RNA–Protein interactions for RNA: ENST00000346562.6

NPAS3-201, Transcript of neuronal PAS domain protein 3, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene NPAS3, Length 5,847 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPAS3-201ENST00000346562 GZF1Q9H116 711 aaPredicted RBP28.7■■■□□ 2.18
NPAS3-201ENST00000346562 PHLDB1Q86UU1 1377 aa28.7■■■□□ 2.18
NPAS3-201ENST00000346562 SMARCA2P51531 1590 aa28.69■■■□□ 2.18
NPAS3-201ENST00000346562 RAB3GAP2Q9H2M9 1393 aa28.69■■■□□ 2.18
NPAS3-201ENST00000346562 HNRNPMP52272 730 aaKnown RBP eCLIP28.69■■■□□ 2.18
NPAS3-201ENST00000346562 USP35Q9P2H5 1018 aa28.69■■■□□ 2.18
NPAS3-201ENST00000346562 CCDC18Q5T9S5 1454 aa28.68■■■□□ 2.18
NPAS3-201ENST00000346562 DEKP35659 375 aaKnown RBP28.68■■■□□ 2.18
NPAS3-201ENST00000346562 CCDC146Q8IYE0 955 aa28.67■■■□□ 2.18
NPAS3-201ENST00000346562 CHMP4CQ96CF2 233 aa28.67■■■□□ 2.18
NPAS3-201ENST00000346562 ST18O60284 1047 aa28.67■■■□□ 2.18
NPAS3-201ENST00000346562 CREBRFQ8IUR6 639 aa28.67■■■□□ 2.18
NPAS3-201ENST00000346562 PHF14O94880 888 aa28.67■■■□□ 2.18
NPAS3-201ENST00000346562 TPM3P06753 285 aa28.66■■■□□ 2.18
NPAS3-201ENST00000346562 C1orf141Q5JVX7 400 aa28.66■■■□□ 2.18
NPAS3-201ENST00000346562 UACAQ9BZF9 1416 aa28.65■■■□□ 2.18
NPAS3-201ENST00000346562 PDE3BQ13370 1112 aa28.64■■■□□ 2.18
NPAS3-201ENST00000346562 PDE4CQ08493 712 aa28.64■■■□□ 2.17
NPAS3-201ENST00000346562 NOL8Q76FK4 1167 aaKnown RBP28.63■■■□□ 2.17
NPAS3-201ENST00000346562 TDRD9Q8NDG6 1382 aaKnown RBP28.63■■■□□ 2.17
NPAS3-201ENST00000346562 GOLGA6L3A6NEY3 463 aa28.63■■■□□ 2.17
NPAS3-201ENST00000346562 KANK4Q5T7N3 995 aaPredicted RBP28.63■■■□□ 2.17
NPAS3-201ENST00000346562 SF3A1Q15459 793 aaKnown RBP28.63■■■□□ 2.17
NPAS3-201ENST00000346562 NLRP13Q86W25 1043 aa28.63■■■□□ 2.17
NPAS3-201ENST00000346562 CECR2Q9BXF3 1484 aa28.61■■■□□ 2.17
NPAS3-201ENST00000346562 RBM19Q9Y4C8 960 aaKnown RBP28.61■■■□□ 2.17
NPAS3-201ENST00000346562 CLUAP1Q96AJ1 413 aa28.6■■■□□ 2.17
NPAS3-201ENST00000346562 EVA1CP58658 441 aa28.6■■■□□ 2.17
NPAS3-201ENST00000346562 AMOTL1Q8IY63 956 aa28.58■■■□□ 2.17
NPAS3-201ENST00000346562 AKAP17AQ02040 695 aaKnown RBP28.57■■■□□ 2.16
NPAS3-201ENST00000346562 COG3Q96JB2 828 aa28.57■■■□□ 2.16
NPAS3-201ENST00000346562 NOL10Q9BSC4 688 aaKnown RBP28.57■■■□□ 2.16
NPAS3-201ENST00000346562 H3BQV1 296 aa28.57■■■□□ 2.16
NPAS3-201ENST00000346562 IFFO2Q5TF58 517 aa28.57■■■□□ 2.16
NPAS3-201ENST00000346562 KIF15Q9NS87 1388 aa28.56■■■□□ 2.16
NPAS3-201ENST00000346562 NUTM2FA1L443 756 aa28.56■■■□□ 2.16
NPAS3-201ENST00000346562 LRRFIP1Q32MZ4 808 aaKnown RBP28.56■■■□□ 2.16
NPAS3-201ENST00000346562 TPD52L1Q16890 204 aaPredicted RBP28.55■■■□□ 2.16
NPAS3-201ENST00000346562 CCDC88BA6NC98 1476 aa28.55■■■□□ 2.16
NPAS3-201ENST00000346562 TRAK1Q9UPV9 953 aa28.55■■■□□ 2.16
NPAS3-201ENST00000346562 TRIM34Q9BYJ4 488 aa28.55■■■□□ 2.16
NPAS3-201ENST00000346562 TPM2P07951 284 aa28.54■■■□□ 2.16
NPAS3-201ENST00000346562 SYNE3Q6ZMZ3 975 aa28.53■■■□□ 2.16
NPAS3-201ENST00000346562 TTC5Q8N0Z6 440 aa28.52■■■□□ 2.16
NPAS3-201ENST00000346562 FOXD4L1Q9NU39 408 aa28.52■■■□□ 2.16
NPAS3-201ENST00000346562 MSH5O43196 834 aa28.51■■■□□ 2.15
NPAS3-201ENST00000346562 FAM184AQ8NB25 1140 aa28.51■■■□□ 2.15
NPAS3-201ENST00000346562 CTDP1Q9Y5B0 961 aaPredicted RBP28.51■■■□□ 2.15
NPAS3-201ENST00000346562 TCEAL9Q9UHQ7 104 aa28.51■■■□□ 2.15
NPAS3-201ENST00000346562 TSR1Q2NL82 804 aaKnown RBP28.5■■■□□ 2.15
NPAS3-201ENST00000346562 CCDC144AA2RUR9 1427 aa28.5■■■□□ 2.15
NPAS3-201ENST00000346562 L3MBTL2Q969R5 705 aa28.5■■■□□ 2.15
NPAS3-201ENST00000346562 PES1O00541 588 aaKnown RBP28.49■■■□□ 2.15
NPAS3-201ENST00000346562 ABCC8Q09428 1581 aa28.49■■■□□ 2.15
NPAS3-201ENST00000346562 NEXNQ0ZGT2 675 aa28.49■■■□□ 2.15
NPAS3-201ENST00000346562 EVC2Q86UK5 1308 aa28.48■■■□□ 2.15
NPAS3-201ENST00000346562 CGNL1Q0VF96 1302 aa28.48■■■□□ 2.15
NPAS3-201ENST00000346562 RILPL2Q969X0 211 aa28.48■■■□□ 2.15
NPAS3-201ENST00000346562 MYBBP1AQ9BQG0 1328 aaKnown RBP28.48■■■□□ 2.15
NPAS3-201ENST00000346562 RAPGEF2Q9Y4G8 1499 aa28.47■■■□□ 2.15
NPAS3-201ENST00000346562 TEFQ10587 303 aa28.47■■■□□ 2.15
NPAS3-201ENST00000346562 VGFO15240 615 aaPredicted RBP28.47■■■□□ 2.15
NPAS3-201ENST00000346562 ATP6V1DQ9Y5K8 247 aa28.46■■■□□ 2.15
NPAS3-201ENST00000346562 AMER1Q5JTC6 1135 aaPredicted RBP28.46■■■□□ 2.15
NPAS3-201ENST00000346562 DDX11L8A8MPP1 907 aa28.45■■■□□ 2.14
NPAS3-201ENST00000346562 TPM1P09493 284 aa28.43■■■□□ 2.14
NPAS3-201ENST00000346562 FHOD3Q2V2M9 1422 aa28.43■■■□□ 2.14
NPAS3-201ENST00000346562 RRP7AQ9Y3A4 280 aaKnown RBP28.42■■■□□ 2.14
NPAS3-201ENST00000346562 MEX3CQ5U5Q3 659 aaKnown RBP28.42■■■□□ 2.14
NPAS3-201ENST00000346562 IPO9Q96P70 1041 aaKnown RBP28.42■■■□□ 2.14
NPAS3-201ENST00000346562 TNNT3P45378 269 aaPredicted RBP28.41■■■□□ 2.14
NPAS3-201ENST00000346562 DIAPH3Q9NSV4 1193 aa28.41■■■□□ 2.14
NPAS3-201ENST00000346562 CPLX2Q6PUV4 134 aaKnown RBP28.4■■■□□ 2.14
NPAS3-201ENST00000346562 RUFY2Q8WXA3 655 aa28.39■■■□□ 2.14
NPAS3-201ENST00000346562 ARID3AQ99856 593 aa28.39■■■□□ 2.14
NPAS3-201ENST00000346562 ZBTB4Q9P1Z0 1013 aaPredicted RBP28.39■■■□□ 2.14
NPAS3-201ENST00000346562 TRIM29Q14134 588 aa28.39■■■□□ 2.14
NPAS3-201ENST00000346562 ZKSCAN2Q63HK3 967 aa28.39■■■□□ 2.14
NPAS3-201ENST00000346562 FOXD4L5Q5VV16 416 aaPredicted RBP28.39■■■□□ 2.13
NPAS3-201ENST00000346562 FOXD4L4Q8WXT5 416 aaPredicted RBP28.39■■■□□ 2.13
NPAS3-201ENST00000346562 ANKRD45Q5TZF3 282 aa28.38■■■□□ 2.13
NPAS3-201ENST00000346562 E9PSI1 815 aa28.37■■■□□ 2.13
NPAS3-201ENST00000346562 GOLGA6L19H0YKK7 550 aa28.37■■■□□ 2.13
NPAS3-201ENST00000346562 PANK3Q9H999 370 aa28.37■■■□□ 2.13
NPAS3-201ENST00000346562 CCDC47Q96A33 483 aaKnown RBP28.37■■■□□ 2.13
NPAS3-201ENST00000346562 RAD21O60216 631 aa28.37■■■□□ 2.13
NPAS3-201ENST00000346562 C9orf78Q9NZ63 289 aaPredicted RBP28.36■■■□□ 2.13
NPAS3-201ENST00000346562 CENPQQ7L2Z9 268 aaPredicted RBP28.36■■■□□ 2.13
NPAS3-201ENST00000346562 JPH4Q96JJ6 628 aa28.34■■■□□ 2.13
NPAS3-201ENST00000346562 CCDC70Q6NSX1 233 aa28.34■■■□□ 2.13
NPAS3-201ENST00000346562 DDX58O95786 925 aaKnown RBP28.33■■■□□ 2.13
NPAS3-201ENST00000346562 VPS37DQ86XT2 251 aa28.33■■■□□ 2.13
NPAS3-201ENST00000346562 ELL2O00472 640 aaPredicted RBP28.32■■■□□ 2.12
NPAS3-201ENST00000346562 BECN2A8MW95 431 aa28.32■■■□□ 2.12
NPAS3-201ENST00000346562 NGEFQ8N5V2 710 aa28.32■■■□□ 2.12
NPAS3-201ENST00000346562 MCTP1Q6DN14 999 aa28.31■■■□□ 2.12
NPAS3-201ENST00000346562 EIF2S2P20042 333 aaKnown RBP28.31■■■□□ 2.12
NPAS3-201ENST00000346562 ROCK1Q13464 1354 aa28.3■■■□□ 2.12
NPAS3-201ENST00000346562 IFIT2P09913 472 aaKnown RBP28.3■■■□□ 2.12
NPAS3-201ENST00000346562 ZKSCAN1P17029 563 aaPredicted RBP28.3■■■□□ 2.12
Retrieved 100 of 20,778 RNA–protein pairs in 12.2 ms