RNA–Protein interactions for RNA: ENST00000326004.4

HMGB1-201, Transcript of high mobility group box 1, humanhuman

TSL 3 BASIC

Gene HMGB1, Length 821 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-201ENST00000326004 MAP2K5Q13163 448 aa7.38□□□□□ -1.23
HMGB1-201ENST00000326004 C6orf132Q5T0Z8 1188 aa7.37□□□□□ -1.23
HMGB1-201ENST00000326004 CDHR5Q9HBB8 845 aa7.37□□□□□ -1.23
HMGB1-201ENST00000326004 TSR1Q2NL82 804 aaKnown RBP7.36□□□□□ -1.23
HMGB1-201ENST00000326004 ADAM33Q9BZ11 813 aa7.36□□□□□ -1.23
HMGB1-201ENST00000326004 NPDC1Q9NQX5 325 aaPredicted RBP7.36□□□□□ -1.23
HMGB1-201ENST00000326004 BCL2L12Q9HB09 334 aa7.35□□□□□ -1.23
HMGB1-201ENST00000326004 IRF6O14896 467 aa7.34□□□□□ -1.23
HMGB1-201ENST00000326004 RBM27Q9P2N5 1060 aaKnown RBP7.34□□□□□ -1.23
HMGB1-201ENST00000326004 TRIM66O15016 1216 aa7.33□□□□□ -1.24
HMGB1-201ENST00000326004 FECHP22830 423 aa7.33□□□□□ -1.24
HMGB1-201ENST00000326004 ST18O60284 1047 aa7.32□□□□□ -1.24
HMGB1-201ENST00000326004 PTPREP23469 700 aa7.32□□□□□ -1.24
HMGB1-201ENST00000326004 BRPF1P55201 1214 aaPredicted RBP7.32□□□□□ -1.24
HMGB1-201ENST00000326004 NEUROD2Q15784 382 aa7.32□□□□□ -1.24
HMGB1-201ENST00000326004 CCDC102AQ96A19 550 aa7.32□□□□□ -1.24
HMGB1-201ENST00000326004 PPP1R3GB7ZBB8 358 aa7.3□□□□□ -1.24
HMGB1-201ENST00000326004 KCNH8Q96L42 1107 aa7.3□□□□□ -1.24
HMGB1-201ENST00000326004 ERBB3P21860 1342 aa7.29□□□□□ -1.24
HMGB1-201ENST00000326004 EMP3P54852 163 aa7.29□□□□□ -1.24
HMGB1-201ENST00000326004 PRSS12P56730 875 aa7.29□□□□□ -1.24
HMGB1-201ENST00000326004 PDE4DQ08499 809 aa7.29□□□□□ -1.24
HMGB1-201ENST00000326004 AMHR2Q16671 573 aa7.29□□□□□ -1.24
HMGB1-201ENST00000326004 PADI6Q6TGC4 694 aa7.28□□□□□ -1.24
HMGB1-201ENST00000326004 TTC13Q8NBP0 860 aa7.28□□□□□ -1.24
HMGB1-201ENST00000326004 CDCA7LQ96GN5 454 aa7.28□□□□□ -1.24
HMGB1-201ENST00000326004 OATP04181 439 aa7.27□□□□□ -1.25
HMGB1-201ENST00000326004 VARS2Q5ST30 1063 aaKnown RBP7.27□□□□□ -1.25
HMGB1-201ENST00000326004 DAXXQ9UER7 740 aaPredicted RBP7.27□□□□□ -1.25
HMGB1-201ENST00000326004 COL9A1P20849 921 aa7.26□□□□□ -1.25
HMGB1-201ENST00000326004 TMEM132AQ24JP5 1023 aa7.26□□□□□ -1.25
HMGB1-201ENST00000326004 FAM163AQ96GL9 167 aaPredicted RBP7.26□□□□□ -1.25
HMGB1-201ENST00000326004 ONECUT3O60422 494 aaPredicted RBP7.25□□□□□ -1.25
HMGB1-201ENST00000326004 KCNK17Q96T54 332 aa7.25□□□□□ -1.25
HMGB1-201ENST00000326004 ADGRG1Q9Y653 693 aa7.25□□□□□ -1.25
HMGB1-201ENST00000326004 TRIM6-TRIM34B2RNG4 842 aa7.24□□□□□ -1.25
HMGB1-201ENST00000326004 PBX2P40425 430 aa7.24□□□□□ -1.25
HMGB1-201ENST00000326004 RBM46Q8TBY0 533 aaKnown RBP7.24□□□□□ -1.25
HMGB1-201ENST00000326004 MARVELD3Q96A59 401 aa7.24□□□□□ -1.25
HMGB1-201ENST00000326004 FAM205CA6NFA0 338 aa7.23□□□□□ -1.25
HMGB1-201ENST00000326004 ARHGAP33O14559 1287 aa7.23□□□□□ -1.25
HMGB1-201ENST00000326004 METTL3Q86U44 580 aaKnown RBP7.23□□□□□ -1.25
HMGB1-201ENST00000326004 ZNF687Q8N1G0 1237 aa7.23□□□□□ -1.25
HMGB1-201ENST00000326004 PXYLP1Q8TE99 480 aa7.23□□□□□ -1.25
HMGB1-201ENST00000326004 KDM4CQ9H3R0 1056 aa7.23□□□□□ -1.25
HMGB1-201ENST00000326004 NBPF26B4DH59 902 aa7.22□□□□□ -1.25
HMGB1-201ENST00000326004 TTLL12Q14166 644 aaPredicted RBP7.22□□□□□ -1.25
HMGB1-201ENST00000326004 PACS2Q86VP3 889 aa7.22□□□□□ -1.25
HMGB1-201ENST00000326004 PARP9Q8IXQ6 854 aa7.22□□□□□ -1.25
HMGB1-201ENST00000326004 GPBP1L1Q9HC44 474 aaPredicted RBP7.22□□□□□ -1.25
HMGB1-201ENST00000326004 TSKSQ9UJT2 592 aa7.22□□□□□ -1.25
HMGB1-201ENST00000326004 CLCN1P35523 988 aa7.21□□□□□ -1.26
HMGB1-201ENST00000326004 ZBED2Q9BTP6 218 aa7.21□□□□□ -1.26
HMGB1-201ENST00000326004 SLC4A5Q9BY07 1137 aa7.21□□□□□ -1.26
HMGB1-201ENST00000326004 FAM198AQ9UFP1 575 aa7.21□□□□□ -1.26
HMGB1-201ENST00000326004 PSEN2P49810 448 aa7.2□□□□□ -1.26
HMGB1-201ENST00000326004 FAM161AQ3B820 660 aa7.2□□□□□ -1.26
HMGB1-201ENST00000326004 POTEEQ6S8J3 1075 aa7.2□□□□□ -1.26
HMGB1-201ENST00000326004 HS3ST6Q96QI5 342 aa7.2□□□□□ -1.26
HMGB1-201ENST00000326004 GPCPD1Q9NPB8 672 aa7.2□□□□□ -1.26
HMGB1-201ENST00000326004 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP7.19□□□□□ -1.26
HMGB1-201ENST00000326004 PROX2Q3B8N5 592 aa7.19□□□□□ -1.26
HMGB1-201ENST00000326004 LCE2DQ5TA82 110 aaPredicted RBP7.19□□□□□ -1.26
HMGB1-201ENST00000326004 GIGYF2Q6Y7W6 1299 aaKnown RBP7.19□□□□□ -1.26
HMGB1-201ENST00000326004 TATDN2Q93075 761 aa7.19□□□□□ -1.26
HMGB1-201ENST00000326004 PHOX2BQ99453 314 aa7.19□□□□□ -1.26
HMGB1-201ENST00000326004 TMUB1Q9BVT8 246 aa7.19□□□□□ -1.26
HMGB1-201ENST00000326004 PNMA3Q9UL41 463 aa7.19□□□□□ -1.26
HMGB1-201ENST00000326004 MDM2Q00987 491 aaPredicted RBP7.18□□□□□ -1.26
HMGB1-201ENST00000326004 NUDT18Q6ZVK8 323 aa7.18□□□□□ -1.26
HMGB1-201ENST00000326004 DDRGK1Q96HY6 314 aa7.18□□□□□ -1.26
HMGB1-201ENST00000326004 EYA1Q99502 592 aa7.18□□□□□ -1.26
HMGB1-201ENST00000326004 RABGEF1Q9UJ41 708 aa7.18□□□□□ -1.26
HMGB1-201ENST00000326004 DNAJB2P25686 324 aa7.17□□□□□ -1.26
HMGB1-201ENST00000326004 AXIN2Q9Y2T1 843 aa7.17□□□□□ -1.26
HMGB1-201ENST00000326004 POTEB3A0JP26 581 aa7.16□□□□□ -1.26
HMGB1-201ENST00000326004 RCCD1A6NED2 376 aa7.16□□□□□ -1.26
HMGB1-201ENST00000326004 DMRTA1Q5VZB9 504 aa7.16□□□□□ -1.26
HMGB1-201ENST00000326004 POTEBQ6S5H4 581 aa7.16□□□□□ -1.26
HMGB1-201ENST00000326004 REPIN1Q9BWE0 567 aaKnown RBP7.16□□□□□ -1.26
HMGB1-201ENST00000326004 KIAA1468Q9P260 1216 aa7.16□□□□□ -1.26
HMGB1-201ENST00000326004 TK2O00142 265 aa7.15□□□□□ -1.26
HMGB1-201ENST00000326004 VPS9D1Q9Y2B5 631 aa7.15□□□□□ -1.26
HMGB1-201ENST00000326004 SSTR3P32745 418 aaPredicted RBP7.14□□□□□ -1.27
HMGB1-201ENST00000326004 IL27Q8NEV9 243 aa7.14□□□□□ -1.27
HMGB1-201ENST00000326004 FAM117AQ9C073 453 aa7.14□□□□□ -1.27
HMGB1-201ENST00000326004 FAM217BQ9NTX9 383 aaPredicted RBP7.14□□□□□ -1.27
HMGB1-201ENST00000326004 C3orf80F5H4A9 247 aa7.13□□□□□ -1.27
HMGB1-201ENST00000326004 MS4A1P11836 297 aa7.13□□□□□ -1.27
HMGB1-201ENST00000326004 NBPF3Q9H094 633 aa7.13□□□□□ -1.27
HMGB1-201ENST00000326004 TMEM134Q9H6X4 195 aa7.13□□□□□ -1.27
HMGB1-201ENST00000326004 SMAPO00193 183 aa7.12□□□□□ -1.27
HMGB1-201ENST00000326004 LSM11P83369 360 aaKnown RBP eCLIP7.12□□□□□ -1.27
HMGB1-201ENST00000326004 LAPTM4BQ86VI4 370 aa7.12□□□□□ -1.27
HMGB1-201ENST00000326004 SULF1Q8IWU6 871 aa7.12□□□□□ -1.27
HMGB1-201ENST00000326004 NLRP7Q8WX94 980 aa7.12□□□□□ -1.27
HMGB1-201ENST00000326004 PLEKHG3A1L390 1219 aa7.11□□□□□ -1.27
HMGB1-201ENST00000326004 FAM98CQ17RN3 349 aaKnown RBP7.11□□□□□ -1.27
HMGB1-201ENST00000326004 BHMG1C9JSJ3 638 aaPredicted RBP7.1□□□□□ -1.27
HMGB1-201ENST00000326004 HDGFP51858 240 aaKnown RBP7.1□□□□□ -1.27
Retrieved 100 of 20,778 RNA–protein pairs in 25.6 ms