RNA–Protein interactions for RNA: ENST00000317516.11

TPM1-203, Transcript of tropomyosin 1, humanhuman

TSL 1 (best) BASIC

Gene TPM1, Length 738 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM1-203ENST00000317516 FBXO31Q5XUX0 539 aaPredicted RBP27.57■■■□□ 2
TPM1-203ENST00000317516 STRCQ7RTU9 1775 aa27.57■■■□□ 2
TPM1-203ENST00000317516 PKD2Q13563 968 aa27.56■■■□□ 2
TPM1-203ENST00000317516 FGD6Q6ZV73 1430 aa27.55■■■□□ 2
TPM1-203ENST00000317516 ABCC5O15440 1437 aa27.54■■■□□ 2
TPM1-203ENST00000317516 TNRQ92752 1358 aa27.54■■■□□ 2
TPM1-203ENST00000317516 RRP7BPQ9NSQ0 103 aa27.54■■■□□ 2
TPM1-203ENST00000317516 CAMSAP1Q5T5Y3 1602 aa27.53■■■□□ 2
TPM1-203ENST00000317516 PZPP20742 1482 aa27.53■■■□□ 2
TPM1-203ENST00000317516 NCKAP5LQ9HCH0 1330 aa27.53■■■□□ 2
TPM1-203ENST00000317516 PTPN23Q9H3S7 1636 aa27.52■■■□□ 2
TPM1-203ENST00000317516 KIF15Q9NS87 1388 aa27.51■■□□□ 1.99
TPM1-203ENST00000317516 SHANK2Q9UPX8 1470 aa27.51■■□□□ 1.99
TPM1-203ENST00000317516 DUOX2Q9NRD8 1548 aa27.5■■□□□ 1.99
TPM1-203ENST00000317516 A2ML1A8K2U0 1454 aa27.5■■□□□ 1.99
TPM1-203ENST00000317516 CEP170BQ9Y4F5 1589 aaPredicted RBP27.49■■□□□ 1.99
TPM1-203ENST00000317516 PLA2R1Q13018 1463 aa27.49■■□□□ 1.99
TPM1-203ENST00000317516 TCOF1Q13428 1488 aaKnown RBP27.49■■□□□ 1.99
TPM1-203ENST00000317516 DAPK1P53355 1430 aa27.49■■□□□ 1.99
TPM1-203ENST00000317516 MYO3AQ8NEV4 1616 aa27.48■■□□□ 1.99
TPM1-203ENST00000317516 CHIC2Q9UKJ5 165 aa27.46■■□□□ 1.99
TPM1-203ENST00000317516 ANKRD30AQ9BXX3 1397 aa27.46■■□□□ 1.99
TPM1-203ENST00000317516 FAM50AQ14320 339 aaKnown RBP27.45■■□□□ 1.98
TPM1-203ENST00000317516 THEMISQ8N1K5 641 aaPredicted RBP27.45■■□□□ 1.98
TPM1-203ENST00000317516 EIF2AK4Q9P2K8 1649 aaKnown RBP27.44■■□□□ 1.98
TPM1-203ENST00000317516 ZNF142P52746 1687 aaPredicted RBP27.43■■□□□ 1.98
TPM1-203ENST00000317516 ERBINQ96RT1 1412 aa27.43■■□□□ 1.98
TPM1-203ENST00000317516 RNF17Q9BXT8 1623 aaKnown RBP27.43■■□□□ 1.98
TPM1-203ENST00000317516 ABCC3O15438 1527 aa27.41■■□□□ 1.98
TPM1-203ENST00000317516 NLRP1Q9C000 1473 aa27.4■■□□□ 1.98
TPM1-203ENST00000317516 GRWD1Q9BQ67 446 aaKnown RBP eCLIP27.4■■□□□ 1.981e-6■■■□□ 19
TPM1-203ENST00000317516 ANKLE2Q86XL3 938 aa27.39■■□□□ 1.98
TPM1-203ENST00000317516 DNMT1P26358 1616 aaKnown RBP27.38■■□□□ 1.97
TPM1-203ENST00000317516 KANK1Q14678 1352 aa27.37■■□□□ 1.97
TPM1-203ENST00000317516 ZC3H13Q5T200 1668 aaKnown RBP27.35■■□□□ 1.97
TPM1-203ENST00000317516 CROCC2H7BZ55 1655 aa27.33■■□□□ 1.97
TPM1-203ENST00000317516 ZNF335Q9H4Z2 1342 aaPredicted RBP27.33■■□□□ 1.97
TPM1-203ENST00000317516 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP27.33■■□□□ 1.97
TPM1-203ENST00000317516 MROH1Q8NDA8 1641 aa27.31■■□□□ 1.96
TPM1-203ENST00000317516 ARHGAP31Q2M1Z3 1444 aa27.31■■□□□ 1.96
TPM1-203ENST00000317516 ERVK-7P63135 1459 aa27.31■■□□□ 1.96
TPM1-203ENST00000317516 UGGT1Q9NYU2 1555 aa27.31■■□□□ 1.96
TPM1-203ENST00000317516 LTBP4Q8N2S1 1624 aa27.3■■□□□ 1.96
TPM1-203ENST00000317516 SPATA31D1Q6ZQQ2 1576 aa27.29■■□□□ 1.96
TPM1-203ENST00000317516 PRDM15P57071 1507 aaPredicted RBP27.28■■□□□ 1.96
TPM1-203ENST00000317516 ADGRL2O95490 1459 aa27.26■■□□□ 1.95
TPM1-203ENST00000317516 IQSEC2Q5JU85 1478 aa27.26■■□□□ 1.95
TPM1-203ENST00000317516 ANKRD50Q9ULJ7 1429 aa27.22■■□□□ 1.95
TPM1-203ENST00000317516 STAG3Q9UJ98 1225 aa27.2■■□□□ 1.94
TPM1-203ENST00000317516 CEP152O94986 1710 aa27.19■■□□□ 1.94
TPM1-203ENST00000317516 NPHP4O75161 1426 aaPredicted RBP27.19■■□□□ 1.94
TPM1-203ENST00000317516 PPARGC1BQ86YN6 1023 aaKnown RBP27.19■■□□□ 1.94
TPM1-203ENST00000317516 DEPDC5O75140 1603 aa27.18■■□□□ 1.94
TPM1-203ENST00000317516 LMTK2Q8IWU2 1503 aa27.17■■□□□ 1.94
TPM1-203ENST00000317516 MED14O60244 1454 aa27.17■■□□□ 1.94
TPM1-203ENST00000317516 EID1Q9Y6B2 187 aa27.15■■□□□ 1.94
TPM1-203ENST00000317516 NEURL4Q96JN8 1562 aa27.14■■□□□ 1.94
TPM1-203ENST00000317516 ROCK1Q13464 1354 aa27.14■■□□□ 1.94
TPM1-203ENST00000317516 UBAP1LF5GYI3 381 aa27.14■■□□□ 1.94
TPM1-203ENST00000317516 TXNDC2Q86VQ3 553 aa27.14■■□□□ 1.94
TPM1-203ENST00000317516 ITGAEP38570 1179 aa27.12■■□□□ 1.93
TPM1-203ENST00000317516 IDI1Q13907 227 aa27.12■■□□□ 1.93
TPM1-203ENST00000317516 VWDEQ8N2E2 1590 aa27.12■■□□□ 1.93
TPM1-203ENST00000317516 POLR1AO95602 1720 aaPredicted RBP27.12■■□□□ 1.93
TPM1-203ENST00000317516 SLC52A1Q9NWF4 448 aa27.11■■□□□ 1.93
TPM1-203ENST00000317516 CFAP65Q6ZU64 1925 aaKnown RBP27.1■■□□□ 1.93
TPM1-203ENST00000317516 CPS1P31327 1500 aa27.09■■□□□ 1.93
TPM1-203ENST00000317516 LTKP29376 864 aa27.08■■□□□ 1.93
TPM1-203ENST00000317516 SCAF11Q99590 1463 aaKnown RBP27.07■■□□□ 1.92
TPM1-203ENST00000317516 NOS1P29475 1434 aa27.06■■□□□ 1.92
TPM1-203ENST00000317516 TOM1O60784 492 aa27.05■■□□□ 1.92
TPM1-203ENST00000317516 TMEM2Q9UHN6 1383 aa27.05■■□□□ 1.92
TPM1-203ENST00000317516 RPRD2Q5VT52 1461 aaKnown RBP27.04■■□□□ 1.92
TPM1-203ENST00000317516 ARHGAP23Q9P227 1491 aa27.04■■□□□ 1.92
TPM1-203ENST00000317516 EFCAB6Q5THR3 1501 aa27.04■■□□□ 1.92
TPM1-203ENST00000317516 SLIT1O75093 1534 aa27.03■■□□□ 1.92
TPM1-203ENST00000317516 UBR1Q8IWV7 1749 aa27.03■■□□□ 1.92
TPM1-203ENST00000317516 IQGAP1P46940 1657 aa27.01■■□□□ 1.91
TPM1-203ENST00000317516 HDGFP51858 240 aaKnown RBP26.97■■□□□ 1.91
TPM1-203ENST00000317516 PIK3C2BO00750 1634 aa26.97■■□□□ 1.91
TPM1-203ENST00000317516 NUP155O75694 1391 aa26.97■■□□□ 1.91
TPM1-203ENST00000317516 SCAF1Q9H7N4 1312 aaKnown RBP26.95■■□□□ 1.91
TPM1-203ENST00000317516 SYNMO15061 1565 aa26.94■■□□□ 1.9
TPM1-203ENST00000317516 PIP4K2BP78356 416 aa26.93■■□□□ 1.9
TPM1-203ENST00000317516 RRBP1Q9P2E9 1410 aaKnown RBP26.91■■□□□ 1.9
TPM1-203ENST00000317516 BCANQ96GW7 911 aa26.91■■□□□ 1.9
TPM1-203ENST00000317516 UNC13BO14795 1591 aa26.91■■□□□ 1.9
TPM1-203ENST00000317516 TET3O43151 1660 aa26.91■■□□□ 1.9
TPM1-203ENST00000317516 KDM5AP29375 1690 aaKnown RBP26.91■■□□□ 1.9
TPM1-203ENST00000317516 CHGAP10645 457 aaKnown RBP26.89■■□□□ 1.9
TPM1-203ENST00000317516 ADGRB3O60242 1522 aa26.88■■□□□ 1.89
TPM1-203ENST00000317516 PPP1R15AO75807 674 aaPredicted RBP26.87■■□□□ 1.89
TPM1-203ENST00000317516 SLC26A8Q96RN1 970 aa26.87■■□□□ 1.89
TPM1-203ENST00000317516 LRRC7Q96NW7 1537 aa26.86■■□□□ 1.89
TPM1-203ENST00000317516 ABCF1Q8NE71 845 aaKnown RBP eCLIP26.86■■□□□ 1.89
TPM1-203ENST00000317516 DISP3Q9P2K9 1392 aa26.85■■□□□ 1.89
TPM1-203ENST00000317516 KCNA6P17658 529 aa26.85■■□□□ 1.89
TPM1-203ENST00000317516 GCC2Q8IWJ2 1684 aa26.82■■□□□ 1.88
TPM1-203ENST00000317516 IQGAP3Q86VI3 1631 aa26.81■■□□□ 1.88
TPM1-203ENST00000317516 HSPA1LP34931 641 aa26.8■■□□□ 1.88
Retrieved 100 of 20,778 RNA–protein pairs in 76.6 ms