RNA–Protein interactions for RNA: ENST00000344626.8

SMARCA4-201, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4, humanhuman

TSL 1 (best) BASIC

Gene SMARCA4, Length 5,392 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA4-201ENST00000344626 TMEM132EQ6IEE7 984 aa21.22■□□□□ 0.99
SMARCA4-201ENST00000344626 STAC3Q96MF2 364 aa21.22■□□□□ 0.99
SMARCA4-201ENST00000344626 CALD1Q05682 793 aaKnown RBP21.2■□□□□ 0.98
SMARCA4-201ENST00000344626 MSH5O43196 834 aa21.2■□□□□ 0.98
SMARCA4-201ENST00000344626 EVC2Q86UK5 1308 aa21.2■□□□□ 0.98
SMARCA4-201ENST00000344626 PLB1Q6P1J6 1458 aa21.19■□□□□ 0.98
SMARCA4-201ENST00000344626 ST20-MTHFSA0A0A6YYL1 179 aa21.18■□□□□ 0.98
SMARCA4-201ENST00000344626 NUTM2BA6NNL0 878 aaPredicted RBP21.18■□□□□ 0.98
SMARCA4-201ENST00000344626 NUTM2EB1AL46 878 aaPredicted RBP21.18■□□□□ 0.98
SMARCA4-201ENST00000344626 NUTM2AQ8IVF1 878 aaPredicted RBP21.18■□□□□ 0.98
SMARCA4-201ENST00000344626 CHMP4AQ9BY43 222 aa21.18■□□□□ 0.98
SMARCA4-201ENST00000344626 FRAT1Q92837 279 aaPredicted RBP21.17■□□□□ 0.98
SMARCA4-201ENST00000344626 COG3Q96JB2 828 aa21.17■□□□□ 0.98
SMARCA4-201ENST00000344626 PHLDB1Q86UU1 1377 aa21.17■□□□□ 0.98
SMARCA4-201ENST00000344626 EIF5BO60841 1220 aaKnown RBP21.17■□□□□ 0.98
SMARCA4-201ENST00000344626 ESCO1Q5FWF5 840 aa21.17■□□□□ 0.98
SMARCA4-201ENST00000344626 HECW1Q76N89 1606 aa21.16■□□□□ 0.98
SMARCA4-201ENST00000344626 NUTM2GQ5VZR2 741 aa21.16■□□□□ 0.98
SMARCA4-201ENST00000344626 SYTL4Q96C24 671 aaPredicted RBP21.15■□□□□ 0.98
SMARCA4-201ENST00000344626 GOLGA2Q08379 1002 aa21.15■□□□□ 0.98
SMARCA4-201ENST00000344626 CCER2I3L3R5 266 aa21.14■□□□□ 0.98
SMARCA4-201ENST00000344626 ARAP1Q96P48 1450 aa21.14■□□□□ 0.97
SMARCA4-201ENST00000344626 USP35Q9P2H5 1018 aa21.14■□□□□ 0.97
SMARCA4-201ENST00000344626 CUL7Q14999 1698 aa21.13■□□□□ 0.97
SMARCA4-201ENST00000344626 IQGAP2Q13576 1575 aa21.13■□□□□ 0.97
SMARCA4-201ENST00000344626 EHBP1L1Q8N3D4 1523 aa21.13■□□□□ 0.97
SMARCA4-201ENST00000344626 SLC52A1Q9NWF4 448 aa21.13■□□□□ 0.97
SMARCA4-201ENST00000344626 DHX57Q6P158 1386 aaKnown RBP21.12■□□□□ 0.97
SMARCA4-201ENST00000344626 IRX6P78412 446 aaPredicted RBP21.12■□□□□ 0.97
SMARCA4-201ENST00000344626 OS9Q13438 667 aaPredicted RBP21.12■□□□□ 0.97
SMARCA4-201ENST00000344626 CASC1Q6TDU7 716 aa21.11■□□□□ 0.97
SMARCA4-201ENST00000344626 TMX4Q9H1E5 349 aaPredicted RBP21.1■□□□□ 0.97
SMARCA4-201ENST00000344626 GTF2E1P29083 439 aaPredicted RBP21.09■□□□□ 0.97
SMARCA4-201ENST00000344626 MIA2Q96PC5 1412 aa21.07■□□□□ 0.96
SMARCA4-201ENST00000344626 CFAP70Q5T0N1 1121 aa21.06■□□□□ 0.96
SMARCA4-201ENST00000344626 PMFBP1Q8TBY8 1022 aa21.06■□□□□ 0.96
SMARCA4-201ENST00000344626 NLRP6P59044 892 aa21.06■□□□□ 0.96
SMARCA4-201ENST00000344626 C9orf84Q5VXU9 1444 aa21.05■□□□□ 0.96
SMARCA4-201ENST00000344626 CENPJQ9HC77 1338 aaPredicted RBP21.05■□□□□ 0.96
SMARCA4-201ENST00000344626 ARHGEF11O15085 1522 aa21.04■□□□□ 0.96
SMARCA4-201ENST00000344626 CDK13Q14004 1512 aaKnown RBP21.04■□□□□ 0.96
SMARCA4-201ENST00000344626 NLRP2Q9NX02 1062 aa21.04■□□□□ 0.96
SMARCA4-201ENST00000344626 KLHL34Q8N239 644 aa21.03■□□□□ 0.96
SMARCA4-201ENST00000344626 ADGRL1O94910 1474 aa21.03■□□□□ 0.96
SMARCA4-201ENST00000344626 DMRT2Q9Y5R5 561 aa21.02■□□□□ 0.96
SMARCA4-201ENST00000344626 LMOD3Q0VAK6 560 aa21.02■□□□□ 0.95
SMARCA4-201ENST00000344626 C1orf141Q5JVX7 400 aa21.01■□□□□ 0.95
SMARCA4-201ENST00000344626 IPO8O15397 1037 aaKnown RBP21.01■□□□□ 0.95
SMARCA4-201ENST00000344626 GPRASP1Q5JY77 1395 aa21.01■□□□□ 0.95
SMARCA4-201ENST00000344626 CGNL1Q0VF96 1302 aa21.01■□□□□ 0.95
SMARCA4-201ENST00000344626 FBXO31Q5XUX0 539 aaPredicted RBP21■□□□□ 0.95
SMARCA4-201ENST00000344626 CABP2Q9NPB3 220 aa21■□□□□ 0.95
SMARCA4-201ENST00000344626 STRN4Q9NRL3 753 aa21■□□□□ 0.95
SMARCA4-201ENST00000344626 PANK3Q9H999 370 aa21■□□□□ 0.95
SMARCA4-201ENST00000344626 ABTB2Q8N961 1025 aa20.99■□□□□ 0.95
SMARCA4-201ENST00000344626 ANP32BQ92688 251 aaKnown RBP20.99■□□□□ 0.95
SMARCA4-201ENST00000344626 SUPT16HQ9Y5B9 1047 aaKnown RBP20.99■□□□□ 0.95
SMARCA4-201ENST00000344626 EPRSP07814 1512 aaKnown RBP20.98■□□□□ 0.95
SMARCA4-201ENST00000344626 DENND4BO75064 1496 aaPredicted RBP20.98■□□□□ 0.95
SMARCA4-201ENST00000344626 PRAM1Q96QH2 718 aa20.98■□□□□ 0.95
SMARCA4-201ENST00000344626 RBM33Q96EV2 1170 aaKnown RBP20.97■□□□□ 0.95
SMARCA4-201ENST00000344626 NLRP13Q86W25 1043 aa20.97■□□□□ 0.95
SMARCA4-201ENST00000344626 RAPGEF4Q8WZA2 1011 aa20.96■□□□□ 0.95
SMARCA4-201ENST00000344626 TEFQ10587 303 aa20.96■□□□□ 0.95
SMARCA4-201ENST00000344626 RRBP1Q9P2E9 1410 aaKnown RBP20.96■□□□□ 0.95
SMARCA4-201ENST00000344626 SF3B2Q13435 895 aaKnown RBP20.96■□□□□ 0.95
SMARCA4-201ENST00000344626 ASXL2Q76L83 1435 aa20.95■□□□□ 0.94
SMARCA4-201ENST00000344626 STK31Q9BXU1 1019 aa20.95■□□□□ 0.94
SMARCA4-201ENST00000344626 USP47Q96K76 1375 aa20.95■□□□□ 0.94
SMARCA4-201ENST00000344626 XPCQ01831 940 aaPredicted RBP20.94■□□□□ 0.94
SMARCA4-201ENST00000344626 AKNAQ7Z591 1439 aa20.94■□□□□ 0.94
SMARCA4-201ENST00000344626 PPP6R1Q9UPN7 881 aa20.93■□□□□ 0.94
SMARCA4-201ENST00000344626 HSPA2P54652 639 aa20.93■□□□□ 0.94
SMARCA4-201ENST00000344626 G3V3G9 751 aa20.92■□□□□ 0.94
SMARCA4-201ENST00000344626 BECN1Q14457 450 aa20.92■□□□□ 0.94
SMARCA4-201ENST00000344626 DCAF8Q5TAQ9 597 aa20.92■□□□□ 0.94
SMARCA4-201ENST00000344626 CHMP3Q9Y3E7 222 aa20.92■□□□□ 0.94
SMARCA4-201ENST00000344626 HFM1A2PYH4 1435 aa20.91■□□□□ 0.94
SMARCA4-201ENST00000344626 HDAC5Q9UQL6 1122 aa20.91■□□□□ 0.94
SMARCA4-201ENST00000344626 FANCAO15360 1455 aa20.9■□□□□ 0.94
SMARCA4-201ENST00000344626 CCDC146Q8IYE0 955 aa20.89■□□□□ 0.94
SMARCA4-201ENST00000344626 SUPT6HQ7KZ85 1726 aaKnown RBP20.89■□□□□ 0.94
SMARCA4-201ENST00000344626 TTC5Q8N0Z6 440 aa20.89■□□□□ 0.93
SMARCA4-201ENST00000344626 GGNBP2Q9H3C7 697 aa20.88■□□□□ 0.93
SMARCA4-201ENST00000344626 PRDM11Q9NQV5 511 aa20.88■□□□□ 0.93
SMARCA4-201ENST00000344626 TIAM1Q13009 1591 aa20.88■□□□□ 0.93
SMARCA4-201ENST00000344626 UBAP1LF5GYI3 381 aa20.88■□□□□ 0.93
SMARCA4-201ENST00000344626 TAF7LQ5H9L4 462 aa20.87■□□□□ 0.93
SMARCA4-201ENST00000344626 NGEFQ8N5V2 710 aa20.87■□□□□ 0.93
SMARCA4-201ENST00000344626 BIVM-ERCC5R4GMW8 1640 aa20.86■□□□□ 0.93
SMARCA4-201ENST00000344626 DDRGK1Q96HY6 314 aa20.86■□□□□ 0.93
SMARCA4-201ENST00000344626 PPP4R2Q9NY27 417 aa20.85■□□□□ 0.93
SMARCA4-201ENST00000344626 MYBBP1AQ9BQG0 1328 aaKnown RBP20.85■□□□□ 0.93
SMARCA4-201ENST00000344626 TEX14Q8IWB6 1497 aa20.85■□□□□ 0.93
SMARCA4-201ENST00000344626 TAOK2Q9UL54 1235 aa20.84■□□□□ 0.93
SMARCA4-201ENST00000344626 DCAF8L1A6NGE4 600 aa20.84■□□□□ 0.93
SMARCA4-201ENST00000344626 RRP7AQ9Y3A4 280 aaKnown RBP20.84■□□□□ 0.93
SMARCA4-201ENST00000344626 APBB1O00213 710 aa20.83■□□□□ 0.92
SMARCA4-201ENST00000344626 IDI1Q13907 227 aa20.83■□□□□ 0.92
SMARCA4-201ENST00000344626 ADAMTS2O95450 1211 aa20.82■□□□□ 0.92
Retrieved 100 of 20,778 RNA–protein pairs in 15.3 ms