RNA–Protein interactions for RNA: ENST00000310301.8

VPS41-202, Transcript of VPS41, HOPS complex subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS41, Length 5,903 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-202ENST00000310301 FYCO1Q9BQS8 1478 aa10.5□□□□□ -0.73
VPS41-202ENST00000310301 EIF3AQ14152 1382 aaKnown RBP10.5□□□□□ -0.73
VPS41-202ENST00000310301 GOLGA6L6A8MZA4 724 aa10.5□□□□□ -0.73
VPS41-202ENST00000310301 KIF15Q9NS87 1388 aa10.5□□□□□ -0.73
VPS41-202ENST00000310301 KIF21BO75037 1637 aa10.5□□□□□ -0.73
VPS41-202ENST00000310301 STAC3Q96MF2 364 aa10.49□□□□□ -0.73
VPS41-202ENST00000310301 SLC52A1Q9NWF4 448 aa10.49□□□□□ -0.73
VPS41-202ENST00000310301 KNSTRNQ9Y448 316 aa10.49□□□□□ -0.73
VPS41-202ENST00000310301 ADGRL1O94910 1474 aa10.49□□□□□ -0.73
VPS41-202ENST00000310301 SAFB2Q14151 953 aaKnown RBP eCLIP10.48□□□□□ -0.73
VPS41-202ENST00000310301 TMF1P82094 1093 aa10.48□□□□□ -0.73
VPS41-202ENST00000310301 SETD5Q9C0A6 1442 aa10.47□□□□□ -0.73
VPS41-202ENST00000310301 NUDCQ9Y266 331 aa10.47□□□□□ -0.73
VPS41-202ENST00000310301 NPHP1O15259 732 aa10.47□□□□□ -0.73
VPS41-202ENST00000310301 FTSJ3Q8IY81 847 aaKnown RBP10.47□□□□□ -0.73
VPS41-202ENST00000310301 PNNQ9H307 717 aaKnown RBP10.47□□□□□ -0.73
VPS41-202ENST00000310301 MPHOSPH9Q99550 1183 aa10.46□□□□□ -0.73
VPS41-202ENST00000310301 BIVM-ERCC5R4GMW8 1640 aa10.46□□□□□ -0.74
VPS41-202ENST00000310301 CCDC144AA2RUR9 1427 aa10.46□□□□□ -0.74
VPS41-202ENST00000310301 NUP160Q12769 1436 aa10.46□□□□□ -0.74
VPS41-202ENST00000310301 SPRYD3Q8NCJ5 442 aa10.46□□□□□ -0.74
VPS41-202ENST00000310301 HSCBQ8IWL3 235 aa10.45□□□□□ -0.74
VPS41-202ENST00000310301 WDR7Q9Y4E6 1490 aa10.45□□□□□ -0.74
VPS41-202ENST00000310301 NRDCO43847 1150 aa10.45□□□□□ -0.74
VPS41-202ENST00000310301 ADAMTS12P58397 1594 aa10.44□□□□□ -0.74
VPS41-202ENST00000310301 TERF2IPQ9NYB0 399 aa10.44□□□□□ -0.74
VPS41-202ENST00000310301 TNNT3P45378 269 aaPredicted RBP10.44□□□□□ -0.74
VPS41-202ENST00000310301 EVA1CP58658 441 aa10.44□□□□□ -0.74
VPS41-202ENST00000310301 NUTM2DQ5VT03 806 aaPredicted RBP10.44□□□□□ -0.74
VPS41-202ENST00000310301 SF3B2Q13435 895 aaKnown RBP10.43□□□□□ -0.74
VPS41-202ENST00000310301 FANCAO15360 1455 aa10.43□□□□□ -0.74
VPS41-202ENST00000310301 TSHZ2Q9NRE2 1034 aa10.43□□□□□ -0.74
VPS41-202ENST00000310301 TIMELESSQ9UNS1 1208 aa10.43□□□□□ -0.74
VPS41-202ENST00000310301 TOM1O60784 492 aa10.43□□□□□ -0.74
VPS41-202ENST00000310301 PSME1Q06323 249 aa10.43□□□□□ -0.74
VPS41-202ENST00000310301 EHBP1L1Q8N3D4 1523 aa10.42□□□□□ -0.74
VPS41-202ENST00000310301 ABCC2Q92887 1545 aa10.42□□□□□ -0.74
VPS41-202ENST00000310301 DRC7Q8IY82 874 aa10.42□□□□□ -0.74
VPS41-202ENST00000310301 PIP4K2BP78356 416 aa10.42□□□□□ -0.74
VPS41-202ENST00000310301 MIA2Q96PC5 1412 aa10.41□□□□□ -0.74
VPS41-202ENST00000310301 FRAT1Q92837 279 aaPredicted RBP10.41□□□□□ -0.74
VPS41-202ENST00000310301 NCOA2Q15596 1464 aa10.41□□□□□ -0.74
VPS41-202ENST00000310301 EPRSP07814 1512 aaKnown RBP10.4□□□□□ -0.74
VPS41-202ENST00000310301 GZF1Q9H116 711 aaPredicted RBP10.4□□□□□ -0.74
VPS41-202ENST00000310301 KIF14Q15058 1648 aa10.4□□□□□ -0.75
VPS41-202ENST00000310301 ARHGEF11O15085 1522 aa10.4□□□□□ -0.75
VPS41-202ENST00000310301 ANKRD50Q9ULJ7 1429 aa10.4□□□□□ -0.75
VPS41-202ENST00000310301 DHX57Q6P158 1386 aaKnown RBP10.39□□□□□ -0.75
VPS41-202ENST00000310301 HMGB2P26583 209 aaKnown RBP10.39□□□□□ -0.75
VPS41-202ENST00000310301 ZNF644Q9H582 1327 aaPredicted RBP10.39□□□□□ -0.75
VPS41-202ENST00000310301 SOX12O15370 315 aa10.39□□□□□ -0.75
VPS41-202ENST00000310301 HSP90AA2PQ14568 343 aaPredicted RBP10.39□□□□□ -0.75
VPS41-202ENST00000310301 TULP1O00294 542 aaPredicted RBP10.39□□□□□ -0.75
VPS41-202ENST00000310301 TAOK2Q9UL54 1235 aa10.39□□□□□ -0.75
VPS41-202ENST00000310301 VSIG10Q8N0Z9 540 aa10.38□□□□□ -0.75
VPS41-202ENST00000310301 THOC2Q8NI27 1593 aaKnown RBP10.38□□□□□ -0.75
VPS41-202ENST00000310301 GOLGA6L4A6NEF3 574 aa10.38□□□□□ -0.75
VPS41-202ENST00000310301 NEUROD2Q15784 382 aa10.38□□□□□ -0.75
VPS41-202ENST00000310301 FGD6Q6ZV73 1430 aa10.38□□□□□ -0.75
VPS41-202ENST00000310301 KIAA2012Q0VF49 1180 aa10.37□□□□□ -0.75
VPS41-202ENST00000310301 C9orf84Q5VXU9 1444 aa10.37□□□□□ -0.75
VPS41-202ENST00000310301 MAPK8IP3Q9UPT6 1336 aa10.37□□□□□ -0.75
VPS41-202ENST00000310301 GPRASP1Q5JY77 1395 aa10.36□□□□□ -0.75
VPS41-202ENST00000310301 GOLGA6L3A6NEY3 463 aa10.36□□□□□ -0.75
VPS41-202ENST00000310301 UBAP1LF5GYI3 381 aa10.36□□□□□ -0.75
VPS41-202ENST00000310301 LRRC9Q6ZRR7 1453 aa10.36□□□□□ -0.75
VPS41-202ENST00000310301 RSPH6AQ9H0K4 717 aa10.35□□□□□ -0.75
VPS41-202ENST00000310301 ROCK2O75116 1388 aaKnown RBP10.35□□□□□ -0.75
VPS41-202ENST00000310301 CEP170Q5SW79 1584 aa10.35□□□□□ -0.75
VPS41-202ENST00000310301 TMX4Q9H1E5 349 aaPredicted RBP10.35□□□□□ -0.75
VPS41-202ENST00000310301 CHMP4AQ9BY43 222 aa10.35□□□□□ -0.75
VPS41-202ENST00000310301 CCDC141Q6ZP82 1450 aa10.35□□□□□ -0.75
VPS41-202ENST00000310301 NUTM2FA1L443 756 aa10.35□□□□□ -0.75
VPS41-202ENST00000310301 CNTLNQ9NXG0 1405 aa10.35□□□□□ -0.75
VPS41-202ENST00000310301 UGGT2Q9NYU1 1516 aa10.35□□□□□ -0.75
VPS41-202ENST00000310301 EVC2Q86UK5 1308 aa10.34□□□□□ -0.75
VPS41-202ENST00000310301 GBP4Q96PP9 640 aa10.34□□□□□ -0.75
VPS41-202ENST00000310301 TRAK1Q9UPV9 953 aa10.34□□□□□ -0.75
VPS41-202ENST00000310301 RPGRIP1LQ68CZ1 1315 aa10.34□□□□□ -0.75
VPS41-202ENST00000310301 PTMSP20962 102 aa10.34□□□□□ -0.75
VPS41-202ENST00000310301 IPO9Q96P70 1041 aaKnown RBP10.34□□□□□ -0.75
VPS41-202ENST00000310301 SLKQ9H2G2 1235 aaPredicted RBP10.34□□□□□ -0.75
VPS41-202ENST00000310301 PLCH2O75038 1416 aa10.34□□□□□ -0.75
VPS41-202ENST00000310301 AMPHP49418 695 aa10.33□□□□□ -0.76
VPS41-202ENST00000310301 FGD1P98174 961 aa10.33□□□□□ -0.76
VPS41-202ENST00000310301 ZNF518AQ6AHZ1 1483 aa10.33□□□□□ -0.76
VPS41-202ENST00000310301 MORC1Q86VD1 984 aa10.32□□□□□ -0.76
VPS41-202ENST00000310301 NAP1L2Q9ULW6 460 aaPredicted RBP10.32□□□□□ -0.76
VPS41-202ENST00000310301 CEBPAP49715 358 aaPredicted RBP10.32□□□□□ -0.76
VPS41-202ENST00000310301 KCNJ4P48050 445 aa10.31□□□□□ -0.76
VPS41-202ENST00000310301 TNRQ92752 1358 aa10.31□□□□□ -0.76
VPS41-202ENST00000310301 MS4A1P11836 297 aa10.31□□□□□ -0.76
VPS41-202ENST00000310301 CDK13Q14004 1512 aaKnown RBP10.31□□□□□ -0.76
VPS41-202ENST00000310301 CHMP4BQ9H444 224 aaKnown RBP10.31□□□□□ -0.76
VPS41-202ENST00000310301 ATP10BO94823 1461 aa10.31□□□□□ -0.76
VPS41-202ENST00000310301 RRBP1Q9P2E9 1410 aaKnown RBP10.31□□□□□ -0.76
VPS41-202ENST00000310301 RTF1Q92541 710 aaKnown RBP10.3□□□□□ -0.76
VPS41-202ENST00000310301 UHRF1BP1Q6BDS2 1440 aa10.3□□□□□ -0.76
VPS41-202ENST00000310301 CCER2I3L3R5 266 aa10.3□□□□□ -0.76
VPS41-202ENST00000310301 ESCO1Q5FWF5 840 aa10.3□□□□□ -0.76
Retrieved 100 of 20,778 RNA–protein pairs in 89.9 ms