RNA–Protein interactions for RNA: ENST00000325110.10

HMGCS1-201, Transcript of 3-hydroxy-3-methylglutaryl-CoA synthase 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HMGCS1, Length 3,506 nt, Biotype protein coding, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGCS1-201ENST00000325110 LAS1LQ9Y4W2 734 aaKnown RBP17.1■□□□□ 0.33
HMGCS1-201ENST00000325110 PTPRGP23470 1445 aa17.09■□□□□ 0.33
HMGCS1-201ENST00000325110 WDR43Q15061 677 aaKnown RBP eCLIP17.09■□□□□ 0.331e-23■□□□□ 9.7
HMGCS1-201ENST00000325110 SKAP1Q86WV1 359 aa17.08■□□□□ 0.32
HMGCS1-201ENST00000325110 TMF1P82094 1093 aa17.07■□□□□ 0.32
HMGCS1-201ENST00000325110 ARID4BQ4LE39 1312 aaPredicted RBP17.07■□□□□ 0.32
HMGCS1-201ENST00000325110 KNSTRNQ9Y448 316 aa17.06■□□□□ 0.32
HMGCS1-201ENST00000325110 IPO9Q96P70 1041 aaKnown RBP17.05■□□□□ 0.32
HMGCS1-201ENST00000325110 MAGI1Q96QZ7 1491 aaPredicted RBP17.05■□□□□ 0.32
HMGCS1-201ENST00000325110 SENP3Q9H4L4 574 aaPredicted RBP17.05■□□□□ 0.32
HMGCS1-201ENST00000325110 DAXXQ9UER7 740 aaPredicted RBP17.05■□□□□ 0.32
HMGCS1-201ENST00000325110 BRD4O60885 1362 aaPredicted RBP17.04■□□□□ 0.32
HMGCS1-201ENST00000325110 CHGAP10645 457 aaKnown RBP17.04■□□□□ 0.32
HMGCS1-201ENST00000325110 SYNJ2O15056 1496 aa17.03■□□□□ 0.32
HMGCS1-201ENST00000325110 EIF4G3O43432 1585 aaKnown RBP17.03■□□□□ 0.32
HMGCS1-201ENST00000325110 ATP10BO94823 1461 aa17.02■□□□□ 0.32
HMGCS1-201ENST00000325110 BCORL1Q5H9F3 1711 aa17.01■□□□□ 0.31
HMGCS1-201ENST00000325110 CRBNQ96SW2 442 aa17■□□□□ 0.31
HMGCS1-201ENST00000325110 RALGAPBQ86X10 1494 aa16.99■□□□□ 0.31
HMGCS1-201ENST00000325110 CCDC146Q8IYE0 955 aa16.99■□□□□ 0.31
HMGCS1-201ENST00000325110 PDE4AP27815 886 aa16.98■□□□□ 0.31
HMGCS1-201ENST00000325110 ITSN2Q9NZM3 1697 aa16.97■□□□□ 0.31
HMGCS1-201ENST00000325110 RGS3P49796 1198 aa16.97■□□□□ 0.31
HMGCS1-201ENST00000325110 CEP170Q5SW79 1584 aa16.97■□□□□ 0.31
HMGCS1-201ENST00000325110 ADAMTS8Q9UP79 889 aa16.97■□□□□ 0.31
HMGCS1-201ENST00000325110 TNNT2P45379 298 aaPredicted RBP16.96■□□□□ 0.31
HMGCS1-201ENST00000325110 RSPH4AQ5TD94 716 aa16.96■□□□□ 0.31
HMGCS1-201ENST00000325110 ADGRL2O95490 1459 aa16.96■□□□□ 0.3
HMGCS1-201ENST00000325110 DISP3Q9P2K9 1392 aa16.95■□□□□ 0.3
HMGCS1-201ENST00000325110 TCERG1O14776 1098 aaKnown RBP16.95■□□□□ 0.3
HMGCS1-201ENST00000325110 CANXP27824 592 aaKnown RBP16.95■□□□□ 0.3
HMGCS1-201ENST00000325110 PDE3BQ13370 1112 aa16.95■□□□□ 0.3
HMGCS1-201ENST00000325110 NEUROD2Q15784 382 aa16.95■□□□□ 0.3
HMGCS1-201ENST00000325110 MBD5Q9P267 1494 aa16.95■□□□□ 0.3
HMGCS1-201ENST00000325110 ARHGAP5Q13017 1502 aa16.94■□□□□ 0.3
HMGCS1-201ENST00000325110 NEFMP07197 916 aa16.94■□□□□ 0.3
HMGCS1-201ENST00000325110 KDM5CP41229 1560 aa16.93■□□□□ 0.3
HMGCS1-201ENST00000325110 CCDC141Q6ZP82 1450 aa16.92■□□□□ 0.3
HMGCS1-201ENST00000325110 C20orf194Q5TEA3 1177 aa16.92■□□□□ 0.3
HMGCS1-201ENST00000325110 EFCAB2Q5VUJ9 269 aa16.92■□□□□ 0.3
HMGCS1-201ENST00000325110 AFAP1Q8N556 730 aa16.92■□□□□ 0.3
HMGCS1-201ENST00000325110 SLC4A3P48751 1232 aa16.91■□□□□ 0.3
HMGCS1-201ENST00000325110 RNF123Q5XPI4 1314 aa16.91■□□□□ 0.3
HMGCS1-201ENST00000325110 UHRF1BP1Q6BDS2 1440 aa16.91■□□□□ 0.3
HMGCS1-201ENST00000325110 PLEKHH2Q8IVE3 1493 aa16.91■□□□□ 0.3
HMGCS1-201ENST00000325110 PER1O15534 1290 aaPredicted RBP16.9■□□□□ 0.3
HMGCS1-201ENST00000325110 LRPPRCP42704 1394 aaKnown RBP16.89■□□□□ 0.29
HMGCS1-201ENST00000325110 ADGBQ8N7X0 1667 aa16.89■□□□□ 0.29
HMGCS1-201ENST00000325110 TESK2Q96S53 571 aa16.88■□□□□ 0.29
HMGCS1-201ENST00000325110 PRAG1Q86YV5 1406 aa16.88■□□□□ 0.29
HMGCS1-201ENST00000325110 SPAG9O60271 1321 aaKnown RBP16.88■□□□□ 0.29
HMGCS1-201ENST00000325110 FAM135AQ9P2D6 1515 aa16.88■□□□□ 0.29
HMGCS1-201ENST00000325110 ERBINQ96RT1 1412 aa16.88■□□□□ 0.29
HMGCS1-201ENST00000325110 KIF3BO15066 747 aa16.88■□□□□ 0.29
HMGCS1-201ENST00000325110 GOLGA6L2Q8N9W4 650 aaPredicted RBP16.87■□□□□ 0.29
HMGCS1-201ENST00000325110 RTN4Q9NQC3 1192 aaKnown RBP16.87■□□□□ 0.29
HMGCS1-201ENST00000325110 GOLGA2Q08379 1002 aa16.86■□□□□ 0.29
HMGCS1-201ENST00000325110 ABCC10Q5T3U5 1492 aa16.86■□□□□ 0.29
HMGCS1-201ENST00000325110 PARD3Q8TEW0 1356 aa16.86■□□□□ 0.29
HMGCS1-201ENST00000325110 PPP2R1AP30153 589 aa16.86■□□□□ 0.29
HMGCS1-201ENST00000325110 CDCA8Q53HL2 280 aa16.86■□□□□ 0.29
HMGCS1-201ENST00000325110 NUP160Q12769 1436 aa16.85■□□□□ 0.29
HMGCS1-201ENST00000325110 SYCP2Q9BX26 1530 aa16.85■□□□□ 0.29
HMGCS1-201ENST00000325110 APAF1O14727 1248 aa16.85■□□□□ 0.29
HMGCS1-201ENST00000325110 ARHGEF12Q9NZN5 1544 aa16.84■□□□□ 0.29
HMGCS1-201ENST00000325110 FRAT1Q92837 279 aaPredicted RBP16.84■□□□□ 0.29
HMGCS1-201ENST00000325110 BACH2Q9BYV9 841 aa16.83■□□□□ 0.29
HMGCS1-201ENST00000325110 SHANK2Q9UPX8 1470 aa16.82■□□□□ 0.28
HMGCS1-201ENST00000325110 A2MP01023 1474 aa16.81■□□□□ 0.28
HMGCS1-201ENST00000325110 CFAP70Q5T0N1 1121 aa16.81■□□□□ 0.28
HMGCS1-201ENST00000325110 CDC42BPAQ5VT25 1732 aa16.81■□□□□ 0.28
HMGCS1-201ENST00000325110 RRP7AQ9Y3A4 280 aaKnown RBP16.8■□□□□ 0.28
HMGCS1-201ENST00000325110 NUTM2DQ5VT03 806 aaPredicted RBP16.79■□□□□ 0.28
HMGCS1-201ENST00000325110 SAFB2Q14151 953 aaKnown RBP eCLIP16.77■□□□□ 0.28
HMGCS1-201ENST00000325110 WASHC2CQ9Y4E1 1318 aa16.77■□□□□ 0.28
HMGCS1-201ENST00000325110 TRAK1Q9UPV9 953 aa16.77■□□□□ 0.27
HMGCS1-201ENST00000325110 ABCA8O94911 1581 aa16.77■□□□□ 0.27
HMGCS1-201ENST00000325110 MS4A1P11836 297 aa16.76■□□□□ 0.27
HMGCS1-201ENST00000325110 DDRGK1Q96HY6 314 aa16.76■□□□□ 0.27
HMGCS1-201ENST00000325110 BCAR3O75815 825 aa16.76■□□□□ 0.27
HMGCS1-201ENST00000325110 GGT6Q6P531 493 aa16.75■□□□□ 0.27
HMGCS1-201ENST00000325110 CROCC2H7BZ55 1655 aa16.75■□□□□ 0.27
HMGCS1-201ENST00000325110 PLA2R1Q13018 1463 aa16.75■□□□□ 0.27
HMGCS1-201ENST00000325110 POLR1AO95602 1720 aaPredicted RBP16.75■□□□□ 0.27
HMGCS1-201ENST00000325110 BCL2L13Q9BXK5 485 aa16.75■□□□□ 0.27
HMGCS1-201ENST00000325110 PPM1GO15355 546 aaPredicted RBP16.74■□□□□ 0.27
HMGCS1-201ENST00000325110 SAMD9LQ8IVG5 1584 aa16.74■□□□□ 0.27
HMGCS1-201ENST00000325110 COL17A1Q9UMD9 1497 aaPredicted RBP16.74■□□□□ 0.27
HMGCS1-201ENST00000325110 DUSP27Q5VZP5 1158 aa16.74■□□□□ 0.27
HMGCS1-201ENST00000325110 KANK1Q14678 1352 aa16.73■□□□□ 0.27
HMGCS1-201ENST00000325110 PLEKHH1Q9ULM0 1364 aa16.73■□□□□ 0.27
HMGCS1-201ENST00000325110 MORC1Q86VD1 984 aa16.73■□□□□ 0.27
HMGCS1-201ENST00000325110 CENPQQ7L2Z9 268 aaPredicted RBP16.72■□□□□ 0.27
HMGCS1-201ENST00000325110 ADCY10Q96PN6 1610 aa16.72■□□□□ 0.27
HMGCS1-201ENST00000325110 KDM5DQ9BY66 1539 aa16.72■□□□□ 0.27
HMGCS1-201ENST00000325110 AMER1Q5JTC6 1135 aaPredicted RBP16.72■□□□□ 0.27
HMGCS1-201ENST00000325110 CLUAP1Q96AJ1 413 aa16.72■□□□□ 0.27
HMGCS1-201ENST00000325110 COG6Q9Y2V7 657 aa16.72■□□□□ 0.27
HMGCS1-201ENST00000325110 SPINK5Q9NQ38 1064 aaPredicted RBP16.7■□□□□ 0.26
HMGCS1-201ENST00000325110 TRAPPC8Q9Y2L5 1435 aa16.7■□□□□ 0.26
Retrieved 100 of 20,778 RNA–protein pairs in 38.4 ms