RNA–Protein interactions for RNA: ENST00000319854.7

SHROOM1-201, Transcript of shroom family member 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene SHROOM1, Length 3,190 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM1-201ENST00000319854 ROCK2O75116 1388 aaKnown RBP21.1■□□□□ 0.97
SHROOM1-201ENST00000319854 PLEKHH2Q8IVE3 1493 aa21.1■□□□□ 0.97
SHROOM1-201ENST00000319854 EFCAB2Q5VUJ9 269 aa21.1■□□□□ 0.97
SHROOM1-201ENST00000319854 PAK3O75914 559 aaPredicted RBP21.09■□□□□ 0.97
SHROOM1-201ENST00000319854 RSPH4AQ5TD94 716 aa21.09■□□□□ 0.97
SHROOM1-201ENST00000319854 CCDC144AA2RUR9 1427 aa21.08■□□□□ 0.97
SHROOM1-201ENST00000319854 FAM135AQ9P2D6 1515 aa21.06■□□□□ 0.96
SHROOM1-201ENST00000319854 ABCC2Q92887 1545 aa21.05■□□□□ 0.96
SHROOM1-201ENST00000319854 PREX2Q70Z35 1606 aa21.05■□□□□ 0.96
SHROOM1-201ENST00000319854 SALL2Q9Y467 1007 aaPredicted RBP21.04■□□□□ 0.96
SHROOM1-201ENST00000319854 ARHGEF12Q9NZN5 1544 aa21.03■□□□□ 0.96
SHROOM1-201ENST00000319854 BCORL1Q5H9F3 1711 aa21.03■□□□□ 0.96
SHROOM1-201ENST00000319854 ANO8Q9HCE9 1232 aaPredicted RBP21.03■□□□□ 0.96
SHROOM1-201ENST00000319854 TMC1Q8TDI8 760 aa21.02■□□□□ 0.96
SHROOM1-201ENST00000319854 NOP58Q9Y2X3 529 aaKnown RBP21.02■□□□□ 0.96
SHROOM1-201ENST00000319854 ERICH6BQ5W0A0 696 aa21.01■□□□□ 0.95
SHROOM1-201ENST00000319854 SPAG9O60271 1321 aaKnown RBP21.01■□□□□ 0.95
SHROOM1-201ENST00000319854 ARHGEF5Q12774 1597 aa21.01■□□□□ 0.95
SHROOM1-201ENST00000319854 TRAPPC8Q9Y2L5 1435 aa21.01■□□□□ 0.95
SHROOM1-201ENST00000319854 DHX29Q7Z478 1369 aaKnown RBP20.99■□□□□ 0.95
SHROOM1-201ENST00000319854 SHROOM2Q13796 1616 aa20.97■□□□□ 0.95
SHROOM1-201ENST00000319854 RALGAPBQ86X10 1494 aa20.96■□□□□ 0.95
SHROOM1-201ENST00000319854 PLCH2O75038 1416 aa20.95■□□□□ 0.95
SHROOM1-201ENST00000319854 PLA2R1Q13018 1463 aa20.95■□□□□ 0.94
SHROOM1-201ENST00000319854 KDM5CP41229 1560 aa20.95■□□□□ 0.94
SHROOM1-201ENST00000319854 CC2D1BQ5T0F9 858 aaKnown RBP20.94■□□□□ 0.94
SHROOM1-201ENST00000319854 KIF3BO15066 747 aa20.94■□□□□ 0.94
SHROOM1-201ENST00000319854 UHRF1BP1Q6BDS2 1440 aa20.93■□□□□ 0.94
SHROOM1-201ENST00000319854 ZCCHC11Q5TAX3 1644 aaKnown RBP20.93■□□□□ 0.94
SHROOM1-201ENST00000319854 MYO5CQ9NQX4 1742 aa20.93■□□□□ 0.94
SHROOM1-201ENST00000319854 KDM5DQ9BY66 1539 aa20.91■□□□□ 0.94
SHROOM1-201ENST00000319854 ZBED9Q6R2W3 1325 aa20.91■□□□□ 0.94
SHROOM1-201ENST00000319854 SENP3Q9H4L4 574 aaPredicted RBP20.89■□□□□ 0.93
SHROOM1-201ENST00000319854 PRAG1Q86YV5 1406 aa20.89■□□□□ 0.93
SHROOM1-201ENST00000319854 A2MP01023 1474 aa20.88■□□□□ 0.93
SHROOM1-201ENST00000319854 SCAPERQ9BY12 1400 aa20.86■□□□□ 0.93
SHROOM1-201ENST00000319854 CHGAP10645 457 aaKnown RBP20.85■□□□□ 0.93
SHROOM1-201ENST00000319854 PNISRQ8TF01 805 aaKnown RBP20.85■□□□□ 0.93
SHROOM1-201ENST00000319854 CLASP1Q7Z460 1538 aa20.85■□□□□ 0.93
SHROOM1-201ENST00000319854 DISP3Q9P2K9 1392 aa20.83■□□□□ 0.93
SHROOM1-201ENST00000319854 PANK3Q9H999 370 aa20.83■□□□□ 0.93
SHROOM1-201ENST00000319854 DUOX2Q9NRD8 1548 aa20.83■□□□□ 0.93
SHROOM1-201ENST00000319854 NPM1P06748 294 aaKnown RBP eCLIP20.83■□□□□ 0.92
SHROOM1-201ENST00000319854 ARID4BQ4LE39 1312 aaPredicted RBP20.82■□□□□ 0.92
SHROOM1-201ENST00000319854 IL27Q8NEV9 243 aa20.81■□□□□ 0.92
SHROOM1-201ENST00000319854 TESK2Q96S53 571 aa20.8■□□□□ 0.92
SHROOM1-201ENST00000319854 FANCAO15360 1455 aa20.8■□□□□ 0.92
SHROOM1-201ENST00000319854 IPO9Q96P70 1041 aaKnown RBP20.79■□□□□ 0.92
SHROOM1-201ENST00000319854 POLR1AO95602 1720 aaPredicted RBP20.79■□□□□ 0.92
SHROOM1-201ENST00000319854 ABCC1P33527 1531 aa20.79■□□□□ 0.92
SHROOM1-201ENST00000319854 MYBBP1AQ9BQG0 1328 aaKnown RBP20.78■□□□□ 0.92
SHROOM1-201ENST00000319854 GGT6Q6P531 493 aa20.78■□□□□ 0.92
SHROOM1-201ENST00000319854 ERBINQ96RT1 1412 aa20.77■□□□□ 0.92
SHROOM1-201ENST00000319854 TMF1P82094 1093 aa20.77■□□□□ 0.92
SHROOM1-201ENST00000319854 WDR7Q9Y4E6 1490 aa20.77■□□□□ 0.92
SHROOM1-201ENST00000319854 UNC13BO14795 1591 aa20.76■□□□□ 0.91
SHROOM1-201ENST00000319854 MAST1Q9Y2H9 1570 aa20.76■□□□□ 0.91
SHROOM1-201ENST00000319854 RTN4Q9NQC3 1192 aaKnown RBP20.76■□□□□ 0.91
SHROOM1-201ENST00000319854 UHRF1BP1LA0JNW5 1464 aa20.76■□□□□ 0.91
SHROOM1-201ENST00000319854 KTN1Q86UP2 1357 aaKnown RBP20.75■□□□□ 0.91
SHROOM1-201ENST00000319854 RALBP1Q15311 655 aa20.75■□□□□ 0.91
SHROOM1-201ENST00000319854 OSCARQ8IYS5 282 aa20.75■□□□□ 0.91
SHROOM1-201ENST00000319854 PLXNC1O60486 1568 aa20.74■□□□□ 0.91
SHROOM1-201ENST00000319854 ASXL2Q76L83 1435 aa20.74■□□□□ 0.91
SHROOM1-201ENST00000319854 CCDC136Q96JN2 1154 aa20.74■□□□□ 0.91
SHROOM1-201ENST00000319854 ZBTB47Q9UFB7 747 aaPredicted RBP20.74■□□□□ 0.91
SHROOM1-201ENST00000319854 ADGRL1O94910 1474 aa20.74■□□□□ 0.91
SHROOM1-201ENST00000319854 ANP32AP39687 249 aaKnown RBP20.73■□□□□ 0.91
SHROOM1-201ENST00000319854 IQGAP3Q86VI3 1631 aa20.73■□□□□ 0.91
SHROOM1-201ENST00000319854 RTL5Q5HYW3 569 aaPredicted RBP20.73■□□□□ 0.91
SHROOM1-201ENST00000319854 NUDCQ9Y266 331 aa20.73■□□□□ 0.91
SHROOM1-201ENST00000319854 PER1O15534 1290 aaPredicted RBP20.72■□□□□ 0.91
SHROOM1-201ENST00000319854 KANK1Q14678 1352 aa20.71■□□□□ 0.91
SHROOM1-201ENST00000319854 TRPM1Q7Z4N2 1603 aa20.71■□□□□ 0.91
SHROOM1-201ENST00000319854 CFAP70Q5T0N1 1121 aa20.71■□□□□ 0.91
SHROOM1-201ENST00000319854 NUTM2DQ5VT03 806 aaPredicted RBP20.71■□□□□ 0.91
SHROOM1-201ENST00000319854 NLRP13Q86W25 1043 aa20.71■□□□□ 0.91
SHROOM1-201ENST00000319854 ZFYVE16Q7Z3T8 1539 aa20.68■□□□□ 0.9
SHROOM1-201ENST00000319854 RAPGEF3O95398 923 aa20.67■□□□□ 0.9
SHROOM1-201ENST00000319854 CDCA7LQ96GN5 454 aa20.66■□□□□ 0.9
SHROOM1-201ENST00000319854 KNSTRNQ9Y448 316 aa20.66■□□□□ 0.9
SHROOM1-201ENST00000319854 ATP10AO60312 1499 aa20.66■□□□□ 0.9
SHROOM1-201ENST00000319854 UGGT1Q9NYU2 1555 aa20.66■□□□□ 0.9
SHROOM1-201ENST00000319854 BRD4O60885 1362 aaPredicted RBP20.66■□□□□ 0.9
SHROOM1-201ENST00000319854 GPRASP1Q5JY77 1395 aa20.66■□□□□ 0.9
SHROOM1-201ENST00000319854 ADGRF5Q8IZF2 1346 aa20.65■□□□□ 0.9
SHROOM1-201ENST00000319854 ATP7AQ04656 1500 aa20.64■□□□□ 0.89
SHROOM1-201ENST00000319854 E9PCH4 1651 aa20.63■□□□□ 0.89
SHROOM1-201ENST00000319854 CFAP65Q6ZU64 1925 aaKnown RBP20.63■□□□□ 0.89
SHROOM1-201ENST00000319854 SMG6Q86US8 1419 aaKnown RBP20.63■□□□□ 0.89
SHROOM1-201ENST00000319854 MAGI2Q86UL8 1455 aa20.63■□□□□ 0.89
SHROOM1-201ENST00000319854 COL17A1Q9UMD9 1497 aaPredicted RBP20.62■□□□□ 0.89
SHROOM1-201ENST00000319854 RNF123Q5XPI4 1314 aa20.62■□□□□ 0.89
SHROOM1-201ENST00000319854 RTEL1-TNFRSF6BF6WH68 1400 aa20.61■□□□□ 0.89
SHROOM1-201ENST00000319854 NPM2Q86SE8 214 aaKnown RBP20.61■□□□□ 0.89
SHROOM1-201ENST00000319854 ZBTB4Q9P1Z0 1013 aaPredicted RBP20.61■□□□□ 0.89
SHROOM1-201ENST00000319854 PARD3Q8TEW0 1356 aa20.61■□□□□ 0.89
SHROOM1-201ENST00000319854 LAS1LQ9Y4W2 734 aaKnown RBP20.6■□□□□ 0.89
SHROOM1-201ENST00000319854 PRDM15P57071 1507 aaPredicted RBP20.58■□□□□ 0.89
SHROOM1-201ENST00000319854 TMEM132EQ6IEE7 984 aa20.58■□□□□ 0.89
Retrieved 100 of 20,778 RNA–protein pairs in 17.5 ms