RNA–Protein interactions for RNA: ENST00000357008.6

CHD4-201, Transcript of chromodomain helicase DNA binding protein 4, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CHD4, Length 6,496 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD4-201ENST00000357008 DDX49Q9Y6V7 483 aaKnown RBP18.43■□□□□ 0.54
CHD4-201ENST00000357008 EXOC6Q8TAG9 804 aa18.43■□□□□ 0.54
CHD4-201ENST00000357008 ERCC6Q03468 1493 aa18.42■□□□□ 0.54
CHD4-201ENST00000357008 NOL8Q76FK4 1167 aaKnown RBP18.42■□□□□ 0.54
CHD4-201ENST00000357008 NOC3LQ8WTT2 800 aaKnown RBP18.42■□□□□ 0.54
CHD4-201ENST00000357008 SLC4A3P48751 1232 aa18.41■□□□□ 0.54
CHD4-201ENST00000357008 KIF16BQ96L93 1317 aa18.41■□□□□ 0.54
CHD4-201ENST00000357008 CLSTN1O94985 981 aa18.41■□□□□ 0.54
CHD4-201ENST00000357008 EFCAB2Q5VUJ9 269 aa18.4■□□□□ 0.54
CHD4-201ENST00000357008 SLC4A10Q6U841 1118 aa18.4■□□□□ 0.54
CHD4-201ENST00000357008 ISY1Q9ULR0 285 aaKnown RBP18.4■□□□□ 0.54
CHD4-201ENST00000357008 KIF3AQ9Y496 699 aa18.4■□□□□ 0.54
CHD4-201ENST00000357008 CGNL1Q0VF96 1302 aa18.39■□□□□ 0.54
CHD4-201ENST00000357008 MLECQ14165 292 aa18.39■□□□□ 0.53
CHD4-201ENST00000357008 GORABQ5T7V8 394 aa18.39■□□□□ 0.53
CHD4-201ENST00000357008 E9PSI1 815 aa18.38■□□□□ 0.53
CHD4-201ENST00000357008 CRBNQ96SW2 442 aa18.38■□□□□ 0.53
CHD4-201ENST00000357008 PLIN1O60240 522 aa18.37■□□□□ 0.53
CHD4-201ENST00000357008 ST20-MTHFSA0A0A6YYL1 179 aa18.37■□□□□ 0.53
CHD4-201ENST00000357008 ATP6V1DQ9Y5K8 247 aa18.37■□□□□ 0.53
CHD4-201ENST00000357008 MROH2BQ7Z745 1585 aa18.36■□□□□ 0.53
CHD4-201ENST00000357008 RSPH4AQ5TD94 716 aa18.36■□□□□ 0.53
CHD4-201ENST00000357008 PANK3Q9H999 370 aa18.36■□□□□ 0.53
CHD4-201ENST00000357008 FOXD4L5Q5VV16 416 aaPredicted RBP18.35■□□□□ 0.53
CHD4-201ENST00000357008 ZKSCAN2Q63HK3 967 aa18.35■□□□□ 0.53
CHD4-201ENST00000357008 FOXD4L4Q8WXT5 416 aaPredicted RBP18.35■□□□□ 0.53
CHD4-201ENST00000357008 PAK3O75914 559 aaPredicted RBP18.35■□□□□ 0.53
CHD4-201ENST00000357008 ANKRD45Q5TZF3 282 aa18.33■□□□□ 0.53
CHD4-201ENST00000357008 TPM3P06753 285 aa18.33■□□□□ 0.52
CHD4-201ENST00000357008 SF3A1Q15459 793 aaKnown RBP18.33■□□□□ 0.52
CHD4-201ENST00000357008 RRP7AQ9Y3A4 280 aaKnown RBP18.32■□□□□ 0.52
CHD4-201ENST00000357008 VSIG10Q8N0Z9 540 aa18.32■□□□□ 0.52
CHD4-201ENST00000357008 CHMP3Q9Y3E7 222 aa18.31■□□□□ 0.52
CHD4-201ENST00000357008 KIF3BO15066 747 aa18.3■□□□□ 0.52
CHD4-201ENST00000357008 CCDC18Q5T9S5 1454 aa18.3■□□□□ 0.52
CHD4-201ENST00000357008 COG6Q9Y2V7 657 aa18.3■□□□□ 0.52
CHD4-201ENST00000357008 ZNF330Q9Y3S2 320 aaPredicted RBP18.3■□□□□ 0.52
CHD4-201ENST00000357008 CSB-PGBD3P0DP91 1061 aa18.3■□□□□ 0.52
CHD4-201ENST00000357008 TAF7LQ5H9L4 462 aa18.3■□□□□ 0.52
CHD4-201ENST00000357008 CHMP4CQ96CF2 233 aa18.3■□□□□ 0.52
CHD4-201ENST00000357008 BCL2L13Q9BXK5 485 aa18.3■□□□□ 0.52
CHD4-201ENST00000357008 CHMP5Q9NZZ3 219 aa18.3■□□□□ 0.52
CHD4-201ENST00000357008 GOLGA6L19H0YKK7 550 aa18.3■□□□□ 0.52
CHD4-201ENST00000357008 HNRNPMP52272 730 aaKnown RBP eCLIP18.29■□□□□ 0.523e-7■■■■■ 27.3
CHD4-201ENST00000357008 FHOD3Q2V2M9 1422 aa18.29■□□□□ 0.52
CHD4-201ENST00000357008 RASSF8Q8NHQ8 419 aa18.29■□□□□ 0.52
CHD4-201ENST00000357008 RAPGEF2Q9Y4G8 1499 aa18.29■□□□□ 0.52
CHD4-201ENST00000357008 NGEFQ8N5V2 710 aa18.29■□□□□ 0.52
CHD4-201ENST00000357008 H3BQV1 296 aa18.28■□□□□ 0.52
CHD4-201ENST00000357008 IFFO2Q5TF58 517 aa18.28■□□□□ 0.52
CHD4-201ENST00000357008 RILPL2Q969X0 211 aa18.27■□□□□ 0.52
CHD4-201ENST00000357008 A0A0U1RQG5 324 aaPredicted RBP18.27■□□□□ 0.52
CHD4-201ENST00000357008 BECN2A8MW95 431 aa18.27■□□□□ 0.52
CHD4-201ENST00000357008 USP47Q96K76 1375 aa18.27■□□□□ 0.51
CHD4-201ENST00000357008 CCDC144AA2RUR9 1427 aa18.26■□□□□ 0.51
CHD4-201ENST00000357008 REC8O95072 547 aa18.26■□□□□ 0.51
CHD4-201ENST00000357008 TDRD9Q8NDG6 1382 aaKnown RBP18.26■□□□□ 0.51
CHD4-201ENST00000357008 DDX19BQ9UMR2 479 aa18.25■□□□□ 0.51
CHD4-201ENST00000357008 CREBRFQ8IUR6 639 aa18.25■□□□□ 0.51
CHD4-201ENST00000357008 FAM184AQ8NB25 1140 aa18.25■□□□□ 0.51
CHD4-201ENST00000357008 APAF1O14727 1248 aa18.23■□□□□ 0.51
CHD4-201ENST00000357008 AMPHP49418 695 aa18.23■□□□□ 0.51
CHD4-201ENST00000357008 TRAK1Q9UPV9 953 aa18.23■□□□□ 0.51
CHD4-201ENST00000357008 SUGP2Q8IX01 1082 aaKnown RBP eCLIP18.22■□□□□ 0.51
CHD4-201ENST00000357008 ELL2O00472 640 aaPredicted RBP18.22■□□□□ 0.51
CHD4-201ENST00000357008 SMARCA2P51531 1590 aa18.22■□□□□ 0.51
CHD4-201ENST00000357008 GPS2Q13227 327 aa18.22■□□□□ 0.51
CHD4-201ENST00000357008 FOXD4L6Q3SYB3 417 aaPredicted RBP18.21■□□□□ 0.51
CHD4-201ENST00000357008 FOXD4L3Q6VB84 417 aaPredicted RBP18.21■□□□□ 0.51
CHD4-201ENST00000357008 PDZRN4Q6ZMN7 1036 aaPredicted RBP18.21■□□□□ 0.51
CHD4-201ENST00000357008 TSR1Q2NL82 804 aaKnown RBP18.2■□□□□ 0.5
CHD4-201ENST00000357008 TOMM22Q9NS69 142 aa18.2■□□□□ 0.5
CHD4-201ENST00000357008 NGDNQ8NEJ9 315 aaKnown RBP18.2■□□□□ 0.5
CHD4-201ENST00000357008 DZIP1LQ8IYY4 767 aaKnown RBP18.19■□□□□ 0.5
CHD4-201ENST00000357008 FAM43AQ8N2R8 423 aa18.19■□□□□ 0.5
CHD4-201ENST00000357008 RUFY2Q8WXA3 655 aa18.19■□□□□ 0.5
CHD4-201ENST00000357008 TPD52L1Q16890 204 aaPredicted RBP18.19■□□□□ 0.5
CHD4-201ENST00000357008 UACAQ9BZF9 1416 aa18.19■□□□□ 0.5
CHD4-201ENST00000357008 DIAPH3Q9NSV4 1193 aa18.18■□□□□ 0.5
CHD4-201ENST00000357008 TPM1P09493 284 aa18.18■□□□□ 0.5
CHD4-201ENST00000357008 NUCB2P80303 420 aa18.18■□□□□ 0.5
CHD4-201ENST00000357008 SETQ01105 290 aaPredicted RBP18.18■□□□□ 0.5
CHD4-201ENST00000357008 CCAR2Q8N163 923 aaKnown RBP18.18■□□□□ 0.5
CHD4-201ENST00000357008 TOP2AP11388 1531 aaKnown RBP18.18■□□□□ 0.5
CHD4-201ENST00000357008 ZNF771Q7L3S4 317 aaPredicted RBP18.18■□□□□ 0.5
CHD4-201ENST00000357008 PDS5BQ9NTI5 1447 aa18.18■□□□□ 0.5
CHD4-201ENST00000357008 WASHC2CQ9Y4E1 1318 aa18.18■□□□□ 0.5
CHD4-201ENST00000357008 FAM13BQ9NYF5 915 aa18.17■□□□□ 0.5
CHD4-201ENST00000357008 NFKBIBQ15653 356 aa18.17■□□□□ 0.5
CHD4-201ENST00000357008 ZKSCAN1P17029 563 aaPredicted RBP18.17■□□□□ 0.5
CHD4-201ENST00000357008 AAMPQ13685 434 aa18.17■□□□□ 0.5
CHD4-201ENST00000357008 NCBP3Q53F19 620 aaKnown RBP18.16■□□□□ 0.5
CHD4-201ENST00000357008 NUTM2DQ5VT03 806 aaPredicted RBP18.16■□□□□ 0.5
CHD4-201ENST00000357008 API5Q9BZZ5 524 aaKnown RBP18.16■□□□□ 0.5
CHD4-201ENST00000357008 ZNF592Q92610 1267 aa18.16■□□□□ 0.5
CHD4-201ENST00000357008 CEP89Q96ST8 783 aa18.16■□□□□ 0.5
CHD4-201ENST00000357008 PES1O00541 588 aaKnown RBP18.15■□□□□ 0.5
CHD4-201ENST00000357008 EVC2Q86UK5 1308 aa18.15■□□□□ 0.5
CHD4-201ENST00000357008 CCDC70Q6NSX1 233 aa18.14■□□□□ 0.49
CHD4-201ENST00000357008 MCTP1Q6DN14 999 aa18.13■□□□□ 0.49
Retrieved 100 of 20,778 RNA–protein pairs in 8.7 ms