RNA–Protein interactions for RNA: ENST00000317840.9

COL3A1-202, Transcript of collagen type III alpha 1 chain, humanhuman

TSL 2 BASIC

Gene COL3A1, Length 3,873 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL3A1-202ENST00000317840 WDR62O43379 1518 aa13.89□□□□□ -0.19
COL3A1-202ENST00000317840 MAGI1Q96QZ7 1491 aaPredicted RBP13.89□□□□□ -0.19
COL3A1-202ENST00000317840 DHX29Q7Z478 1369 aaKnown RBP13.89□□□□□ -0.19
COL3A1-202ENST00000317840 NUP153P49790 1475 aaKnown RBP13.89□□□□□ -0.19
COL3A1-202ENST00000317840 CAMSAP2Q08AD1 1489 aa13.89□□□□□ -0.19
COL3A1-202ENST00000317840 CDCA7LQ96GN5 454 aa13.89□□□□□ -0.19
COL3A1-202ENST00000317840 WDR43Q15061 677 aaKnown RBP eCLIP13.88□□□□□ -0.19
COL3A1-202ENST00000317840 TARBP1Q13395 1621 aaKnown RBP13.88□□□□□ -0.19
COL3A1-202ENST00000317840 NBPF1Q3BBV0 1214 aa13.87□□□□□ -0.19
COL3A1-202ENST00000317840 NUTM2DQ5VT03 806 aaPredicted RBP13.86□□□□□ -0.19
COL3A1-202ENST00000317840 ADAMTS12P58397 1594 aa13.86□□□□□ -0.19
COL3A1-202ENST00000317840 EIF4G3O43432 1585 aaKnown RBP13.86□□□□□ -0.19
COL3A1-202ENST00000317840 TCERG1O14776 1098 aaKnown RBP13.86□□□□□ -0.19
COL3A1-202ENST00000317840 PANK3Q9H999 370 aa13.86□□□□□ -0.19
COL3A1-202ENST00000317840 NEFMP07197 916 aa13.85□□□□□ -0.19
COL3A1-202ENST00000317840 BRD4O60885 1362 aaPredicted RBP13.85□□□□□ -0.19
COL3A1-202ENST00000317840 PZPP20742 1482 aa13.85□□□□□ -0.19
COL3A1-202ENST00000317840 PDE4AP27815 886 aa13.85□□□□□ -0.19
COL3A1-202ENST00000317840 TMF1P82094 1093 aa13.85□□□□□ -0.19
COL3A1-202ENST00000317840 ESF1Q9H501 851 aaKnown RBP13.84□□□□□ -0.19
COL3A1-202ENST00000317840 KNSTRNQ9Y448 316 aa13.84□□□□□ -0.19
COL3A1-202ENST00000317840 GPATCH8Q9UKJ3 1502 aaKnown RBP13.84□□□□□ -0.19
COL3A1-202ENST00000317840 C9orf84Q5VXU9 1444 aa13.84□□□□□ -0.19
COL3A1-202ENST00000317840 CCDC144AA2RUR9 1427 aa13.83□□□□□ -0.19
COL3A1-202ENST00000317840 PDE3BQ13370 1112 aa13.83□□□□□ -0.2
COL3A1-202ENST00000317840 DNMT1P26358 1616 aaKnown RBP13.82□□□□□ -0.2
COL3A1-202ENST00000317840 RSPH4AQ5TD94 716 aa13.81□□□□□ -0.2
COL3A1-202ENST00000317840 DISP1Q96F81 1524 aa13.8□□□□□ -0.2
COL3A1-202ENST00000317840 CRBNQ96SW2 442 aa13.8□□□□□ -0.2
COL3A1-202ENST00000317840 SAFB2Q14151 953 aaKnown RBP eCLIP13.8□□□□□ -0.2
COL3A1-202ENST00000317840 PBRM1Q86U86 1689 aa13.8□□□□□ -0.2
COL3A1-202ENST00000317840 SKAP1Q86WV1 359 aa13.8□□□□□ -0.2
COL3A1-202ENST00000317840 RGS3P49796 1198 aa13.79□□□□□ -0.2
COL3A1-202ENST00000317840 CANXP27824 592 aaKnown RBP13.78□□□□□ -0.2
COL3A1-202ENST00000317840 RAPGEF6Q8TEU7 1601 aa13.78□□□□□ -0.2
COL3A1-202ENST00000317840 RTN4Q9NQC3 1192 aaKnown RBP13.78□□□□□ -0.2
COL3A1-202ENST00000317840 ARHGAP5Q13017 1502 aa13.78□□□□□ -0.2
COL3A1-202ENST00000317840 ATP10BO94823 1461 aa13.77□□□□□ -0.2
COL3A1-202ENST00000317840 KIAA0556O60303 1618 aa13.77□□□□□ -0.2
COL3A1-202ENST00000317840 GOLGA6L2Q8N9W4 650 aaPredicted RBP13.77□□□□□ -0.21
COL3A1-202ENST00000317840 RNF123Q5XPI4 1314 aa13.77□□□□□ -0.21
COL3A1-202ENST00000317840 TNNT2P45379 298 aaPredicted RBP13.75□□□□□ -0.21
COL3A1-202ENST00000317840 ADAMTS8Q9UP79 889 aa13.75□□□□□ -0.21
COL3A1-202ENST00000317840 DDRGK1Q96HY6 314 aa13.74□□□□□ -0.21
COL3A1-202ENST00000317840 PPM1GO15355 546 aaPredicted RBP13.74□□□□□ -0.21
COL3A1-202ENST00000317840 SLC4A3P48751 1232 aa13.74□□□□□ -0.21
COL3A1-202ENST00000317840 RALGAPBQ86X10 1494 aa13.74□□□□□ -0.21
COL3A1-202ENST00000317840 CCDC146Q8IYE0 955 aa13.73□□□□□ -0.21
COL3A1-202ENST00000317840 BACH2Q9BYV9 841 aa13.73□□□□□ -0.21
COL3A1-202ENST00000317840 STK26Q9P289 416 aa13.72□□□□□ -0.21
COL3A1-202ENST00000317840 KANK1Q14678 1352 aa13.72□□□□□ -0.21
COL3A1-202ENST00000317840 RAPGEF3O95398 923 aa13.72□□□□□ -0.21
COL3A1-202ENST00000317840 WASHC2CQ9Y4E1 1318 aa13.72□□□□□ -0.21
COL3A1-202ENST00000317840 MS4A1P11836 297 aa13.71□□□□□ -0.21
COL3A1-202ENST00000317840 CEP170Q5SW79 1584 aa13.71□□□□□ -0.21
COL3A1-202ENST00000317840 NEUROD2Q15784 382 aa13.71□□□□□ -0.21
COL3A1-202ENST00000317840 CDCA8Q53HL2 280 aa13.71□□□□□ -0.21
COL3A1-202ENST00000317840 TRHP20396 242 aaPredicted RBP13.71□□□□□ -0.22
COL3A1-202ENST00000317840 LRPPRCP42704 1394 aaKnown RBP13.71□□□□□ -0.22
COL3A1-202ENST00000317840 GOLGA2Q08379 1002 aa13.7□□□□□ -0.22
COL3A1-202ENST00000317840 KIF14Q15058 1648 aa13.7□□□□□ -0.22
COL3A1-202ENST00000317840 BCORL1Q5H9F3 1711 aa13.7□□□□□ -0.22
COL3A1-202ENST00000317840 C20orf194Q5TEA3 1177 aa13.7□□□□□ -0.22
COL3A1-202ENST00000317840 FAM69CQ0P6D2 419 aa13.69□□□□□ -0.22
COL3A1-202ENST00000317840 SCAPERQ9BY12 1400 aa13.69□□□□□ -0.22
COL3A1-202ENST00000317840 NUP160Q12769 1436 aa13.69□□□□□ -0.22
COL3A1-202ENST00000317840 UHRF1BP1Q6BDS2 1440 aa13.68□□□□□ -0.22
COL3A1-202ENST00000317840 PER1O15534 1290 aaPredicted RBP13.68□□□□□ -0.22
COL3A1-202ENST00000317840 DISP3Q9P2K9 1392 aa13.68□□□□□ -0.22
COL3A1-202ENST00000317840 ADGRL2O95490 1459 aa13.67□□□□□ -0.22
COL3A1-202ENST00000317840 MBD5Q9P267 1494 aa13.67□□□□□ -0.22
COL3A1-202ENST00000317840 ITSN2Q9NZM3 1697 aa13.66□□□□□ -0.22
COL3A1-202ENST00000317840 KDM5CP41229 1560 aa13.66□□□□□ -0.22
COL3A1-202ENST00000317840 PARD3Q8TEW0 1356 aa13.66□□□□□ -0.22
COL3A1-202ENST00000317840 TRAK1Q9UPV9 953 aa13.66□□□□□ -0.22
COL3A1-202ENST00000317840 APAF1O14727 1248 aa13.65□□□□□ -0.22
COL3A1-202ENST00000317840 PLEKHG5O94827 1062 aa13.65□□□□□ -0.22
COL3A1-202ENST00000317840 FRAT1Q92837 279 aaPredicted RBP13.65□□□□□ -0.22
COL3A1-202ENST00000317840 PPP2R1AP30153 589 aa13.65□□□□□ -0.22
COL3A1-202ENST00000317840 ERBINQ96RT1 1412 aa13.65□□□□□ -0.23
COL3A1-202ENST00000317840 TESK2Q96S53 571 aa13.65□□□□□ -0.23
COL3A1-202ENST00000317840 CENPQQ7L2Z9 268 aaPredicted RBP13.64□□□□□ -0.23
COL3A1-202ENST00000317840 PRAG1Q86YV5 1406 aa13.63□□□□□ -0.23
COL3A1-202ENST00000317840 CCDC141Q6ZP82 1450 aa13.63□□□□□ -0.23
COL3A1-202ENST00000317840 ARHGEF12Q9NZN5 1544 aa13.63□□□□□ -0.23
COL3A1-202ENST00000317840 USP35Q9P2H5 1018 aa13.62□□□□□ -0.23
COL3A1-202ENST00000317840 IL27Q8NEV9 243 aa13.61□□□□□ -0.23
COL3A1-202ENST00000317840 FAM161AQ3B820 660 aa13.61□□□□□ -0.23
COL3A1-202ENST00000317840 POGKQ9P215 609 aa13.6□□□□□ -0.23
COL3A1-202ENST00000317840 TMEM132EQ6IEE7 984 aa13.6□□□□□ -0.23
COL3A1-202ENST00000317840 FAM135AQ9P2D6 1515 aa13.6□□□□□ -0.23
COL3A1-202ENST00000317840 CFAP70Q5T0N1 1121 aa13.6□□□□□ -0.23
COL3A1-202ENST00000317840 PLEKHH2Q8IVE3 1493 aa13.6□□□□□ -0.23
COL3A1-202ENST00000317840 ADGBQ8N7X0 1667 aa13.58□□□□□ -0.23
COL3A1-202ENST00000317840 BCAR3O75815 825 aa13.58□□□□□ -0.24
COL3A1-202ENST00000317840 DUSP27Q5VZP5 1158 aa13.58□□□□□ -0.24
COL3A1-202ENST00000317840 RRP7AQ9Y3A4 280 aaKnown RBP13.58□□□□□ -0.24
COL3A1-202ENST00000317840 ARXQ96QS3 562 aa13.57□□□□□ -0.24
COL3A1-202ENST00000317840 SHANK2Q9UPX8 1470 aa13.57□□□□□ -0.24
COL3A1-202ENST00000317840 NFKBIBQ15653 356 aa13.57□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 11.1 ms