RNA–Protein interactions for RNA: ENST00000337331.9

NPHP3-201, Transcript of nephrocystin 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene NPHP3, Length 4,362 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP3-201ENST00000337331 CENPQQ7L2Z9 268 aaPredicted RBP20.17■□□□□ 0.82
NPHP3-201ENST00000337331 CCDC146Q8IYE0 955 aa20.16■□□□□ 0.82
NPHP3-201ENST00000337331 CLUAP1Q96AJ1 413 aa20.16■□□□□ 0.82
NPHP3-201ENST00000337331 PDCL3Q9H2J4 239 aa20.15■□□□□ 0.82
NPHP3-201ENST00000337331 KIF3BO15066 747 aa20.15■□□□□ 0.82
NPHP3-201ENST00000337331 OS9Q13438 667 aaPredicted RBP20.15■□□□□ 0.82
NPHP3-201ENST00000337331 GBP4Q96PP9 640 aa20.15■□□□□ 0.82
NPHP3-201ENST00000337331 IPO8O15397 1037 aaKnown RBP20.14■□□□□ 0.82
NPHP3-201ENST00000337331 APBB1O00213 710 aa20.14■□□□□ 0.81
NPHP3-201ENST00000337331 ZRSR1Q15695 479 aaKnown RBP20.14■□□□□ 0.81
NPHP3-201ENST00000337331 RWDD1Q9H446 243 aaPredicted RBP20.14■□□□□ 0.81
NPHP3-201ENST00000337331 CFTRP13569 1480 aa20.12■□□□□ 0.81
NPHP3-201ENST00000337331 CCDC18Q5T9S5 1454 aa20.12■□□□□ 0.81
NPHP3-201ENST00000337331 ITPRIPQ8IWB1 547 aa20.12■□□□□ 0.81
NPHP3-201ENST00000337331 ZHX1Q9UKY1 873 aaPredicted RBP20.12■□□□□ 0.81
NPHP3-201ENST00000337331 PRDM10Q9NQV6 1147 aa20.12■□□□□ 0.81
NPHP3-201ENST00000337331 KCNJ4P48050 445 aa20.11■□□□□ 0.81
NPHP3-201ENST00000337331 PDZRN4Q6ZMN7 1036 aaPredicted RBP20.11■□□□□ 0.81
NPHP3-201ENST00000337331 TRAK2O60296 914 aa20.11■□□□□ 0.81
NPHP3-201ENST00000337331 JPH4Q96JJ6 628 aa20.11■□□□□ 0.81
NPHP3-201ENST00000337331 MAP7D2Q96T17 732 aa20.11■□□□□ 0.81
NPHP3-201ENST00000337331 HDGFL2Q7Z4V5 671 aaPredicted RBP20.1■□□□□ 0.81
NPHP3-201ENST00000337331 FOXD4L1Q9NU39 408 aa20.1■□□□□ 0.81
NPHP3-201ENST00000337331 MYBBP1AQ9BQG0 1328 aaKnown RBP20.1■□□□□ 0.81
NPHP3-201ENST00000337331 MFAP1P55081 439 aaKnown RBP20.1■□□□□ 0.81
NPHP3-201ENST00000337331 HAP1P54257 671 aaPredicted RBP20.09■□□□□ 0.81
NPHP3-201ENST00000337331 PANK3Q9H999 370 aa20.09■□□□□ 0.81
NPHP3-201ENST00000337331 KIF15Q9NS87 1388 aa20.09■□□□□ 0.81
NPHP3-201ENST00000337331 DDX11L8A8MPP1 907 aa20.08■□□□□ 0.8
NPHP3-201ENST00000337331 FGD1P98174 961 aa20.08■□□□□ 0.8
NPHP3-201ENST00000337331 RSPH4AQ5TD94 716 aa20.08■□□□□ 0.8
NPHP3-201ENST00000337331 CLCN1P35523 988 aa20.07■□□□□ 0.8
NPHP3-201ENST00000337331 IGF1RP08069 1367 aa20.07■□□□□ 0.8
NPHP3-201ENST00000337331 SMC4Q9NTJ3 1288 aa20.06■□□□□ 0.8
NPHP3-201ENST00000337331 TAOK2Q9UL54 1235 aa20.06■□□□□ 0.8
NPHP3-201ENST00000337331 SMG6Q86US8 1419 aaKnown RBP20.05■□□□□ 0.8
NPHP3-201ENST00000337331 CENPJQ9HC77 1338 aaPredicted RBP20.05■□□□□ 0.8
NPHP3-201ENST00000337331 FGD5Q6ZNL6 1462 aa20.04■□□□□ 0.8
NPHP3-201ENST00000337331 USP47Q96K76 1375 aa20.04■□□□□ 0.8
NPHP3-201ENST00000337331 PMFBP1Q8TBY8 1022 aa20.04■□□□□ 0.8
NPHP3-201ENST00000337331 PEG3Q9GZU2 1588 aa20.04■□□□□ 0.8
NPHP3-201ENST00000337331 PANK2Q9BZ23 570 aa20.04■□□□□ 0.8
NPHP3-201ENST00000337331 CNTLNQ9NXG0 1405 aa20.04■□□□□ 0.8
NPHP3-201ENST00000337331 SPAG9O60271 1321 aaKnown RBP20.03■□□□□ 0.8
NPHP3-201ENST00000337331 BBXQ8WY36 941 aaPredicted RBP20.03■□□□□ 0.8
NPHP3-201ENST00000337331 RTF1Q92541 710 aaKnown RBP20.03■□□□□ 0.8
NPHP3-201ENST00000337331 CDCA7LQ96GN5 454 aa20.03■□□□□ 0.8
NPHP3-201ENST00000337331 RAD54L2Q9Y4B4 1467 aa20.03■□□□□ 0.8
NPHP3-201ENST00000337331 GRPEL1Q9HAV7 217 aa20.03■□□□□ 0.8
NPHP3-201ENST00000337331 CHMP5Q9NZZ3 219 aa20.02■□□□□ 0.8
NPHP3-201ENST00000337331 PHLDB1Q86UU1 1377 aa20.02■□□□□ 0.8
NPHP3-201ENST00000337331 HDGFP51858 240 aaKnown RBP20.02■□□□□ 0.8
NPHP3-201ENST00000337331 CHAF1AQ13111 956 aaPredicted RBP20.01■□□□□ 0.79
NPHP3-201ENST00000337331 MAPK8IP2Q13387 824 aaPredicted RBP20.01■□□□□ 0.79
NPHP3-201ENST00000337331 NUTM2DQ5VT03 806 aaPredicted RBP20.01■□□□□ 0.79
NPHP3-201ENST00000337331 RRP7AQ9Y3A4 280 aaKnown RBP20.01■□□□□ 0.79
NPHP3-201ENST00000337331 EIF3AQ14152 1382 aaKnown RBP20.01■□□□□ 0.79
NPHP3-201ENST00000337331 TRAK1Q9UPV9 953 aa20.01■□□□□ 0.79
NPHP3-201ENST00000337331 CCDC7Q96M83 1385 aa20.01■□□□□ 0.79
NPHP3-201ENST00000337331 XRCC6P12956 609 aaKnown RBP eCLIP20■□□□□ 0.79
NPHP3-201ENST00000337331 ZNF771Q7L3S4 317 aaPredicted RBP20■□□□□ 0.79
NPHP3-201ENST00000337331 DDX49Q9Y6V7 483 aaKnown RBP20■□□□□ 0.79
NPHP3-201ENST00000337331 MCCP23508 829 aa19.99■□□□□ 0.79
NPHP3-201ENST00000337331 CCDC144AA2RUR9 1427 aa19.99■□□□□ 0.79
NPHP3-201ENST00000337331 GOLGA6L4A6NEF3 574 aa19.99■□□□□ 0.79
NPHP3-201ENST00000337331 KIAA2012Q0VF49 1180 aa19.99■□□□□ 0.79
NPHP3-201ENST00000337331 NAP1L2Q9ULW6 460 aaPredicted RBP19.99■□□□□ 0.79
NPHP3-201ENST00000337331 CALD1Q05682 793 aaKnown RBP19.99■□□□□ 0.79
NPHP3-201ENST00000337331 SYNJ1O43426 1573 aa19.98■□□□□ 0.79
NPHP3-201ENST00000337331 BCL2L13Q9BXK5 485 aa19.98■□□□□ 0.79
NPHP3-201ENST00000337331 CFAP44Q96MT7 982 aa19.97■□□□□ 0.79
NPHP3-201ENST00000337331 KIF7Q2M1P5 1343 aa19.97■□□□□ 0.79
NPHP3-201ENST00000337331 TNNT3P45378 269 aaPredicted RBP19.97■□□□□ 0.79
NPHP3-201ENST00000337331 KIF21BO75037 1637 aa19.96■□□□□ 0.79
NPHP3-201ENST00000337331 MTERF4Q7Z6M4 381 aaKnown RBP19.96■□□□□ 0.79
NPHP3-201ENST00000337331 TERF2IPQ9NYB0 399 aa19.96■□□□□ 0.79
NPHP3-201ENST00000337331 MCM4P33991 863 aa19.95■□□□□ 0.78
NPHP3-201ENST00000337331 NASPP49321 788 aaPredicted RBP19.95■□□□□ 0.78
NPHP3-201ENST00000337331 ZNF644Q9H582 1327 aaPredicted RBP19.95■□□□□ 0.78
NPHP3-201ENST00000337331 FGD6Q6ZV73 1430 aa19.94■□□□□ 0.78
NPHP3-201ENST00000337331 APAF1O14727 1248 aa19.93■□□□□ 0.78
NPHP3-201ENST00000337331 UQCRHLA0A096LP55 91 aa19.93■□□□□ 0.78
NPHP3-201ENST00000337331 UQCRHP07919 91 aa19.93■□□□□ 0.78
NPHP3-201ENST00000337331 PTMSP20962 102 aa19.93■□□□□ 0.78
NPHP3-201ENST00000337331 SKOR2Q2VWA4 1001 aaPredicted RBP19.91■□□□□ 0.78
NPHP3-201ENST00000337331 COG6Q9Y2V7 657 aa19.9■□□□□ 0.78
NPHP3-201ENST00000337331 UACAQ9BZF9 1416 aa19.9■□□□□ 0.78
NPHP3-201ENST00000337331 PNISRQ8TF01 805 aaKnown RBP19.89■□□□□ 0.77
NPHP3-201ENST00000337331 CSPP1Q1MSJ5 1256 aa19.88■□□□□ 0.77
NPHP3-201ENST00000337331 RRBP1Q9P2E9 1410 aaKnown RBP19.88■□□□□ 0.77
NPHP3-201ENST00000337331 CUX1P39880 1505 aa19.87■□□□□ 0.77
NPHP3-201ENST00000337331 ELL2O00472 640 aaPredicted RBP19.87■□□□□ 0.77
NPHP3-201ENST00000337331 E9PSI1 815 aa19.87■□□□□ 0.77
NPHP3-201ENST00000337331 SUGP2Q8IX01 1082 aaKnown RBP eCLIP19.87■□□□□ 0.77
NPHP3-201ENST00000337331 LRRC9Q6ZRR7 1453 aa19.87■□□□□ 0.77
NPHP3-201ENST00000337331 MYOM3Q5VTT5 1437 aa19.86■□□□□ 0.77
NPHP3-201ENST00000337331 STK31Q9BXU1 1019 aa19.86■□□□□ 0.77
NPHP3-201ENST00000337331 SLC4A10Q6U841 1118 aa19.86■□□□□ 0.77
NPHP3-201ENST00000337331 ZSCAN30Q86W11 494 aa19.85■□□□□ 0.77
NPHP3-201ENST00000337331 ARAP1Q96P48 1450 aa19.84■□□□□ 0.77
Retrieved 100 of 20,778 RNA–protein pairs in 87.7 ms