RNA–Protein interactions for RNA: ENST00000309428.9

RETREG3-201, Transcript of reticulophagy regulator family member 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene RETREG3, Length 3,759 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RETREG3-201ENST00000309428 KIAA1107Q9UPP5 1409 aa16.63■□□□□ 0.25
RETREG3-201ENST00000309428 TMF1P82094 1093 aa16.62■□□□□ 0.25
RETREG3-201ENST00000309428 EFCAB2Q5VUJ9 269 aa16.62■□□□□ 0.25
RETREG3-201ENST00000309428 DENND4BO75064 1496 aaPredicted RBP16.62■□□□□ 0.25
RETREG3-201ENST00000309428 NPM1P06748 294 aaKnown RBP eCLIP16.62■□□□□ 0.25
RETREG3-201ENST00000309428 RCAN3Q9UKA8 241 aa16.62■□□□□ 0.25
RETREG3-201ENST00000309428 RRP7AQ9Y3A4 280 aaKnown RBP16.62■□□□□ 0.25
RETREG3-201ENST00000309428 SPAG9O60271 1321 aaKnown RBP16.62■□□□□ 0.25
RETREG3-201ENST00000309428 LRRIQ1Q96JM4 1722 aa16.62■□□□□ 0.25
RETREG3-201ENST00000309428 TRAK1Q9UPV9 953 aa16.61■□□□□ 0.25
RETREG3-201ENST00000309428 SAMD9Q5K651 1589 aa16.61■□□□□ 0.25
RETREG3-201ENST00000309428 PNISRQ8TF01 805 aaKnown RBP16.61■□□□□ 0.25
RETREG3-201ENST00000309428 WDR62O43379 1518 aa16.6■□□□□ 0.25
RETREG3-201ENST00000309428 MLECQ14165 292 aa16.6■□□□□ 0.25
RETREG3-201ENST00000309428 RPRD2Q5VT52 1461 aaKnown RBP16.6■□□□□ 0.25
RETREG3-201ENST00000309428 TARBP1Q13395 1621 aaKnown RBP16.6■□□□□ 0.25
RETREG3-201ENST00000309428 PLEKHG5O94827 1062 aa16.6■□□□□ 0.25
RETREG3-201ENST00000309428 ADAMTS12P58397 1594 aa16.59■□□□□ 0.25
RETREG3-201ENST00000309428 PPM1GO15355 546 aaPredicted RBP16.59■□□□□ 0.25
RETREG3-201ENST00000309428 KTN1Q86UP2 1357 aaKnown RBP16.59■□□□□ 0.25
RETREG3-201ENST00000309428 TMEM132EQ6IEE7 984 aa16.59■□□□□ 0.25
RETREG3-201ENST00000309428 FRAT1Q92837 279 aaPredicted RBP16.58■□□□□ 0.24
RETREG3-201ENST00000309428 CFAP70Q5T0N1 1121 aa16.57■□□□□ 0.24
RETREG3-201ENST00000309428 ARID4BQ4LE39 1312 aaPredicted RBP16.57■□□□□ 0.24
RETREG3-201ENST00000309428 KIF14Q15058 1648 aa16.57■□□□□ 0.24
RETREG3-201ENST00000309428 NLRP13Q86W25 1043 aa16.56■□□□□ 0.24
RETREG3-201ENST00000309428 ATP10BO94823 1461 aa16.56■□□□□ 0.24
RETREG3-201ENST00000309428 MYBBP1AQ9BQG0 1328 aaKnown RBP16.56■□□□□ 0.24
RETREG3-201ENST00000309428 ERICH6BQ5W0A0 696 aa16.55■□□□□ 0.24
RETREG3-201ENST00000309428 SPRYD3Q8NCJ5 442 aa16.55■□□□□ 0.24
RETREG3-201ENST00000309428 BCL2L13Q9BXK5 485 aa16.55■□□□□ 0.24
RETREG3-201ENST00000309428 ADAMTS8Q9UP79 889 aa16.55■□□□□ 0.24
RETREG3-201ENST00000309428 ARHGAP5Q13017 1502 aa16.55■□□□□ 0.24
RETREG3-201ENST00000309428 STAG3Q9UJ98 1225 aa16.54■□□□□ 0.24
RETREG3-201ENST00000309428 MAGI1Q96QZ7 1491 aaPredicted RBP16.54■□□□□ 0.24
RETREG3-201ENST00000309428 PBRM1Q86U86 1689 aa16.54■□□□□ 0.24
RETREG3-201ENST00000309428 SYNJ2O15056 1496 aa16.54■□□□□ 0.24
RETREG3-201ENST00000309428 PDE4AP27815 886 aa16.53■□□□□ 0.24
RETREG3-201ENST00000309428 KIAA0556O60303 1618 aa16.53■□□□□ 0.24
RETREG3-201ENST00000309428 EIF4G3O43432 1585 aaKnown RBP16.53■□□□□ 0.24
RETREG3-201ENST00000309428 BRPF3Q9ULD4 1205 aa16.53■□□□□ 0.24
RETREG3-201ENST00000309428 PZPP20742 1482 aa16.52■□□□□ 0.24
RETREG3-201ENST00000309428 ROCK1Q13464 1354 aa16.52■□□□□ 0.24
RETREG3-201ENST00000309428 RAPGEF6Q8TEU7 1601 aa16.52■□□□□ 0.24
RETREG3-201ENST00000309428 CRBNQ96SW2 442 aa16.52■□□□□ 0.23
RETREG3-201ENST00000309428 DDRGK1Q96HY6 314 aa16.5■□□□□ 0.23
RETREG3-201ENST00000309428 PLEKHH2Q8IVE3 1493 aa16.5■□□□□ 0.23
RETREG3-201ENST00000309428 RALBP1Q15311 655 aa16.5■□□□□ 0.23
RETREG3-201ENST00000309428 SLKQ9H2G2 1235 aaPredicted RBP16.5■□□□□ 0.23
RETREG3-201ENST00000309428 TCOF1Q13428 1488 aaKnown RBP16.5■□□□□ 0.23
RETREG3-201ENST00000309428 APAF1O14727 1248 aa16.49■□□□□ 0.23
RETREG3-201ENST00000309428 C20orf194Q5TEA3 1177 aa16.49■□□□□ 0.23
RETREG3-201ENST00000309428 CLUAP1Q96AJ1 413 aa16.49■□□□□ 0.23
RETREG3-201ENST00000309428 RRP1P56182 461 aaKnown RBP16.49■□□□□ 0.23
RETREG3-201ENST00000309428 DISP3Q9P2K9 1392 aa16.47■□□□□ 0.23
RETREG3-201ENST00000309428 TEX14Q8IWB6 1497 aa16.47■□□□□ 0.23
RETREG3-201ENST00000309428 U2SURPO15042 1029 aaKnown RBP16.47■□□□□ 0.23
RETREG3-201ENST00000309428 SOX12O15370 315 aa16.47■□□□□ 0.23
RETREG3-201ENST00000309428 GZF1Q9H116 711 aaPredicted RBP16.45■□□□□ 0.22
RETREG3-201ENST00000309428 CEP170Q5SW79 1584 aa16.45■□□□□ 0.22
RETREG3-201ENST00000309428 NAP1L5Q96NT1 182 aaPredicted RBP16.45■□□□□ 0.22
RETREG3-201ENST00000309428 KDM5BQ9UGL1 1544 aa16.44■□□□□ 0.22
RETREG3-201ENST00000309428 SCAPERQ9BY12 1400 aa16.44■□□□□ 0.22
RETREG3-201ENST00000309428 DHX29Q7Z478 1369 aaKnown RBP16.44■□□□□ 0.22
RETREG3-201ENST00000309428 NUTM2FA1L443 756 aa16.43■□□□□ 0.22
RETREG3-201ENST00000309428 RAPGEF3O95398 923 aa16.43■□□□□ 0.22
RETREG3-201ENST00000309428 TCERG1O14776 1098 aaKnown RBP16.43■□□□□ 0.22
RETREG3-201ENST00000309428 SLC24A1O60721 1099 aa16.42■□□□□ 0.22
RETREG3-201ENST00000309428 UPF2Q9HAU5 1272 aaKnown RBP16.41■□□□□ 0.22
RETREG3-201ENST00000309428 SRPK2P78362 688 aaKnown RBP16.41■□□□□ 0.22
RETREG3-201ENST00000309428 CYB5RLQ6IPT4 315 aa16.41■□□□□ 0.22
RETREG3-201ENST00000309428 MORC1Q86VD1 984 aa16.41■□□□□ 0.22
RETREG3-201ENST00000309428 SLC12A5Q9H2X9 1139 aa16.41■□□□□ 0.22
RETREG3-201ENST00000309428 HSP90AA1P07900 732 aaKnown RBP16.4■□□□□ 0.22
RETREG3-201ENST00000309428 GOLGA6L2Q8N9W4 650 aaPredicted RBP16.4■□□□□ 0.22
RETREG3-201ENST00000309428 WASHC2CQ9Y4E1 1318 aa16.4■□□□□ 0.22
RETREG3-201ENST00000309428 SYCP2Q9BX26 1530 aa16.38■□□□□ 0.21
RETREG3-201ENST00000309428 RSPH4AQ5TD94 716 aa16.38■□□□□ 0.21
RETREG3-201ENST00000309428 BCAR3O75815 825 aa16.38■□□□□ 0.21
RETREG3-201ENST00000309428 PPP2R1AP30153 589 aa16.38■□□□□ 0.21
RETREG3-201ENST00000309428 GSE1Q14687 1217 aa16.37■□□□□ 0.21
RETREG3-201ENST00000309428 DNMT1P26358 1616 aaKnown RBP16.37■□□□□ 0.21
RETREG3-201ENST00000309428 ADGRF5Q8IZF2 1346 aa16.37■□□□□ 0.21
RETREG3-201ENST00000309428 SPATA31E1Q6ZUB1 1445 aa16.36■□□□□ 0.21
RETREG3-201ENST00000309428 U2AF1L5P0DN76 240 aaPredicted RBP16.36■□□□□ 0.21
RETREG3-201ENST00000309428 U2AF1Q01081 240 aaKnown RBP eCLIP16.36■□□□□ 0.21
RETREG3-201ENST00000309428 CCDC141Q6ZP82 1450 aa16.35■□□□□ 0.21
RETREG3-201ENST00000309428 CABP2Q9NPB3 220 aa16.35■□□□□ 0.21
RETREG3-201ENST00000309428 GOLGA2Q08379 1002 aa16.35■□□□□ 0.21
RETREG3-201ENST00000309428 TESK2Q96S53 571 aa16.35■□□□□ 0.21
RETREG3-201ENST00000309428 POGKQ9P215 609 aa16.35■□□□□ 0.21
RETREG3-201ENST00000309428 MINK1Q8N4C8 1332 aaPredicted RBP16.34■□□□□ 0.21
RETREG3-201ENST00000309428 FBLN1P23142 703 aa16.34■□□□□ 0.21
RETREG3-201ENST00000309428 COG6Q9Y2V7 657 aa16.34■□□□□ 0.21
RETREG3-201ENST00000309428 KANK1Q14678 1352 aa16.34■□□□□ 0.21
RETREG3-201ENST00000309428 SUGP2Q8IX01 1082 aaKnown RBP eCLIP16.34■□□□□ 0.21
RETREG3-201ENST00000309428 TRAPPC8Q9Y2L5 1435 aa16.34■□□□□ 0.21
RETREG3-201ENST00000309428 NFKBIBQ15653 356 aa16.33■□□□□ 0.21
RETREG3-201ENST00000309428 PANK1Q8TE04 598 aa16.32■□□□□ 0.2
RETREG3-201ENST00000309428 CDCA8Q53HL2 280 aa16.32■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 26.1 ms