RNA–Protein interactions for RNA: ENST00000326956.11

SSBP3-201, Transcript of single stranded DNA binding protein 3, humanhuman

TSL 2

Gene SSBP3, Length 2,913 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SSBP3-201ENST00000326956 ARHGEF12Q9NZN5 1544 aa19.38■□□□□ 0.69
SSBP3-201ENST00000326956 ZNF608Q9ULD9 1512 aaPredicted RBP19.37■□□□□ 0.69
SSBP3-201ENST00000326956 PLB1Q6P1J6 1458 aa19.36■□□□□ 0.69
SSBP3-201ENST00000326956 IFT140Q96RY7 1462 aa19.36■□□□□ 0.69
SSBP3-201ENST00000326956 CHMP7Q8WUX9 453 aaPredicted RBP19.36■□□□□ 0.69
SSBP3-201ENST00000326956 C9orf84Q5VXU9 1444 aa19.35■□□□□ 0.69
SSBP3-201ENST00000326956 GRIN2AQ12879 1464 aa19.35■□□□□ 0.69
SSBP3-201ENST00000326956 MS4A1P11836 297 aa19.35■□□□□ 0.69
SSBP3-201ENST00000326956 FBLN2P98095 1184 aa19.35■□□□□ 0.69
SSBP3-201ENST00000326956 CROCC2H7BZ55 1655 aa19.33■□□□□ 0.69
SSBP3-201ENST00000326956 LAS1LQ9Y4W2 734 aaKnown RBP19.33■□□□□ 0.68
SSBP3-201ENST00000326956 CARMIL2Q6F5E8 1435 aa19.32■□□□□ 0.68
SSBP3-201ENST00000326956 BACH2Q9BYV9 841 aa19.31■□□□□ 0.68
SSBP3-201ENST00000326956 NEFMP07197 916 aa19.31■□□□□ 0.68
SSBP3-201ENST00000326956 RGL3Q3MIN7 710 aa19.3■□□□□ 0.68
SSBP3-201ENST00000326956 CC2D1BQ5T0F9 858 aaKnown RBP19.3■□□□□ 0.68
SSBP3-201ENST00000326956 CDCA7LQ96GN5 454 aa19.3■□□□□ 0.68
SSBP3-201ENST00000326956 PPM1GO15355 546 aaPredicted RBP19.28■□□□□ 0.68
SSBP3-201ENST00000326956 PARD3Q8TEW0 1356 aa19.28■□□□□ 0.68
SSBP3-201ENST00000326956 HNRNPMP52272 730 aaKnown RBP eCLIP19.28■□□□□ 0.681e-6■■■■□ 23.1
SSBP3-201ENST00000326956 ADCY10Q96PN6 1610 aa19.28■□□□□ 0.68
SSBP3-201ENST00000326956 SHANK2Q9UPX8 1470 aa19.27■□□□□ 0.68
SSBP3-201ENST00000326956 PLIN1O60240 522 aa19.27■□□□□ 0.68
SSBP3-201ENST00000326956 USP35Q9P2H5 1018 aa19.27■□□□□ 0.68
SSBP3-201ENST00000326956 DDRGK1Q96HY6 314 aa19.26■□□□□ 0.67
SSBP3-201ENST00000326956 JPH4Q96JJ6 628 aa19.26■□□□□ 0.67
SSBP3-201ENST00000326956 CCDC144AA2RUR9 1427 aa19.25■□□□□ 0.67
SSBP3-201ENST00000326956 CRBNQ96SW2 442 aa19.24■□□□□ 0.67
SSBP3-201ENST00000326956 WASHC2CQ9Y4E1 1318 aa19.24■□□□□ 0.67
SSBP3-201ENST00000326956 DAXXQ9UER7 740 aaPredicted RBP19.23■□□□□ 0.67
SSBP3-201ENST00000326956 CEP170Q5SW79 1584 aa19.23■□□□□ 0.67
SSBP3-201ENST00000326956 NBPF1Q3BBV0 1214 aa19.23■□□□□ 0.67
SSBP3-201ENST00000326956 KDM5DQ9BY66 1539 aa19.22■□□□□ 0.67
SSBP3-201ENST00000326956 PER1O15534 1290 aaPredicted RBP19.22■□□□□ 0.67
SSBP3-201ENST00000326956 MAGI1Q96QZ7 1491 aaPredicted RBP19.22■□□□□ 0.67
SSBP3-201ENST00000326956 GRWD1Q9BQ67 446 aaKnown RBP eCLIP19.21■□□□□ 0.67
SSBP3-201ENST00000326956 PANK3Q9H999 370 aa19.21■□□□□ 0.67
SSBP3-201ENST00000326956 E9PCH4 1651 aa19.21■□□□□ 0.67
SSBP3-201ENST00000326956 PRAG1Q86YV5 1406 aa19.2■□□□□ 0.66
SSBP3-201ENST00000326956 TMF1P82094 1093 aa19.2■□□□□ 0.66
SSBP3-201ENST00000326956 CDC42BPAQ5VT25 1732 aa19.19■□□□□ 0.66
SSBP3-201ENST00000326956 PTPRGP23470 1445 aa19.19■□□□□ 0.66
SSBP3-201ENST00000326956 EIF4G3O43432 1585 aaKnown RBP19.18■□□□□ 0.66
SSBP3-201ENST00000326956 ABCC10Q5T3U5 1492 aa19.17■□□□□ 0.66
SSBP3-201ENST00000326956 ERCC6Q03468 1493 aa19.16■□□□□ 0.66
SSBP3-201ENST00000326956 FAM135AQ9P2D6 1515 aa19.16■□□□□ 0.66
SSBP3-201ENST00000326956 RSPH4AQ5TD94 716 aa19.16■□□□□ 0.66
SSBP3-201ENST00000326956 WDR43Q15061 677 aaKnown RBP eCLIP19.15■□□□□ 0.66
SSBP3-201ENST00000326956 SYNJ2O15056 1496 aa19.15■□□□□ 0.66
SSBP3-201ENST00000326956 ATP10BO94823 1461 aa19.14■□□□□ 0.66
SSBP3-201ENST00000326956 INSRP06213 1382 aa19.14■□□□□ 0.65
SSBP3-201ENST00000326956 DISP3Q9P2K9 1392 aa19.14■□□□□ 0.65
SSBP3-201ENST00000326956 PLEKHH2Q8IVE3 1493 aa19.14■□□□□ 0.65
SSBP3-201ENST00000326956 SKAP1Q86WV1 359 aa19.14■□□□□ 0.65
SSBP3-201ENST00000326956 BLMP54132 1417 aaPredicted RBP19.13■□□□□ 0.65
SSBP3-201ENST00000326956 COL17A1Q9UMD9 1497 aaPredicted RBP19.13■□□□□ 0.65
SSBP3-201ENST00000326956 GOLGA6L2Q8N9W4 650 aaPredicted RBP19.13■□□□□ 0.65
SSBP3-201ENST00000326956 CCDC141Q6ZP82 1450 aa19.13■□□□□ 0.65
SSBP3-201ENST00000326956 TRPM1Q7Z4N2 1603 aa19.13■□□□□ 0.65
SSBP3-201ENST00000326956 TESK2Q96S53 571 aa19.12■□□□□ 0.65
SSBP3-201ENST00000326956 ERBINQ96RT1 1412 aa19.12■□□□□ 0.65
SSBP3-201ENST00000326956 IL27Q8NEV9 243 aa19.12■□□□□ 0.65
SSBP3-201ENST00000326956 GPRASP1Q5JY77 1395 aa19.11■□□□□ 0.65
SSBP3-201ENST00000326956 KNSTRNQ9Y448 316 aa19.11■□□□□ 0.65
SSBP3-201ENST00000326956 ADAMTS8Q9UP79 889 aa19.11■□□□□ 0.65
SSBP3-201ENST00000326956 CENPQQ7L2Z9 268 aaPredicted RBP19.11■□□□□ 0.65
SSBP3-201ENST00000326956 RTN4Q9NQC3 1192 aaKnown RBP19.1■□□□□ 0.65
SSBP3-201ENST00000326956 ARHGEF5Q12774 1597 aa19.1■□□□□ 0.65
SSBP3-201ENST00000326956 C20orf194Q5TEA3 1177 aa19.09■□□□□ 0.65
SSBP3-201ENST00000326956 ZMYM4Q5VZL5 1548 aa19.09■□□□□ 0.65
SSBP3-201ENST00000326956 A2MP01023 1474 aa19.07■□□□□ 0.64
SSBP3-201ENST00000326956 ABCA8O94911 1581 aa19.07■□□□□ 0.64
SSBP3-201ENST00000326956 GOLGA2Q08379 1002 aa19.06■□□□□ 0.64
SSBP3-201ENST00000326956 FAM161AQ3B820 660 aa19.05■□□□□ 0.64
SSBP3-201ENST00000326956 SLC4A3P48751 1232 aa19.05■□□□□ 0.64
SSBP3-201ENST00000326956 NUP160Q12769 1436 aa19.04■□□□□ 0.64
SSBP3-201ENST00000326956 NFKBIBQ15653 356 aa19.04■□□□□ 0.64
SSBP3-201ENST00000326956 PRDM15P57071 1507 aaPredicted RBP19.03■□□□□ 0.64
SSBP3-201ENST00000326956 PPP2R1AP30153 589 aa19.03■□□□□ 0.64
SSBP3-201ENST00000326956 GSE1Q14687 1217 aa19.03■□□□□ 0.64
SSBP3-201ENST00000326956 KDM2BQ8NHM5 1336 aa19.03■□□□□ 0.64
SSBP3-201ENST00000326956 RGS3P49796 1198 aa19.02■□□□□ 0.64
SSBP3-201ENST00000326956 CDCA8Q53HL2 280 aa19.02■□□□□ 0.64
SSBP3-201ENST00000326956 DUSP27Q5VZP5 1158 aa19.02■□□□□ 0.64
SSBP3-201ENST00000326956 EIF2AK4Q9P2K8 1649 aaKnown RBP19.02■□□□□ 0.64
SSBP3-201ENST00000326956 PLA2R1Q13018 1463 aa19.01■□□□□ 0.63
SSBP3-201ENST00000326956 LAMC1P11047 1609 aa19■□□□□ 0.63
SSBP3-201ENST00000326956 SAMD9LQ8IVG5 1584 aa19■□□□□ 0.63
SSBP3-201ENST00000326956 PLEKHH1Q9ULM0 1364 aa18.99■□□□□ 0.63
SSBP3-201ENST00000326956 ANO8Q9HCE9 1232 aaPredicted RBP18.99■□□□□ 0.63
SSBP3-201ENST00000326956 ARHGAP5Q13017 1502 aa18.97■□□□□ 0.63
SSBP3-201ENST00000326956 SYCP2Q9BX26 1530 aa18.96■□□□□ 0.63
SSBP3-201ENST00000326956 C8orf34Q49A92 452 aa18.95■□□□□ 0.62
SSBP3-201ENST00000326956 CCDC146Q8IYE0 955 aa18.94■□□□□ 0.62
SSBP3-201ENST00000326956 PREX2Q70Z35 1606 aa18.94■□□□□ 0.62
SSBP3-201ENST00000326956 SLFN5Q08AF3 891 aa18.94■□□□□ 0.62
SSBP3-201ENST00000326956 UNC13BO14795 1591 aa18.94■□□□□ 0.62
SSBP3-201ENST00000326956 CDC42BPBQ9Y5S2 1711 aa18.93■□□□□ 0.62
SSBP3-201ENST00000326956 AMER1Q5JTC6 1135 aaPredicted RBP18.93■□□□□ 0.62
SSBP3-201ENST00000326956 MAGI2Q86UL8 1455 aa18.92■□□□□ 0.62
Retrieved 100 of 20,778 RNA–protein pairs in 32 ms