RNA–Protein interactions for RNA: ENST00000349311.12

UBE2D3-204, Transcript of ubiquitin conjugating enzyme E2 D3, humanhuman

APPRIS ALT1 TSL 2 BASIC

Gene UBE2D3, Length 838 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBE2D3-204ENST00000349311 NPDC1Q9NQX5 325 aaPredicted RBP13.61□□□□□ -0.23
UBE2D3-204ENST00000349311 TSR1Q2NL82 804 aaKnown RBP13.59□□□□□ -0.23
UBE2D3-204ENST00000349311 POTEGQ6S5H5 508 aa13.57□□□□□ -0.24
UBE2D3-204ENST00000349311 RBM33Q96EV2 1170 aaKnown RBP13.57□□□□□ -0.24
UBE2D3-204ENST00000349311 MAP3K7O43318 606 aa13.56□□□□□ -0.24
UBE2D3-204ENST00000349311 CDHR5Q9HBB8 845 aa13.56□□□□□ -0.24
UBE2D3-204ENST00000349311 POTEMA6NI47 508 aa13.55□□□□□ -0.24
UBE2D3-204ENST00000349311 PBX2P40425 430 aa13.55□□□□□ -0.24
UBE2D3-204ENST00000349311 PTGDRQ13258 359 aa13.55□□□□□ -0.24
UBE2D3-204ENST00000349311 ARHGAP33O14559 1287 aa13.53□□□□□ -0.24
UBE2D3-204ENST00000349311 COL9A1P20849 921 aa13.53□□□□□ -0.24
UBE2D3-204ENST00000349311 PTPREP23469 700 aa13.53□□□□□ -0.24
UBE2D3-204ENST00000349311 PPP1R3GB7ZBB8 358 aa13.52□□□□□ -0.25
UBE2D3-204ENST00000349311 ZC3H15Q8WU90 426 aaKnown RBP13.52□□□□□ -0.25
UBE2D3-204ENST00000349311 GPIHBP1Q8IV16 184 aa13.51□□□□□ -0.25
UBE2D3-204ENST00000349311 CERKQ8TCT0 537 aa13.51□□□□□ -0.25
UBE2D3-204ENST00000349311 PSEN2P49810 448 aa13.49□□□□□ -0.25
UBE2D3-204ENST00000349311 SLC4A5Q9BY07 1137 aa13.49□□□□□ -0.25
UBE2D3-204ENST00000349311 NUTM2FA1L443 756 aa13.48□□□□□ -0.25
UBE2D3-204ENST00000349311 FCHSD2O94868 740 aa13.48□□□□□ -0.25
UBE2D3-204ENST00000349311 TTC13Q8NBP0 860 aa13.48□□□□□ -0.25
UBE2D3-204ENST00000349311 KRTAP3-3Q9BYR6 98 aa13.48□□□□□ -0.25
UBE2D3-204ENST00000349311 KRTAP3-2Q9BYR7 98 aa13.48□□□□□ -0.25
UBE2D3-204ENST00000349311 AXIN2Q9Y2T1 843 aa13.48□□□□□ -0.25
UBE2D3-204ENST00000349311 ZMYND10O75800 440 aa13.47□□□□□ -0.25
UBE2D3-204ENST00000349311 KCNK17Q96T54 332 aa13.47□□□□□ -0.25
UBE2D3-204ENST00000349311 RBM27Q9P2N5 1060 aaKnown RBP13.47□□□□□ -0.25
UBE2D3-204ENST00000349311 HIC1Q14526 733 aa13.46□□□□□ -0.25
UBE2D3-204ENST00000349311 DMRTA1Q5VZB9 504 aa13.46□□□□□ -0.25
UBE2D3-204ENST00000349311 ZBED2Q9BTP6 218 aa13.46□□□□□ -0.25
UBE2D3-204ENST00000349311 ONECUT3O60422 494 aaPredicted RBP13.44□□□□□ -0.26
UBE2D3-204ENST00000349311 BARGINQ6ZT62 677 aa13.43□□□□□ -0.26
UBE2D3-204ENST00000349311 GNPATO15228 680 aa13.42□□□□□ -0.26
UBE2D3-204ENST00000349311 PRSS12P56730 875 aa13.42□□□□□ -0.26
UBE2D3-204ENST00000349311 FECHP22830 423 aa13.41□□□□□ -0.26
UBE2D3-204ENST00000349311 CDAN1Q8IWY9 1227 aa13.41□□□□□ -0.26
UBE2D3-204ENST00000349311 FAM198AQ9UFP1 575 aa13.41□□□□□ -0.26
UBE2D3-204ENST00000349311 TK2O00142 265 aa13.4□□□□□ -0.26
UBE2D3-204ENST00000349311 LSM11P83369 360 aaKnown RBP eCLIP13.4□□□□□ -0.26
UBE2D3-204ENST00000349311 CDCA7LQ96GN5 454 aa13.4□□□□□ -0.26
UBE2D3-204ENST00000349311 TSKSQ9UJT2 592 aa13.4□□□□□ -0.26
UBE2D3-204ENST00000349311 KCNH8Q96L42 1107 aa13.39□□□□□ -0.27
UBE2D3-204ENST00000349311 TRIM6-TRIM34B2RNG4 842 aa13.38□□□□□ -0.27
UBE2D3-204ENST00000349311 VPS9D1Q9Y2B5 631 aa13.38□□□□□ -0.27
UBE2D3-204ENST00000349311 PROX2Q3B8N5 592 aa13.37□□□□□ -0.27
UBE2D3-204ENST00000349311 PCDH10Q9P2E7 1040 aa13.37□□□□□ -0.27
UBE2D3-204ENST00000349311 BHMG1C9JSJ3 638 aaPredicted RBP13.36□□□□□ -0.27
UBE2D3-204ENST00000349311 PADI6Q6TGC4 694 aa13.36□□□□□ -0.27
UBE2D3-204ENST00000349311 HRO43593 1189 aa13.35□□□□□ -0.27
UBE2D3-204ENST00000349311 TPRNQ4KMQ1 711 aa13.34□□□□□ -0.27
UBE2D3-204ENST00000349311 MAP2K5Q13163 448 aa13.33□□□□□ -0.28
UBE2D3-204ENST00000349311 RABGEF1Q9UJ41 708 aa13.33□□□□□ -0.28
UBE2D3-204ENST00000349311 MINK1Q8N4C8 1332 aaPredicted RBP13.33□□□□□ -0.28
UBE2D3-204ENST00000349311 C3orf80F5H4A9 247 aa13.32□□□□□ -0.28
UBE2D3-204ENST00000349311 ADGRD1Q6QNK2 874 aa13.32□□□□□ -0.28
UBE2D3-204ENST00000349311 IRF6O14896 467 aa13.3□□□□□ -0.28
UBE2D3-204ENST00000349311 ADGRG1Q9Y653 693 aa13.3□□□□□ -0.28
UBE2D3-204ENST00000349311 PRKCSHP14314 528 aaPredicted RBP13.28□□□□□ -0.28
UBE2D3-204ENST00000349311 EYA1Q99502 592 aa13.28□□□□□ -0.28
UBE2D3-204ENST00000349311 KIAA1468Q9P260 1216 aa13.28□□□□□ -0.28
UBE2D3-204ENST00000349311 PACS2Q86VP3 889 aa13.27□□□□□ -0.29
UBE2D3-204ENST00000349311 TATDN2Q93075 761 aa13.26□□□□□ -0.29
UBE2D3-204ENST00000349311 ANKRD13DQ6ZTN6 518 aa13.25□□□□□ -0.29
UBE2D3-204ENST00000349311 PXYLP1Q8TE99 480 aa13.24□□□□□ -0.29
UBE2D3-204ENST00000349311 SLC24A3Q9HC58 644 aa13.24□□□□□ -0.29
UBE2D3-204ENST00000349311 CCDC102AQ96A19 550 aa13.23□□□□□ -0.29
UBE2D3-204ENST00000349311 NBPF26B4DH59 902 aa13.22□□□□□ -0.29
UBE2D3-204ENST00000349311 OATP04181 439 aa13.22□□□□□ -0.29
UBE2D3-204ENST00000349311 FAM161AQ3B820 660 aa13.22□□□□□ -0.29
UBE2D3-204ENST00000349311 NUDT18Q6ZVK8 323 aa13.22□□□□□ -0.29
UBE2D3-204ENST00000349311 METTL3Q86U44 580 aaKnown RBP13.22□□□□□ -0.29
UBE2D3-204ENST00000349311 LAPTM4BQ86VI4 370 aa13.22□□□□□ -0.29
UBE2D3-204ENST00000349311 AK7Q96M32 723 aa13.21□□□□□ -0.29
UBE2D3-204ENST00000349311 PHOX2BQ99453 314 aa13.21□□□□□ -0.29
UBE2D3-204ENST00000349311 PNMA3Q9UL41 463 aa13.2□□□□□ -0.3
UBE2D3-204ENST00000349311 KRI1Q8N9T8 703 aaKnown RBP13.19□□□□□ -0.3
UBE2D3-204ENST00000349311 RBM46Q8TBY0 533 aaKnown RBP13.18□□□□□ -0.3
UBE2D3-204ENST00000349311 NBPF3Q9H094 633 aa13.18□□□□□ -0.3
UBE2D3-204ENST00000349311 SMAPO00193 183 aa13.17□□□□□ -0.3
UBE2D3-204ENST00000349311 TRIM66O15016 1216 aa13.17□□□□□ -0.3
UBE2D3-204ENST00000349311 FAM98CQ17RN3 349 aaKnown RBP13.16□□□□□ -0.3
UBE2D3-204ENST00000349311 AMHR2Q16671 573 aa13.15□□□□□ -0.3
UBE2D3-204ENST00000349311 TMUB1Q9BVT8 246 aa13.15□□□□□ -0.3
UBE2D3-204ENST00000349311 SEPT9Q9UHD8 586 aaPredicted RBP13.15□□□□□ -0.3
UBE2D3-204ENST00000349311 ZCCHC6Q5VYS8 1495 aaKnown RBP13.15□□□□□ -0.3
UBE2D3-204ENST00000349311 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP13.13□□□□□ -0.31
UBE2D3-204ENST00000349311 MRPL50Q8N5N7 158 aaKnown RBP13.13□□□□□ -0.31
UBE2D3-204ENST00000349311 RCCD1A6NED2 376 aa13.12□□□□□ -0.31
UBE2D3-204ENST00000349311 SPNS2Q8IVW8 549 aa13.11□□□□□ -0.31
UBE2D3-204ENST00000349311 ZFRQ96KR1 1074 aaKnown RBP13.11□□□□□ -0.31
UBE2D3-204ENST00000349311 TMEM134Q9H6X4 195 aa13.11□□□□□ -0.31
UBE2D3-204ENST00000349311 DNAJB2P25686 324 aa13.1□□□□□ -0.31
UBE2D3-204ENST00000349311 REPIN1Q9BWE0 567 aaKnown RBP13.07□□□□□ -0.32
UBE2D3-204ENST00000349311 PDE4DQ08499 809 aa13.06□□□□□ -0.32
UBE2D3-204ENST00000349311 DCAF1Q9Y4B6 1507 aa13.05□□□□□ -0.32
UBE2D3-204ENST00000349311 DAXXQ9UER7 740 aaPredicted RBP13.04□□□□□ -0.32
UBE2D3-204ENST00000349311 SWT1Q5T5J6 900 aaKnown RBP13.03□□□□□ -0.32
UBE2D3-204ENST00000349311 NLRP7Q8WX94 980 aa13.03□□□□□ -0.32
UBE2D3-204ENST00000349311 SAMD7Q7Z3H4 446 aa13.02□□□□□ -0.33
UBE2D3-204ENST00000349311 PARP9Q8IXQ6 854 aa13.02□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 18.1 ms