RNA–Protein interactions for RNA: ENST00000339162.11

PDLIM2-203, Transcript of PDZ and LIM domain 2, humanhuman

TSL 1 (best) BASIC

Gene PDLIM2, Length 2,226 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM2-203ENST00000339162 PLA2R1Q13018 1463 aa31.74■■■□□ 2.67
PDLIM2-203ENST00000339162 KIDINS220Q9ULH0 1771 aa31.73■■■□□ 2.67
PDLIM2-203ENST00000339162 DHX29Q7Z478 1369 aaKnown RBP31.72■■■□□ 2.67
PDLIM2-203ENST00000339162 RAPGEF3O95398 923 aa31.72■■■□□ 2.67
PDLIM2-203ENST00000339162 CCDC144AA2RUR9 1427 aa31.71■■■□□ 2.67
PDLIM2-203ENST00000339162 EIF4G2P78344 907 aaKnown RBP eCLIP31.71■■■□□ 2.67
PDLIM2-203ENST00000339162 FAM69CQ0P6D2 419 aa31.69■■■□□ 2.66
PDLIM2-203ENST00000339162 KDM2AQ9Y2K7 1162 aa31.69■■■□□ 2.66
PDLIM2-203ENST00000339162 NEO1Q92859 1461 aa31.67■■■□□ 2.66
PDLIM2-203ENST00000339162 MAP3K4Q9Y6R4 1608 aa31.66■■■□□ 2.66
PDLIM2-203ENST00000339162 DCAF11Q8TEB1 546 aa31.66■■■□□ 2.66
PDLIM2-203ENST00000339162 KDM5CP41229 1560 aa31.66■■■□□ 2.66
PDLIM2-203ENST00000339162 RGL3Q3MIN7 710 aa31.65■■■□□ 2.66
PDLIM2-203ENST00000339162 YTHDC1Q96MU7 727 aaKnown RBP31.63■■■□□ 2.65
PDLIM2-203ENST00000339162 DEPDC5O75140 1603 aa31.63■■■□□ 2.65
PDLIM2-203ENST00000339162 MLH3Q9UHC1 1453 aa31.6■■■□□ 2.65
PDLIM2-203ENST00000339162 GLI2P10070 1586 aa31.6■■■□□ 2.65
PDLIM2-203ENST00000339162 A2MP01023 1474 aa31.6■■■□□ 2.65
PDLIM2-203ENST00000339162 KANK1Q14678 1352 aa31.59■■■□□ 2.65
PDLIM2-203ENST00000339162 HECW2Q9P2P5 1572 aa31.58■■■□□ 2.65
PDLIM2-203ENST00000339162 E9PCH4 1651 aa31.58■■■□□ 2.65
PDLIM2-203ENST00000339162 DIP2BQ9P265 1576 aa31.57■■■□□ 2.64
PDLIM2-203ENST00000339162 EIF2AK4Q9P2K8 1649 aaKnown RBP31.57■■■□□ 2.64
PDLIM2-203ENST00000339162 ATP10AO60312 1499 aa31.55■■■□□ 2.64
PDLIM2-203ENST00000339162 MROH1Q8NDA8 1641 aa31.55■■■□□ 2.64
PDLIM2-203ENST00000339162 UHRF1BP1Q6BDS2 1440 aa31.55■■■□□ 2.64
PDLIM2-203ENST00000339162 WASHC2AQ641Q2 1341 aa31.54■■■□□ 2.64
PDLIM2-203ENST00000339162 VWDEQ8N2E2 1590 aa31.53■■■□□ 2.64
PDLIM2-203ENST00000339162 PRDM15P57071 1507 aaPredicted RBP31.52■■■□□ 2.64
PDLIM2-203ENST00000339162 FRMPD1Q5SYB0 1578 aa31.52■■■□□ 2.64
PDLIM2-203ENST00000339162 ABCA6Q8N139 1617 aa31.51■■■□□ 2.64
PDLIM2-203ENST00000339162 C11orf95C9JLR9 678 aaPredicted RBP31.51■■■□□ 2.63
PDLIM2-203ENST00000339162 SPATA31E1Q6ZUB1 1445 aa31.51■■■□□ 2.63
PDLIM2-203ENST00000339162 GGT6Q6P531 493 aa31.49■■■□□ 2.63
PDLIM2-203ENST00000339162 TET3O43151 1660 aa31.49■■■□□ 2.63
PDLIM2-203ENST00000339162 TSPOAP1O95153 1857 aa31.48■■■□□ 2.63
PDLIM2-203ENST00000339162 RICTORQ6R327 1708 aa31.47■■■□□ 2.63
PDLIM2-203ENST00000339162 USP47Q96K76 1375 aa31.45■■■□□ 2.63
PDLIM2-203ENST00000339162 RALGAPBQ86X10 1494 aa31.45■■■□□ 2.62
PDLIM2-203ENST00000339162 CARD11Q9BXL7 1154 aa31.44■■■□□ 2.62
PDLIM2-203ENST00000339162 PTPRTO14522 1441 aa31.43■■■□□ 2.62
PDLIM2-203ENST00000339162 YEATS2Q9ULM3 1422 aa31.42■■■□□ 2.62
PDLIM2-203ENST00000339162 TRPM2O94759 1503 aa31.42■■■□□ 2.62
PDLIM2-203ENST00000339162 SPHKAPQ2M3C7 1700 aa31.41■■■□□ 2.62
PDLIM2-203ENST00000339162 DIP2CQ9Y2E4 1556 aa31.4■■■□□ 2.62
PDLIM2-203ENST00000339162 PRAG1Q86YV5 1406 aa31.4■■■□□ 2.62
PDLIM2-203ENST00000339162 RNF17Q9BXT8 1623 aaKnown RBP31.4■■■□□ 2.62
PDLIM2-203ENST00000339162 PPRC1Q5VV67 1664 aaKnown RBP31.38■■■□□ 2.61
PDLIM2-203ENST00000339162 CCDC7Q96M83 1385 aa31.38■■■□□ 2.61
PDLIM2-203ENST00000339162 CEP152O94986 1710 aa31.37■■■□□ 2.61
PDLIM2-203ENST00000339162 CENPBP07199 599 aaPredicted RBP31.37■■■□□ 2.61
PDLIM2-203ENST00000339162 ROCK2O75116 1388 aaKnown RBP31.37■■■□□ 2.61
PDLIM2-203ENST00000339162 CLTCL1P53675 1640 aa31.36■■■□□ 2.61
PDLIM2-203ENST00000339162 EFCAB6Q5THR3 1501 aa31.36■■■□□ 2.61
PDLIM2-203ENST00000339162 NBPF1Q3BBV0 1214 aa31.34■■■□□ 2.61
PDLIM2-203ENST00000339162 ANP32CO43423 234 aa31.34■■■□□ 2.61
PDLIM2-203ENST00000339162 KIF7Q2M1P5 1343 aa31.34■■■□□ 2.61
PDLIM2-203ENST00000339162 WASHC2CQ9Y4E1 1318 aa31.33■■■□□ 2.61
PDLIM2-203ENST00000339162 UGGT1Q9NYU2 1555 aa31.33■■■□□ 2.61
PDLIM2-203ENST00000339162 LMTK2Q8IWU2 1503 aa31.31■■■□□ 2.6
PDLIM2-203ENST00000339162 TRPM1Q7Z4N2 1603 aa31.29■■■□□ 2.6
PDLIM2-203ENST00000339162 ST20-MTHFSA0A0A6YYL1 179 aa31.28■■■□□ 2.6
PDLIM2-203ENST00000339162 BCORL1Q5H9F3 1711 aa31.27■■■□□ 2.6
PDLIM2-203ENST00000339162 KIF13AQ9H1H9 1805 aa31.27■■■□□ 2.6
PDLIM2-203ENST00000339162 POLR3GLQ9BT43 218 aa31.26■■■□□ 2.6
PDLIM2-203ENST00000339162 NPATQ14207 1427 aa31.26■■■□□ 2.59
PDLIM2-203ENST00000339162 ABCC3O15438 1527 aa31.24■■■□□ 2.59
PDLIM2-203ENST00000339162 CFAP65Q6ZU64 1925 aaKnown RBP31.24■■■□□ 2.59
PDLIM2-203ENST00000339162 ZMYM4Q5VZL5 1548 aa31.22■■■□□ 2.59
PDLIM2-203ENST00000339162 CNTLNQ9NXG0 1405 aa31.22■■■□□ 2.59
PDLIM2-203ENST00000339162 POLR1AO95602 1720 aaPredicted RBP31.18■■■□□ 2.58
PDLIM2-203ENST00000339162 COL17A1Q9UMD9 1497 aaPredicted RBP31.18■■■□□ 2.58
PDLIM2-203ENST00000339162 GPRASP1Q5JY77 1395 aa31.17■■■□□ 2.58
PDLIM2-203ENST00000339162 CHGAP10645 457 aaKnown RBP31.16■■■□□ 2.58
PDLIM2-203ENST00000339162 CAMSAP1Q5T5Y3 1602 aa31.14■■■□□ 2.58
PDLIM2-203ENST00000339162 MADDQ8WXG6 1647 aa31.13■■■□□ 2.57
PDLIM2-203ENST00000339162 CCER2I3L3R5 266 aa31.11■■■□□ 2.57
PDLIM2-203ENST00000339162 KIF1BO60333 1816 aa31.11■■■□□ 2.57
PDLIM2-203ENST00000339162 MROH2AA6NES4 1674 aa31.08■■■□□ 2.57
PDLIM2-203ENST00000339162 SIGLEC1Q9BZZ2 1709 aa31.08■■■□□ 2.57
PDLIM2-203ENST00000339162 STAC3Q96MF2 364 aa31.06■■■□□ 2.56
PDLIM2-203ENST00000339162 ADGRF5Q8IZF2 1346 aa31.06■■■□□ 2.56
PDLIM2-203ENST00000339162 NEURL4Q96JN8 1562 aa31.05■■■□□ 2.56
PDLIM2-203ENST00000339162 ARID4BQ4LE39 1312 aaPredicted RBP31.05■■■□□ 2.56
PDLIM2-203ENST00000339162 SCAF1Q9H7N4 1312 aaKnown RBP31.05■■■□□ 2.56
PDLIM2-203ENST00000339162 LAMC1P11047 1609 aa31.04■■■□□ 2.56
PDLIM2-203ENST00000339162 NOS1P29475 1434 aa31.03■■■□□ 2.56
PDLIM2-203ENST00000339162 ADGRB3O60242 1522 aa31.02■■■□□ 2.56
PDLIM2-203ENST00000339162 MLECQ14165 292 aa31.01■■■□□ 2.56
PDLIM2-203ENST00000339162 ZC3H13Q5T200 1668 aaKnown RBP31.01■■■□□ 2.55
PDLIM2-203ENST00000339162 CNGB1Q14028 1251 aaPredicted RBP31.01■■■□□ 2.55
PDLIM2-203ENST00000339162 ARHGAP31Q2M1Z3 1444 aa31■■■□□ 2.55
PDLIM2-203ENST00000339162 CFAP70Q5T0N1 1121 aa31■■■□□ 2.55
PDLIM2-203ENST00000339162 TESK2Q96S53 571 aa31■■■□□ 2.55
PDLIM2-203ENST00000339162 PRKRIP1Q9H875 184 aaPredicted RBP30.99■■■□□ 2.55
PDLIM2-203ENST00000339162 SYNMO15061 1565 aa30.99■■■□□ 2.55
PDLIM2-203ENST00000339162 MYOM2P54296 1465 aa30.97■■■□□ 2.55
PDLIM2-203ENST00000339162 FBXO31Q5XUX0 539 aaPredicted RBP30.96■■■□□ 2.55
PDLIM2-203ENST00000339162 REREQ9P2R6 1566 aa30.96■■■□□ 2.55
PDLIM2-203ENST00000339162 IDI1Q13907 227 aa30.95■■■□□ 2.55
Retrieved 100 of 20,778 RNA–protein pairs in 11.6 ms