RNA–Protein interactions for RNA: ENST00000354901.8

SMG6-202, Transcript of SMG6, nonsense mediated mRNA decay factor, humanhuman

TSL 1 (best) BASIC

Gene SMG6, Length 3,473 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMG6-202ENST00000354901 ARHGEF5Q12774 1597 aa12.61□□□□□ -0.39
SMG6-202ENST00000354901 HNRNPMP52272 730 aaKnown RBP eCLIP12.61□□□□□ -0.392e-14■■■■■ 29.9
SMG6-202ENST00000354901 NUP155O75694 1391 aa12.6□□□□□ -0.39
SMG6-202ENST00000354901 USP47Q96K76 1375 aa12.6□□□□□ -0.39
SMG6-202ENST00000354901 PZPP20742 1482 aa12.59□□□□□ -0.39
SMG6-202ENST00000354901 TSPY4P0CV99 314 aa12.59□□□□□ -0.39
SMG6-202ENST00000354901 TSPY10P0CW01 314 aa12.59□□□□□ -0.39
SMG6-202ENST00000354901 ZCCHC11Q5TAX3 1644 aaKnown RBP12.59□□□□□ -0.39
SMG6-202ENST00000354901 CARD11Q9BXL7 1154 aa12.59□□□□□ -0.39
SMG6-202ENST00000354901 IPO9Q96P70 1041 aaKnown RBP12.58□□□□□ -0.39
SMG6-202ENST00000354901 ANKRD30AQ9BXX3 1397 aa12.58□□□□□ -0.39
SMG6-202ENST00000354901 DCAF11Q8TEB1 546 aa12.57□□□□□ -0.4
SMG6-202ENST00000354901 VSIG10Q8N0Z9 540 aa12.57□□□□□ -0.4
SMG6-202ENST00000354901 ANKRD50Q9ULJ7 1429 aa12.57□□□□□ -0.4
SMG6-202ENST00000354901 PLEKHH2Q8IVE3 1493 aa12.57□□□□□ -0.4
SMG6-202ENST00000354901 RSPH4AQ5TD94 716 aa12.57□□□□□ -0.4
SMG6-202ENST00000354901 MYO5CQ9NQX4 1742 aa12.56□□□□□ -0.4
SMG6-202ENST00000354901 SPATA31E1Q6ZUB1 1445 aa12.56□□□□□ -0.4
SMG6-202ENST00000354901 KIAA1107Q9UPP5 1409 aa12.56□□□□□ -0.4
SMG6-202ENST00000354901 RGL3Q3MIN7 710 aa12.56□□□□□ -0.4
SMG6-202ENST00000354901 GRWD1Q9BQ67 446 aaKnown RBP eCLIP12.56□□□□□ -0.46e-8■■■■□ 25.6
SMG6-202ENST00000354901 ZBED9Q6R2W3 1325 aa12.56□□□□□ -0.4
SMG6-202ENST00000354901 ARAP3Q8WWN8 1544 aa12.56□□□□□ -0.4
SMG6-202ENST00000354901 CDC42BPBQ9Y5S2 1711 aa12.55□□□□□ -0.4
SMG6-202ENST00000354901 ST20-MTHFSA0A0A6YYL1 179 aa12.54□□□□□ -0.4
SMG6-202ENST00000354901 TMC1Q8TDI8 760 aa12.54□□□□□ -0.4
SMG6-202ENST00000354901 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP12.54□□□□□ -0.4
SMG6-202ENST00000354901 MAST1Q9Y2H9 1570 aa12.53□□□□□ -0.4
SMG6-202ENST00000354901 OSCARQ8IYS5 282 aa12.53□□□□□ -0.4
SMG6-202ENST00000354901 TTC37Q6PGP7 1564 aa12.52□□□□□ -0.41
SMG6-202ENST00000354901 SAMD9LQ8IVG5 1584 aa12.51□□□□□ -0.41
SMG6-202ENST00000354901 C9orf84Q5VXU9 1444 aa12.51□□□□□ -0.41
SMG6-202ENST00000354901 CCDC141Q6ZP82 1450 aa12.51□□□□□ -0.41
SMG6-202ENST00000354901 GLIPR1L2Q4G1C9 344 aa12.5□□□□□ -0.41
SMG6-202ENST00000354901 ARXQ96QS3 562 aa12.5□□□□□ -0.41
SMG6-202ENST00000354901 DHX29Q7Z478 1369 aaKnown RBP12.5□□□□□ -0.41
SMG6-202ENST00000354901 KIF15Q9NS87 1388 aa12.5□□□□□ -0.41
SMG6-202ENST00000354901 MBD5Q9P267 1494 aa12.49□□□□□ -0.41
SMG6-202ENST00000354901 ARHGAP5Q13017 1502 aa12.49□□□□□ -0.41
SMG6-202ENST00000354901 PLCH2O75038 1416 aa12.48□□□□□ -0.41
SMG6-202ENST00000354901 BCORL1Q5H9F3 1711 aa12.48□□□□□ -0.41
SMG6-202ENST00000354901 WDR7Q9Y4E6 1490 aa12.47□□□□□ -0.41
SMG6-202ENST00000354901 KDM5DQ9BY66 1539 aa12.47□□□□□ -0.41
SMG6-202ENST00000354901 DAXXQ9UER7 740 aaPredicted RBP12.46□□□□□ -0.41
SMG6-202ENST00000354901 PLXNC1O60486 1568 aa12.46□□□□□ -0.41
SMG6-202ENST00000354901 ROCK2O75116 1388 aaKnown RBP12.46□□□□□ -0.41
SMG6-202ENST00000354901 ABCA9Q8IUA7 1624 aa12.46□□□□□ -0.42
SMG6-202ENST00000354901 NBPF1Q3BBV0 1214 aa12.46□□□□□ -0.42
SMG6-202ENST00000354901 NUDCQ9Y266 331 aa12.46□□□□□ -0.42
SMG6-202ENST00000354901 ZMYND15Q9H091 742 aa12.45□□□□□ -0.42
SMG6-202ENST00000354901 A0A0U1RQG5 324 aaPredicted RBP12.45□□□□□ -0.42
SMG6-202ENST00000354901 PNISRQ8TF01 805 aaKnown RBP12.45□□□□□ -0.42
SMG6-202ENST00000354901 ARID4BQ4LE39 1312 aaPredicted RBP12.44□□□□□ -0.42
SMG6-202ENST00000354901 SLC4A3P48751 1232 aa12.43□□□□□ -0.42
SMG6-202ENST00000354901 ABCC1P33527 1531 aa12.43□□□□□ -0.42
SMG6-202ENST00000354901 SYCP2Q9BX26 1530 aa12.43□□□□□ -0.42
SMG6-202ENST00000354901 CC2D1BQ5T0F9 858 aaKnown RBP12.42□□□□□ -0.42
SMG6-202ENST00000354901 EFCAB2Q5VUJ9 269 aa12.42□□□□□ -0.42
SMG6-202ENST00000354901 KDM5CP41229 1560 aa12.41□□□□□ -0.42
SMG6-202ENST00000354901 CFAP74Q9C0B2 1584 aa12.4□□□□□ -0.42
SMG6-202ENST00000354901 FRAT1Q92837 279 aaPredicted RBP12.4□□□□□ -0.42
SMG6-202ENST00000354901 GSE1Q14687 1217 aa12.4□□□□□ -0.42
SMG6-202ENST00000354901 RALGAPBQ86X10 1494 aa12.39□□□□□ -0.43
SMG6-202ENST00000354901 RTEL1-TNFRSF6BF6WH68 1400 aa12.39□□□□□ -0.43
SMG6-202ENST00000354901 SMG6Q86US8 1419 aaKnown RBP12.39□□□□□ -0.43
SMG6-202ENST00000354901 DUOX2Q9NRD8 1548 aa12.39□□□□□ -0.43
SMG6-202ENST00000354901 CCDC144AA2RUR9 1427 aa12.39□□□□□ -0.43
SMG6-202ENST00000354901 UNC13BO14795 1591 aa12.39□□□□□ -0.43
SMG6-202ENST00000354901 MYBBP1AQ9BQG0 1328 aaKnown RBP12.38□□□□□ -0.43
SMG6-202ENST00000354901 ASXL2Q76L83 1435 aa12.38□□□□□ -0.43
SMG6-202ENST00000354901 NPM1P06748 294 aaKnown RBP eCLIP12.38□□□□□ -0.43
SMG6-202ENST00000354901 POLR1AO95602 1720 aaPredicted RBP12.38□□□□□ -0.43
SMG6-202ENST00000354901 NAP1L5Q96NT1 182 aaPredicted RBP12.37□□□□□ -0.43
SMG6-202ENST00000354901 RSPH6AQ9H0K4 717 aa12.37□□□□□ -0.43
SMG6-202ENST00000354901 ERBINQ96RT1 1412 aa12.37□□□□□ -0.43
SMG6-202ENST00000354901 UHRF1BP1Q6BDS2 1440 aa12.37□□□□□ -0.43
SMG6-202ENST00000354901 RALBP1Q15311 655 aa12.36□□□□□ -0.43
SMG6-202ENST00000354901 PPM1GO15355 546 aaPredicted RBP12.35□□□□□ -0.43
SMG6-202ENST00000354901 CDCA7LQ96GN5 454 aa12.35□□□□□ -0.43
SMG6-202ENST00000354901 FAM135AQ9P2D6 1515 aa12.34□□□□□ -0.43
SMG6-202ENST00000354901 ARHGEF12Q9NZN5 1544 aa12.34□□□□□ -0.43
SMG6-202ENST00000354901 KTN1Q86UP2 1357 aaKnown RBP12.34□□□□□ -0.43
SMG6-202ENST00000354901 PANK3Q9H999 370 aa12.34□□□□□ -0.43
SMG6-202ENST00000354901 NLRP13Q86W25 1043 aa12.34□□□□□ -0.43
SMG6-202ENST00000354901 EXOC6Q8TAG9 804 aa12.34□□□□□ -0.43
SMG6-202ENST00000354901 FANCAO15360 1455 aa12.33□□□□□ -0.43
SMG6-202ENST00000354901 MAGI2Q86UL8 1455 aa12.33□□□□□ -0.44
SMG6-202ENST00000354901 IQGAP3Q86VI3 1631 aa12.33□□□□□ -0.44
SMG6-202ENST00000354901 BRD4O60885 1362 aaPredicted RBP12.32□□□□□ -0.44
SMG6-202ENST00000354901 SKAP1Q86WV1 359 aa12.32□□□□□ -0.44
SMG6-202ENST00000354901 INO80Q9ULG1 1556 aaPredicted RBP12.32□□□□□ -0.44
SMG6-202ENST00000354901 PLIN1O60240 522 aa12.32□□□□□ -0.44
SMG6-202ENST00000354901 RCAN3Q9UKA8 241 aa12.32□□□□□ -0.44
SMG6-202ENST00000354901 DISP3Q9P2K9 1392 aa12.31□□□□□ -0.44
SMG6-202ENST00000354901 WASHC2CQ9Y4E1 1318 aa12.31□□□□□ -0.44
SMG6-202ENST00000354901 ZFYVE16Q7Z3T8 1539 aa12.31□□□□□ -0.44
SMG6-202ENST00000354901 NFKBIBQ15653 356 aa12.31□□□□□ -0.44
SMG6-202ENST00000354901 PRAG1Q86YV5 1406 aa12.31□□□□□ -0.44
SMG6-202ENST00000354901 EIF2AK4Q9P2K8 1649 aaKnown RBP12.3□□□□□ -0.44
SMG6-202ENST00000354901 USP35Q9P2H5 1018 aa12.3□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 17.8 ms