RNA–Protein interactions for RNA: ENST00000340437.8

CPSF7-201, Transcript of cleavage and polyadenylation specific factor 7, humanhuman

TSL 1 (best) BASIC

Gene CPSF7, Length 3,695 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF7-201ENST00000340437 ERCC6Q03468 1493 aa19.12■□□□□ 0.65
CPSF7-201ENST00000340437 KIF14Q15058 1648 aa19.11■□□□□ 0.65
CPSF7-201ENST00000340437 CARMIL2Q6F5E8 1435 aa19.1■□□□□ 0.65
CPSF7-201ENST00000340437 IFT140Q96RY7 1462 aa19.08■□□□□ 0.64
CPSF7-201ENST00000340437 PDE4AP27815 886 aa19.08■□□□□ 0.64
CPSF7-201ENST00000340437 ARID4BQ4LE39 1312 aaPredicted RBP19.07■□□□□ 0.64
CPSF7-201ENST00000340437 CRBNQ96SW2 442 aa19.07■□□□□ 0.64
CPSF7-201ENST00000340437 BRD4O60885 1362 aaPredicted RBP19.06■□□□□ 0.64
CPSF7-201ENST00000340437 RNF123Q5XPI4 1314 aa19.06■□□□□ 0.64
CPSF7-201ENST00000340437 SLC4A3P48751 1232 aa19.03■□□□□ 0.64
CPSF7-201ENST00000340437 RTN4Q9NQC3 1192 aaKnown RBP19.03■□□□□ 0.64
CPSF7-201ENST00000340437 CCDC144AA2RUR9 1427 aa19.03■□□□□ 0.64
CPSF7-201ENST00000340437 NEFMP07197 916 aa19.02■□□□□ 0.64
CPSF7-201ENST00000340437 C20orf194Q5TEA3 1177 aa19.02■□□□□ 0.64
CPSF7-201ENST00000340437 MBD5Q9P267 1494 aa19.02■□□□□ 0.63
CPSF7-201ENST00000340437 KDM5CP41229 1560 aa19.01■□□□□ 0.63
CPSF7-201ENST00000340437 WDR43Q15061 677 aaKnown RBP eCLIP19■□□□□ 0.63
CPSF7-201ENST00000340437 ADAMTS8Q9UP79 889 aa19■□□□□ 0.63
CPSF7-201ENST00000340437 TCERG1O14776 1098 aaKnown RBP19■□□□□ 0.63
CPSF7-201ENST00000340437 RALGAPBQ86X10 1494 aa19■□□□□ 0.63
CPSF7-201ENST00000340437 TMF1P82094 1093 aa18.99■□□□□ 0.63
CPSF7-201ENST00000340437 CCDC146Q8IYE0 955 aa18.99■□□□□ 0.63
CPSF7-201ENST00000340437 KNSTRNQ9Y448 316 aa18.98■□□□□ 0.63
CPSF7-201ENST00000340437 DISP3Q9P2K9 1392 aa18.98■□□□□ 0.63
CPSF7-201ENST00000340437 RGS3P49796 1198 aa18.97■□□□□ 0.63
CPSF7-201ENST00000340437 DAXXQ9UER7 740 aaPredicted RBP18.97■□□□□ 0.63
CPSF7-201ENST00000340437 MAGI1Q96QZ7 1491 aaPredicted RBP18.97■□□□□ 0.63
CPSF7-201ENST00000340437 CHGAP10645 457 aaKnown RBP18.97■□□□□ 0.63
CPSF7-201ENST00000340437 ATP10BO94823 1461 aa18.97■□□□□ 0.63
CPSF7-201ENST00000340437 LRPPRCP42704 1394 aaKnown RBP18.97■□□□□ 0.63
CPSF7-201ENST00000340437 PER1O15534 1290 aaPredicted RBP18.96■□□□□ 0.63
CPSF7-201ENST00000340437 PTPRGP23470 1445 aa18.94■□□□□ 0.62
CPSF7-201ENST00000340437 PDE3BQ13370 1112 aa18.94■□□□□ 0.62
CPSF7-201ENST00000340437 EIF4G3O43432 1585 aaKnown RBP18.93■□□□□ 0.62
CPSF7-201ENST00000340437 ADGRL2O95490 1459 aa18.93■□□□□ 0.62
CPSF7-201ENST00000340437 UHRF1BP1Q6BDS2 1440 aa18.93■□□□□ 0.62
CPSF7-201ENST00000340437 BACH2Q9BYV9 841 aa18.93■□□□□ 0.62
CPSF7-201ENST00000340437 CEP170Q5SW79 1584 aa18.92■□□□□ 0.62
CPSF7-201ENST00000340437 ITSN2Q9NZM3 1697 aa18.91■□□□□ 0.62
CPSF7-201ENST00000340437 TESK2Q96S53 571 aa18.91■□□□□ 0.62
CPSF7-201ENST00000340437 TNNT2P45379 298 aaPredicted RBP18.9■□□□□ 0.62
CPSF7-201ENST00000340437 SYNJ2O15056 1496 aa18.9■□□□□ 0.62
CPSF7-201ENST00000340437 NEUROD2Q15784 382 aa18.89■□□□□ 0.61
CPSF7-201ENST00000340437 PARD3Q8TEW0 1356 aa18.89■□□□□ 0.61
CPSF7-201ENST00000340437 ADGBQ8N7X0 1667 aa18.88■□□□□ 0.61
CPSF7-201ENST00000340437 PRAG1Q86YV5 1406 aa18.87■□□□□ 0.61
CPSF7-201ENST00000340437 POLR1AO95602 1720 aaPredicted RBP18.86■□□□□ 0.61
CPSF7-201ENST00000340437 IL27Q8NEV9 243 aa18.86■□□□□ 0.61
CPSF7-201ENST00000340437 PPP2R1AP30153 589 aa18.85■□□□□ 0.61
CPSF7-201ENST00000340437 ERBINQ96RT1 1412 aa18.85■□□□□ 0.61
CPSF7-201ENST00000340437 FAM135AQ9P2D6 1515 aa18.84■□□□□ 0.61
CPSF7-201ENST00000340437 PLEKHH2Q8IVE3 1493 aa18.84■□□□□ 0.61
CPSF7-201ENST00000340437 APAF1O14727 1248 aa18.83■□□□□ 0.61
CPSF7-201ENST00000340437 CANXP27824 592 aaKnown RBP18.83■□□□□ 0.6
CPSF7-201ENST00000340437 ABCC10Q5T3U5 1492 aa18.83■□□□□ 0.6
CPSF7-201ENST00000340437 GOLGA2Q08379 1002 aa18.82■□□□□ 0.6
CPSF7-201ENST00000340437 CCDC141Q6ZP82 1450 aa18.82■□□□□ 0.6
CPSF7-201ENST00000340437 RSPH4AQ5TD94 716 aa18.81■□□□□ 0.6
CPSF7-201ENST00000340437 AFAP1Q8N556 730 aa18.81■□□□□ 0.6
CPSF7-201ENST00000340437 ARHGAP5Q13017 1502 aa18.81■□□□□ 0.6
CPSF7-201ENST00000340437 ARHGEF12Q9NZN5 1544 aa18.8■□□□□ 0.6
CPSF7-201ENST00000340437 MS4A1P11836 297 aa18.8■□□□□ 0.6
CPSF7-201ENST00000340437 A2MP01023 1474 aa18.79■□□□□ 0.6
CPSF7-201ENST00000340437 CDC42BPAQ5VT25 1732 aa18.79■□□□□ 0.6
CPSF7-201ENST00000340437 BCAR3O75815 825 aa18.79■□□□□ 0.6
CPSF7-201ENST00000340437 PLPPR3Q6T4P5 718 aa18.78■□□□□ 0.6
CPSF7-201ENST00000340437 FRAT1Q92837 279 aaPredicted RBP18.78■□□□□ 0.6
CPSF7-201ENST00000340437 PLEKHH1Q9ULM0 1364 aa18.77■□□□□ 0.6
CPSF7-201ENST00000340437 GOLGA6L2Q8N9W4 650 aaPredicted RBP18.77■□□□□ 0.6
CPSF7-201ENST00000340437 PLA2R1Q13018 1463 aa18.77■□□□□ 0.6
CPSF7-201ENST00000340437 RRP7AQ9Y3A4 280 aaKnown RBP18.77■□□□□ 0.6
CPSF7-201ENST00000340437 DUSP27Q5VZP5 1158 aa18.77■□□□□ 0.59
CPSF7-201ENST00000340437 SYCP2Q9BX26 1530 aa18.76■□□□□ 0.59
CPSF7-201ENST00000340437 SPINK5Q9NQ38 1064 aaPredicted RBP18.76■□□□□ 0.59
CPSF7-201ENST00000340437 CROCC2H7BZ55 1655 aa18.76■□□□□ 0.59
CPSF7-201ENST00000340437 PPM1GO15355 546 aaPredicted RBP18.76■□□□□ 0.59
CPSF7-201ENST00000340437 DDRGK1Q96HY6 314 aa18.75■□□□□ 0.59
CPSF7-201ENST00000340437 SHANK2Q9UPX8 1470 aa18.75■□□□□ 0.59
CPSF7-201ENST00000340437 NUP160Q12769 1436 aa18.74■□□□□ 0.59
CPSF7-201ENST00000340437 CFAP70Q5T0N1 1121 aa18.73■□□□□ 0.59
CPSF7-201ENST00000340437 EFCAB2Q5VUJ9 269 aa18.73■□□□□ 0.59
CPSF7-201ENST00000340437 KDM5DQ9BY66 1539 aa18.73■□□□□ 0.59
CPSF7-201ENST00000340437 KIF3BO15066 747 aa18.72■□□□□ 0.59
CPSF7-201ENST00000340437 WASHC2CQ9Y4E1 1318 aa18.72■□□□□ 0.59
CPSF7-201ENST00000340437 COL17A1Q9UMD9 1497 aaPredicted RBP18.72■□□□□ 0.59
CPSF7-201ENST00000340437 AMER1Q5JTC6 1135 aaPredicted RBP18.71■□□□□ 0.59
CPSF7-201ENST00000340437 CENPQQ7L2Z9 268 aaPredicted RBP18.71■□□□□ 0.59
CPSF7-201ENST00000340437 BCL2L13Q9BXK5 485 aa18.71■□□□□ 0.59
CPSF7-201ENST00000340437 SPAG9O60271 1321 aaKnown RBP18.71■□□□□ 0.58
CPSF7-201ENST00000340437 NFKBIBQ15653 356 aa18.7■□□□□ 0.58
CPSF7-201ENST00000340437 CDCA8Q53HL2 280 aa18.7■□□□□ 0.58
CPSF7-201ENST00000340437 DMRT2Q9Y5R5 561 aa18.7■□□□□ 0.58
CPSF7-201ENST00000340437 ABCA8O94911 1581 aa18.7■□□□□ 0.58
CPSF7-201ENST00000340437 COG6Q9Y2V7 657 aa18.7■□□□□ 0.58
CPSF7-201ENST00000340437 SAMD9LQ8IVG5 1584 aa18.69■□□□□ 0.58
CPSF7-201ENST00000340437 ADCY10Q96PN6 1610 aa18.69■□□□□ 0.58
CPSF7-201ENST00000340437 FAM161AQ3B820 660 aa18.69■□□□□ 0.58
CPSF7-201ENST00000340437 PANK1Q8TE04 598 aa18.69■□□□□ 0.58
CPSF7-201ENST00000340437 NUTM2DQ5VT03 806 aaPredicted RBP18.68■□□□□ 0.58
CPSF7-201ENST00000340437 ARXQ96QS3 562 aa18.68■□□□□ 0.58
Retrieved 100 of 20,778 RNA–protein pairs in 14.5 ms