RNA–Protein interactions for RNA: ENST00000296682.3

PRDM9-201, Transcript of PR/SET domain 9, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PRDM9, Length 3,691 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRDM9-201ENST00000296682 NBPF8Q3BBV2 869 aa12.86□□□□□ -0.35
PRDM9-201ENST00000296682 C9orf84Q5VXU9 1444 aa12.86□□□□□ -0.35
PRDM9-201ENST00000296682 SUPT16HQ9Y5B9 1047 aaKnown RBP12.86□□□□□ -0.35
PRDM9-201ENST00000296682 EIF2AK4Q9P2K8 1649 aaKnown RBP12.86□□□□□ -0.35
PRDM9-201ENST00000296682 WDR7Q9Y4E6 1490 aa12.86□□□□□ -0.35
PRDM9-201ENST00000296682 RALGAPBQ86X10 1494 aa12.85□□□□□ -0.35
PRDM9-201ENST00000296682 INO80Q9ULG1 1556 aaPredicted RBP12.84□□□□□ -0.35
PRDM9-201ENST00000296682 CARD11Q9BXL7 1154 aa12.84□□□□□ -0.35
PRDM9-201ENST00000296682 ANKRD30AQ9BXX3 1397 aa12.83□□□□□ -0.36
PRDM9-201ENST00000296682 FAM135AQ9P2D6 1515 aa12.82□□□□□ -0.36
PRDM9-201ENST00000296682 C11orf95C9JLR9 678 aaPredicted RBP12.82□□□□□ -0.36
PRDM9-201ENST00000296682 CEP152O94986 1710 aa12.82□□□□□ -0.36
PRDM9-201ENST00000296682 DUOX2Q9NRD8 1548 aa12.82□□□□□ -0.36
PRDM9-201ENST00000296682 ANKRD50Q9ULJ7 1429 aa12.82□□□□□ -0.36
PRDM9-201ENST00000296682 CHGAP10645 457 aaKnown RBP12.81□□□□□ -0.36
PRDM9-201ENST00000296682 WASHC2AQ641Q2 1341 aa12.81□□□□□ -0.36
PRDM9-201ENST00000296682 ERBINQ96RT1 1412 aa12.8□□□□□ -0.36
PRDM9-201ENST00000296682 KIAA1210Q9ULL0 1709 aa12.8□□□□□ -0.36
PRDM9-201ENST00000296682 RSPH4AQ5TD94 716 aa12.8□□□□□ -0.36
PRDM9-201ENST00000296682 CCDC184Q52MB2 194 aa12.8□□□□□ -0.36
PRDM9-201ENST00000296682 SYCP2Q9BX26 1530 aa12.8□□□□□ -0.36
PRDM9-201ENST00000296682 IFT172Q9UG01 1749 aa12.79□□□□□ -0.36
PRDM9-201ENST00000296682 CNTLNQ9NXG0 1405 aa12.79□□□□□ -0.36
PRDM9-201ENST00000296682 RTEL1-TNFRSF6BF6WH68 1400 aa12.78□□□□□ -0.36
PRDM9-201ENST00000296682 PLCH2O75038 1416 aa12.78□□□□□ -0.36
PRDM9-201ENST00000296682 ARID4BQ4LE39 1312 aaPredicted RBP12.78□□□□□ -0.36
PRDM9-201ENST00000296682 SPHKAPQ2M3C7 1700 aa12.78□□□□□ -0.36
PRDM9-201ENST00000296682 MYT1Q01538 1121 aa12.77□□□□□ -0.36
PRDM9-201ENST00000296682 ZFYVE16Q7Z3T8 1539 aa12.77□□□□□ -0.36
PRDM9-201ENST00000296682 PRDM15P57071 1507 aaPredicted RBP12.77□□□□□ -0.37
PRDM9-201ENST00000296682 MROH1Q8NDA8 1641 aa12.76□□□□□ -0.37
PRDM9-201ENST00000296682 PLA2R1Q13018 1463 aa12.75□□□□□ -0.37
PRDM9-201ENST00000296682 IQGAP1P46940 1657 aa12.75□□□□□ -0.37
PRDM9-201ENST00000296682 TET3O43151 1660 aa12.75□□□□□ -0.37
PRDM9-201ENST00000296682 AFAP1Q8N556 730 aa12.74□□□□□ -0.37
PRDM9-201ENST00000296682 NPM1P06748 294 aaKnown RBP eCLIP12.74□□□□□ -0.37
PRDM9-201ENST00000296682 GPRASP1Q5JY77 1395 aa12.74□□□□□ -0.37
PRDM9-201ENST00000296682 ST20-MTHFSA0A0A6YYL1 179 aa12.74□□□□□ -0.37
PRDM9-201ENST00000296682 TMC1Q8TDI8 760 aa12.73□□□□□ -0.37
PRDM9-201ENST00000296682 CCDC7Q96M83 1385 aa12.72□□□□□ -0.37
PRDM9-201ENST00000296682 TRPM2O94759 1503 aa12.72□□□□□ -0.37
PRDM9-201ENST00000296682 KIF15Q9NS87 1388 aa12.71□□□□□ -0.37
PRDM9-201ENST00000296682 ZMYM4Q5VZL5 1548 aa12.71□□□□□ -0.37
PRDM9-201ENST00000296682 CFAP74Q9C0B2 1584 aa12.71□□□□□ -0.37
PRDM9-201ENST00000296682 LMTK2Q8IWU2 1503 aa12.7□□□□□ -0.38
PRDM9-201ENST00000296682 MADDQ8WXG6 1647 aa12.7□□□□□ -0.38
PRDM9-201ENST00000296682 KIF7Q2M1P5 1343 aa12.7□□□□□ -0.38
PRDM9-201ENST00000296682 EFCAB2Q5VUJ9 269 aa12.7□□□□□ -0.38
PRDM9-201ENST00000296682 ARHGAP5Q13017 1502 aa12.7□□□□□ -0.38
PRDM9-201ENST00000296682 DHX29Q7Z478 1369 aaKnown RBP12.69□□□□□ -0.38
PRDM9-201ENST00000296682 PTPRTO14522 1441 aa12.69□□□□□ -0.38
PRDM9-201ENST00000296682 CC2D1BQ5T0F9 858 aaKnown RBP12.69□□□□□ -0.38
PRDM9-201ENST00000296682 PRKRIP1Q9H875 184 aaPredicted RBP12.68□□□□□ -0.38
PRDM9-201ENST00000296682 NBPF1Q3BBV0 1214 aa12.68□□□□□ -0.38
PRDM9-201ENST00000296682 MYO3AQ8NEV4 1616 aa12.67□□□□□ -0.38
PRDM9-201ENST00000296682 KIF3BO15066 747 aa12.67□□□□□ -0.38
PRDM9-201ENST00000296682 KIDINS220Q9ULH0 1771 aa12.67□□□□□ -0.38
PRDM9-201ENST00000296682 PRAG1Q86YV5 1406 aa12.66□□□□□ -0.38
PRDM9-201ENST00000296682 GGT6Q6P531 493 aa12.66□□□□□ -0.38
PRDM9-201ENST00000296682 USP47Q96K76 1375 aa12.65□□□□□ -0.38
PRDM9-201ENST00000296682 INSRP06213 1382 aa12.64□□□□□ -0.39
PRDM9-201ENST00000296682 NUTM2DQ5VT03 806 aaPredicted RBP12.64□□□□□ -0.39
PRDM9-201ENST00000296682 A2MP01023 1474 aa12.64□□□□□ -0.39
PRDM9-201ENST00000296682 ROCK2O75116 1388 aaKnown RBP12.64□□□□□ -0.39
PRDM9-201ENST00000296682 SPAG9O60271 1321 aaKnown RBP12.64□□□□□ -0.39
PRDM9-201ENST00000296682 KTN1Q86UP2 1357 aaKnown RBP12.62□□□□□ -0.39
PRDM9-201ENST00000296682 ATP7AQ04656 1500 aa12.62□□□□□ -0.39
PRDM9-201ENST00000296682 CLTCL1P53675 1640 aa12.62□□□□□ -0.39
PRDM9-201ENST00000296682 PLPPR3Q6T4P5 718 aa12.62□□□□□ -0.39
PRDM9-201ENST00000296682 MYOM1P52179 1685 aa12.62□□□□□ -0.39
PRDM9-201ENST00000296682 NRXN1Q9ULB1 1477 aa12.62□□□□□ -0.39
PRDM9-201ENST00000296682 ZC3H13Q5T200 1668 aaKnown RBP12.62□□□□□ -0.39
PRDM9-201ENST00000296682 B4GALNT3Q6L9W6 998 aa12.59□□□□□ -0.39
PRDM9-201ENST00000296682 SCAPERQ9BY12 1400 aa12.59□□□□□ -0.39
PRDM9-201ENST00000296682 PIK3C2BO00750 1634 aa12.59□□□□□ -0.39
PRDM9-201ENST00000296682 EFCAB6Q5THR3 1501 aa12.58□□□□□ -0.4
PRDM9-201ENST00000296682 MAP3K4Q9Y6R4 1608 aa12.58□□□□□ -0.4
PRDM9-201ENST00000296682 CCDC144AA2RUR9 1427 aa12.58□□□□□ -0.4
PRDM9-201ENST00000296682 COL17A1Q9UMD9 1497 aaPredicted RBP12.58□□□□□ -0.4
PRDM9-201ENST00000296682 FRMPD1Q5SYB0 1578 aa12.58□□□□□ -0.4
PRDM9-201ENST00000296682 CYB5RLQ6IPT4 315 aa12.58□□□□□ -0.4
PRDM9-201ENST00000296682 TRAPPC8Q9Y2L5 1435 aa12.57□□□□□ -0.4
PRDM9-201ENST00000296682 MYOM2P54296 1465 aa12.57□□□□□ -0.4
PRDM9-201ENST00000296682 KIF1BO60333 1816 aa12.57□□□□□ -0.4
PRDM9-201ENST00000296682 PPRC1Q5VV67 1664 aaKnown RBP12.56□□□□□ -0.4
PRDM9-201ENST00000296682 ZNF518AQ6AHZ1 1483 aa12.56□□□□□ -0.4
PRDM9-201ENST00000296682 PPLO60437 1756 aa12.56□□□□□ -0.4
PRDM9-201ENST00000296682 SETBP1Q9Y6X0 1596 aa12.56□□□□□ -0.4
PRDM9-201ENST00000296682 TNNT2P45379 298 aaPredicted RBP12.56□□□□□ -0.4
PRDM9-201ENST00000296682 SAFB2Q14151 953 aaKnown RBP eCLIP12.56□□□□□ -0.4
PRDM9-201ENST00000296682 GLI2P10070 1586 aa12.56□□□□□ -0.4
PRDM9-201ENST00000296682 RICTORQ6R327 1708 aa12.56□□□□□ -0.4
PRDM9-201ENST00000296682 MROH2AA6NES4 1674 aa12.55□□□□□ -0.4
PRDM9-201ENST00000296682 OSCARQ8IYS5 282 aa12.55□□□□□ -0.4
PRDM9-201ENST00000296682 TSHZ2Q9NRE2 1034 aa12.55□□□□□ -0.4
PRDM9-201ENST00000296682 SYNMO15061 1565 aa12.55□□□□□ -0.4
PRDM9-201ENST00000296682 HECW2Q9P2P5 1572 aa12.54□□□□□ -0.4
PRDM9-201ENST00000296682 LRPPRCP42704 1394 aaKnown RBP12.54□□□□□ -0.4
PRDM9-201ENST00000296682 STAC3Q96MF2 364 aa12.53□□□□□ -0.4
PRDM9-201ENST00000296682 MLH3Q9UHC1 1453 aa12.53□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 10.7 ms