ENST00000359902 TESK2Q96S53 571 aa28.32■■■□□ 2.12
CCDC88B-203ENST00000359902 RALBP1Q15311 655 aa28.32■■■□□ 2.12
CCDC88B-203ENST00000359902 ATP7AQ04656 1500 aa28.32■■■□□ 2.12
CCDC88B-203ENST00000359902 INO80Q9ULG1 1556 aaPredicted RBP28.31■■■□□ 2.12
CCDC88B-203ENST00000359902 ASXL2Q76L83 1435 aa28.3■■■□□ 2.12
CCDC88B-203ENST00000359902 ERICH6BQ5W0A0 696 aa28.3■■■□□ 2.12
CCDC88B-203ENST00000359902 PTPRTO14522 1441 aa28.29■■■□□ 2.12
CCDC88B-203ENST00000359902 COL17A1Q9UMD9 1497 aaPredicted RBP28.29■■■□□ 2.12
CCDC88B-203ENST00000359902 MYBBP1AQ9BQG0 1328 aaKnown RBP28.29■■■□□ 2.12
CCDC88B-203ENST00000359902 TRPM2O94759 1503 aa28.29■■■□□ 2.12
CCDC88B-203ENST00000359902 SCAPERQ9BY12 1400 aa28.29■■■□□ 2.12
CCDC88B-203ENST00000359902 ADGRL1O94910 1474 aa28.28■■■□□ 2.12
CCDC88B-203ENST00000359902 BRD4O60885 1362 aaPredicted RBP28.27■■■□□ 2.12
CCDC88B-203ENST00000359902 DISP3Q9P2K9 1392 aa28.26■■■□□ 2.11
CCDC88B-203ENST00000359902 PER1O15534 1290 aaPredicted RBP28.25■■■□□ 2.11
CCDC88B-203ENST00000359902 TET3O43151 1660 aa28.24■■■□□ 2.11
CCDC88B-203ENST00000359902 RNF17Q9BXT8 1623 aaKnown RBP28.24■■■□□ 2.11
CCDC88B-203ENST00000359902 VWDEQ8N2E2 1590 aa28.24■■■□□ 2.11
CCDC88B-203ENST00000359902 SPHKAPQ2M3C7 1700 aa28.24■■■□□ 2.11
CCDC88B-203ENST00000359902 SMG6Q86US8 1419 aaKnown RBP28.23■■■□□ 2.11
CCDC88B-203ENST00000359902 KANK1Q14678 1352 aa28.23■■■□□ 2.11
CCDC88B-203ENST00000359902 LRPPRCP42704 1394 aaKnown RBP28.22■■■□□ 2.11
CCDC88B-203ENST00000359902 KIF3BO15066 747 aa28.22■■■□□ 2.11
CCDC88B-203ENST00000359902 CEP152O94986 1710 aa28.21■■■□□ 2.11
CCDC88B-203ENST00000359902 MADDQ8WXG6 1647 aa28.21■■■□□ 2.11
CCDC88B-203ENST00000359902 PARD3Q8TEW0 1356 aa28.21■■■□□ 2.11
CCDC88B-203ENST00000359902 CLTCL1P53675 1640 aa28.2■■■□□ 2.11
CCDC88B-203ENST00000359902 MYT1LQ9UL68 1186 aa28.2■■■□□ 2.11
CCDC88B-203ENST00000359902 TMF1P82094 1093 aa28.19■■■□□ 2.1
CCDC88B-203ENST00000359902 STAC3Q96MF2 364 aa28.19■■■□□ 2.1
CCDC88B-203ENST00000359902 PPP4R2Q9NY27 417 aa28.17■■■□□ 2.1
CCDC88B-203ENST00000359902 OSCARQ8IYS5 282 aa28.17■■■□□ 2.1
CCDC88B-203ENST00000359902 NUDCQ9Y266 331 aa28.16■■■□□ 2.1
CCDC88B-203ENST00000359902 WASHC2CQ9Y4E1 1318 aa28.16■■■□□ 2.1
CCDC88B-203ENST00000359902 NLRP13Q86W25 1043 aa28.15■■■□□ 2.1
CCDC88B-203ENST00000359902 MROH1Q8NDA8 1641 aa28.15■■■□□ 2.1
CCDC88B-203ENST00000359902 PANK3Q9H999 370 aa28.14■■■□□ 2.09
CCDC88B-203ENST00000359902 NPM1P06748 294 aaKnown RBP eCLIP28.13■■■□□ 2.09
CCDC88B-203ENST00000359902 KIDINS220Q9ULH0 1771 aa28.12■■■□□ 2.09
CCDC88B-203ENST00000359902 IQGAP1P46940 1657 aa28.11■■■□□ 2.09
CCDC88B-203ENST00000359902 SENP3-EIF4A1A0A087X0R7 540 aa28.09■■■□□ 2.09
CCDC88B-203ENST00000359902 ZNF518AQ6AHZ1 1483 aa28.08■■■□□ 2.09
CCDC88B-203ENST00000359902 NEURL4Q96JN8 1562 aa28.07■■■□□ 2.08
CCDC88B-203ENST00000359902 SCAF11Q99590 1463 aaKnown RBP28.06■■■□□ 2.08
CCDC88B-203ENST00000359902 CC2D1BQ5T0F9 858 aaKnown RBP28.06■■■□□ 2.08
CCDC88B-203ENST00000359902 RNF123Q5XPI4 1314 aa28.06■■■□□ 2.08
CCDC88B-203ENST00000359902 RBM19Q9Y4C8 960 aaKnown RBP28.06■■■□□ 2.08
CCDC88B-203ENST00000359902 EFCAB6Q5THR3 1501 aa28.03■■■□□ 2.08
CCDC88B-203ENST00000359902 CD109Q6YHK3 1445 aa28.03■■■□□ 2.08
CCDC88B-203ENST00000359902 UGGT1Q9NYU2 1555 aa28.02■■■□□ 2.08
CCDC88B-203ENST00000359902 LMTK2Q8IWU2 1503 aa28■■■□□ 2.07
CCDC88B-203ENST00000359902 KIAA1210Q9ULL0 1709 aa27.99■■■□□ 2.07
CCDC88B-203ENST00000359902 PPRC1Q5VV67 1664 aaKnown RBP27.98■■■□□ 2.07
CCDC88B-203ENST00000359902 B4GALNT3Q6L9W6 998 aa27.97■■■□□ 2.07
CCDC88B-203ENST00000359902 POGZQ7Z3K3 1410 aa27.97■■■□□ 2.07
CCDC88B-203ENST00000359902 CFAP74Q9C0B2 1584 aa27.97■■■□□ 2.07
CCDC88B-203ENST00000359902 CDCA8Q53HL2 280 aa27.97■■■□□ 2.07
CCDC88B-203ENST00000359902 MYOM2P54296 1465 aa27.96■■■□□ 2.07
Retrieved 100 of 20,778 RNA–protein pairs in 37.6 ms