RNA–Protein interactions for RNA: ENST00000316097.12

SCAMP4-201, Transcript of secretory carrier membrane protein 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SCAMP4, Length 2,684 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCAMP4-201ENST00000316097 FAM135AQ9P2D6 1515 aa23.71■■□□□ 1.39
SCAMP4-201ENST00000316097 HNRNPUQ00839 825 aaKnown RBP eCLIP23.71■■□□□ 1.39
SCAMP4-201ENST00000316097 PLXNC1O60486 1568 aa23.7■■□□□ 1.38
SCAMP4-201ENST00000316097 DUOX2Q9NRD8 1548 aa23.69■■□□□ 1.38
SCAMP4-201ENST00000316097 TEX14Q8IWB6 1497 aa23.69■■□□□ 1.38
SCAMP4-201ENST00000316097 KDM5DQ9BY66 1539 aa23.67■■□□□ 1.38
SCAMP4-201ENST00000316097 FANCIQ9NVI1 1328 aa23.67■■□□□ 1.38
SCAMP4-201ENST00000316097 ZFYVE16Q7Z3T8 1539 aa23.66■■□□□ 1.38
SCAMP4-201ENST00000316097 RAPGEF3O95398 923 aa23.66■■□□□ 1.38
SCAMP4-201ENST00000316097 KDM2AQ9Y2K7 1162 aa23.66■■□□□ 1.38
SCAMP4-201ENST00000316097 HSPA5P11021 654 aaKnown RBP23.65■■□□□ 1.38
SCAMP4-201ENST00000316097 KIF3BO15066 747 aa23.64■■□□□ 1.38
SCAMP4-201ENST00000316097 ERICH6Q7L0X2 663 aa23.64■■□□□ 1.38
SCAMP4-201ENST00000316097 RTEL1-TNFRSF6BF6WH68 1400 aa23.63■■□□□ 1.37
SCAMP4-201ENST00000316097 ERBINQ96RT1 1412 aa23.63■■□□□ 1.37
SCAMP4-201ENST00000316097 RGL3Q3MIN7 710 aa23.62■■□□□ 1.37
SCAMP4-201ENST00000316097 ATP7AQ04656 1500 aa23.62■■□□□ 1.37
SCAMP4-201ENST00000316097 FAM69CQ0P6D2 419 aa23.6■■□□□ 1.37
SCAMP4-201ENST00000316097 UNC13BO14795 1591 aa23.59■■□□□ 1.37
SCAMP4-201ENST00000316097 DCAF11Q8TEB1 546 aa23.59■■□□□ 1.37
SCAMP4-201ENST00000316097 PLA2R1Q13018 1463 aa23.58■■□□□ 1.37
SCAMP4-201ENST00000316097 EIF4G2P78344 907 aaKnown RBP eCLIP23.57■■□□□ 1.36
SCAMP4-201ENST00000316097 INO80Q9ULG1 1556 aaPredicted RBP23.55■■□□□ 1.36
SCAMP4-201ENST00000316097 ZNF518AQ6AHZ1 1483 aa23.54■■□□□ 1.36
SCAMP4-201ENST00000316097 DHX29Q7Z478 1369 aaKnown RBP23.54■■□□□ 1.36
SCAMP4-201ENST00000316097 CCDC144AA2RUR9 1427 aa23.53■■□□□ 1.36
SCAMP4-201ENST00000316097 IQGAP3Q86VI3 1631 aa23.52■■□□□ 1.36
SCAMP4-201ENST00000316097 C11orf95C9JLR9 678 aaPredicted RBP23.52■■□□□ 1.36
SCAMP4-201ENST00000316097 POGZQ7Z3K3 1410 aa23.52■■□□□ 1.35
SCAMP4-201ENST00000316097 MAGI2Q86UL8 1455 aa23.51■■□□□ 1.35
SCAMP4-201ENST00000316097 KIDINS220Q9ULH0 1771 aa23.5■■□□□ 1.35
SCAMP4-201ENST00000316097 GGT6Q6P531 493 aa23.48■■□□□ 1.35
SCAMP4-201ENST00000316097 WASHC2AQ641Q2 1341 aa23.48■■□□□ 1.35
SCAMP4-201ENST00000316097 PPP4R2Q9NY27 417 aa23.47■■□□□ 1.35
SCAMP4-201ENST00000316097 ERICH6BQ5W0A0 696 aa23.46■■□□□ 1.35
SCAMP4-201ENST00000316097 A2MP01023 1474 aa23.43■■□□□ 1.34
SCAMP4-201ENST00000316097 NEO1Q92859 1461 aa23.43■■□□□ 1.34
SCAMP4-201ENST00000316097 CCDC184Q52MB2 194 aa23.42■■□□□ 1.34
SCAMP4-201ENST00000316097 KANK1Q14678 1352 aa23.42■■□□□ 1.34
SCAMP4-201ENST00000316097 CFAP74Q9C0B2 1584 aa23.41■■□□□ 1.34
SCAMP4-201ENST00000316097 MAP3K4Q9Y6R4 1608 aa23.41■■□□□ 1.34
SCAMP4-201ENST00000316097 KDM5CP41229 1560 aa23.41■■□□□ 1.34
SCAMP4-201ENST00000316097 CARD11Q9BXL7 1154 aa23.4■■□□□ 1.34
SCAMP4-201ENST00000316097 E9PCH4 1651 aa23.39■■□□□ 1.34
SCAMP4-201ENST00000316097 MLH3Q9UHC1 1453 aa23.39■■□□□ 1.34
SCAMP4-201ENST00000316097 B4GALNT3Q6L9W6 998 aa23.38■■□□□ 1.33
SCAMP4-201ENST00000316097 SPATA31E1Q6ZUB1 1445 aa23.38■■□□□ 1.33
SCAMP4-201ENST00000316097 TSPOAP1O95153 1857 aa23.38■■□□□ 1.33
SCAMP4-201ENST00000316097 NBPF1Q3BBV0 1214 aa23.37■■□□□ 1.33
SCAMP4-201ENST00000316097 DIP2BQ9P265 1576 aa23.37■■□□□ 1.33
SCAMP4-201ENST00000316097 DEPDC5O75140 1603 aa23.37■■□□□ 1.33
SCAMP4-201ENST00000316097 ATP10AO60312 1499 aa23.36■■□□□ 1.33
SCAMP4-201ENST00000316097 MROH1Q8NDA8 1641 aa23.36■■□□□ 1.33
SCAMP4-201ENST00000316097 YEATS2Q9ULM3 1422 aa23.36■■□□□ 1.33
SCAMP4-201ENST00000316097 FAM9BQ8IZU0 186 aa23.36■■□□□ 1.33
SCAMP4-201ENST00000316097 POLR3GLQ9BT43 218 aa23.36■■□□□ 1.33
SCAMP4-201ENST00000316097 FRMPD1Q5SYB0 1578 aa23.36■■□□□ 1.33
SCAMP4-201ENST00000316097 HECW2Q9P2P5 1572 aa23.36■■□□□ 1.33
SCAMP4-201ENST00000316097 USP47Q96K76 1375 aa23.36■■□□□ 1.33
SCAMP4-201ENST00000316097 UHRF1BP1Q6BDS2 1440 aa23.36■■□□□ 1.33
SCAMP4-201ENST00000316097 CNTLNQ9NXG0 1405 aa23.35■■□□□ 1.33
SCAMP4-201ENST00000316097 GLI2P10070 1586 aa23.34■■□□□ 1.33
SCAMP4-201ENST00000316097 ABCA6Q8N139 1617 aa23.34■■□□□ 1.33
SCAMP4-201ENST00000316097 VWDEQ8N2E2 1590 aa23.32■■□□□ 1.32
SCAMP4-201ENST00000316097 KIF7Q2M1P5 1343 aa23.31■■□□□ 1.32
SCAMP4-201ENST00000316097 WASHC2CQ9Y4E1 1318 aa23.31■■□□□ 1.32
SCAMP4-201ENST00000316097 PRDM15P57071 1507 aaPredicted RBP23.31■■□□□ 1.32
SCAMP4-201ENST00000316097 ROCK2O75116 1388 aaKnown RBP23.31■■□□□ 1.32
SCAMP4-201ENST00000316097 CCDC7Q96M83 1385 aa23.3■■□□□ 1.32
SCAMP4-201ENST00000316097 ST20-MTHFSA0A0A6YYL1 179 aa23.3■■□□□ 1.32
SCAMP4-201ENST00000316097 PRKRIP1Q9H875 184 aaPredicted RBP23.3■■□□□ 1.32
SCAMP4-201ENST00000316097 MRS2Q9HD23 443 aa23.3■■□□□ 1.32
SCAMP4-201ENST00000316097 UGGT1Q9NYU2 1555 aa23.3■■□□□ 1.32
SCAMP4-201ENST00000316097 EIF2AK4Q9P2K8 1649 aaKnown RBP23.29■■□□□ 1.32
SCAMP4-201ENST00000316097 PRAG1Q86YV5 1406 aa23.29■■□□□ 1.32
SCAMP4-201ENST00000316097 DEKP35659 375 aaKnown RBP23.29■■□□□ 1.32
SCAMP4-201ENST00000316097 RALGAPBQ86X10 1494 aa23.29■■□□□ 1.32
SCAMP4-201ENST00000316097 PTPRTO14522 1441 aa23.28■■□□□ 1.32
SCAMP4-201ENST00000316097 TET3O43151 1660 aa23.28■■□□□ 1.32
SCAMP4-201ENST00000316097 ZBED9Q6R2W3 1325 aa23.28■■□□□ 1.32
SCAMP4-201ENST00000316097 RICTORQ6R327 1708 aa23.27■■□□□ 1.32
SCAMP4-201ENST00000316097 CNGB1Q14028 1251 aaPredicted RBP23.26■■□□□ 1.31
SCAMP4-201ENST00000316097 DIP2CQ9Y2E4 1556 aa23.25■■□□□ 1.31
SCAMP4-201ENST00000316097 CHGAP10645 457 aaKnown RBP23.25■■□□□ 1.31
SCAMP4-201ENST00000316097 TRPM2O94759 1503 aa23.24■■□□□ 1.31
SCAMP4-201ENST00000316097 CLTCL1P53675 1640 aa23.24■■□□□ 1.31
SCAMP4-201ENST00000316097 CEP152O94986 1710 aa23.23■■□□□ 1.31
SCAMP4-201ENST00000316097 CFAP65Q6ZU64 1925 aaKnown RBP23.23■■□□□ 1.31
SCAMP4-201ENST00000316097 PPRC1Q5VV67 1664 aaKnown RBP23.23■■□□□ 1.31
SCAMP4-201ENST00000316097 SPHKAPQ2M3C7 1700 aa23.23■■□□□ 1.31
SCAMP4-201ENST00000316097 NOP58Q9Y2X3 529 aaKnown RBP23.22■■□□□ 1.31
SCAMP4-201ENST00000316097 BCORL1Q5H9F3 1711 aa23.21■■□□□ 1.31
SCAMP4-201ENST00000316097 NPATQ14207 1427 aa23.21■■□□□ 1.31
SCAMP4-201ENST00000316097 EFCAB6Q5THR3 1501 aa23.2■■□□□ 1.31
SCAMP4-201ENST00000316097 COL17A1Q9UMD9 1497 aaPredicted RBP23.2■■□□□ 1.3
SCAMP4-201ENST00000316097 RNF17Q9BXT8 1623 aaKnown RBP23.19■■□□□ 1.3
SCAMP4-201ENST00000316097 NBR1Q14596 966 aa23.18■■□□□ 1.3
SCAMP4-201ENST00000316097 MLECQ14165 292 aa23.16■■□□□ 1.3
SCAMP4-201ENST00000316097 TRPM1Q7Z4N2 1603 aa23.16■■□□□ 1.3
SCAMP4-201ENST00000316097 PAK3O75914 559 aaPredicted RBP23.16■■□□□ 1.3
Retrieved 100 of 20,778 RNA–protein pairs in 46 ms