RNA–Protein interactions for RNA: ENST00000296581.10

LSM6-201, Transcript of LSM6 homolog, U6 small nuclear RNA and mRNA degradation associated, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LSM6, Length 2,259 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM6-201ENST00000296581 HECW2Q9P2P5 1572 aa22.35■■□□□ 1.17
LSM6-201ENST00000296581 FAM69CQ0P6D2 419 aa22.34■■□□□ 1.17
LSM6-201ENST00000296581 DHX29Q7Z478 1369 aaKnown RBP22.34■■□□□ 1.17
LSM6-201ENST00000296581 TEX14Q8IWB6 1497 aa22.32■■□□□ 1.16
LSM6-201ENST00000296581 PPRC1Q5VV67 1664 aaKnown RBP22.32■■□□□ 1.16
LSM6-201ENST00000296581 RICTORQ6R327 1708 aa22.32■■□□□ 1.16
LSM6-201ENST00000296581 GRWD1Q9BQ67 446 aaKnown RBP eCLIP22.29■■□□□ 1.161e-6■■■■□ 22.6
LSM6-201ENST00000296581 MYT1LQ9UL68 1186 aa22.29■■□□□ 1.16
LSM6-201ENST00000296581 KIF13AQ9H1H9 1805 aa22.28■■□□□ 1.16
LSM6-201ENST00000296581 L3MBTL2Q969R5 705 aa22.28■■□□□ 1.16
LSM6-201ENST00000296581 VWDEQ8N2E2 1590 aa22.28■■□□□ 1.16
LSM6-201ENST00000296581 A2MP01023 1474 aa22.27■■□□□ 1.16
LSM6-201ENST00000296581 ABCA6Q8N139 1617 aa22.26■■□□□ 1.15
LSM6-201ENST00000296581 PRDM15P57071 1507 aaPredicted RBP22.26■■□□□ 1.15
LSM6-201ENST00000296581 TSPOAP1O95153 1857 aa22.26■■□□□ 1.15
LSM6-201ENST00000296581 MROH1Q8NDA8 1641 aa22.25■■□□□ 1.15
LSM6-201ENST00000296581 FRMPD1Q5SYB0 1578 aa22.24■■□□□ 1.15
LSM6-201ENST00000296581 DIEXFQ68CQ4 756 aaKnown RBP22.24■■□□□ 1.15
LSM6-201ENST00000296581 BCORL1Q5H9F3 1711 aa22.24■■□□□ 1.15
LSM6-201ENST00000296581 RAPGEF3O95398 923 aa22.24■■□□□ 1.15
LSM6-201ENST00000296581 ATP10AO60312 1499 aa22.23■■□□□ 1.15
LSM6-201ENST00000296581 RNF17Q9BXT8 1623 aaKnown RBP22.23■■□□□ 1.15
LSM6-201ENST00000296581 PLA2R1Q13018 1463 aa22.22■■□□□ 1.15
LSM6-201ENST00000296581 TET3O43151 1660 aa22.22■■□□□ 1.15
LSM6-201ENST00000296581 DIP2CQ9Y2E4 1556 aa22.21■■□□□ 1.15
LSM6-201ENST00000296581 KIF3BO15066 747 aa22.21■■□□□ 1.15
LSM6-201ENST00000296581 ZMYM4Q5VZL5 1548 aa22.21■■□□□ 1.15
LSM6-201ENST00000296581 E9PCH4 1651 aa22.2■■□□□ 1.15
LSM6-201ENST00000296581 KANK1Q14678 1352 aa22.2■■□□□ 1.14
LSM6-201ENST00000296581 CCDC144AA2RUR9 1427 aa22.16■■□□□ 1.14
LSM6-201ENST00000296581 LMTK2Q8IWU2 1503 aa22.15■■□□□ 1.14
LSM6-201ENST00000296581 SPHKAPQ2M3C7 1700 aa22.12■■□□□ 1.13
LSM6-201ENST00000296581 PTPRTO14522 1441 aa22.12■■□□□ 1.13
LSM6-201ENST00000296581 YEATS2Q9ULM3 1422 aa22.12■■□□□ 1.13
LSM6-201ENST00000296581 NBPF8Q3BBV2 869 aa22.11■■□□□ 1.13
LSM6-201ENST00000296581 TRPM2O94759 1503 aa22.11■■□□□ 1.13
LSM6-201ENST00000296581 EFCAB6Q5THR3 1501 aa22.11■■□□□ 1.13
LSM6-201ENST00000296581 UHRF1BP1Q6BDS2 1440 aa22.1■■□□□ 1.13
LSM6-201ENST00000296581 CEP152O94986 1710 aa22.1■■□□□ 1.13
LSM6-201ENST00000296581 REREQ9P2R6 1566 aa22.05■■□□□ 1.12
LSM6-201ENST00000296581 ABCC3O15438 1527 aa22.03■■□□□ 1.12
LSM6-201ENST00000296581 COL17A1Q9UMD9 1497 aaPredicted RBP22.03■■□□□ 1.12
LSM6-201ENST00000296581 CLTCL1P53675 1640 aa22.03■■□□□ 1.12
LSM6-201ENST00000296581 SPATA31E1Q6ZUB1 1445 aa22.01■■□□□ 1.11
LSM6-201ENST00000296581 GGT6Q6P531 493 aa22.01■■□□□ 1.11
LSM6-201ENST00000296581 ZC3H13Q5T200 1668 aaKnown RBP22■■□□□ 1.11
LSM6-201ENST00000296581 RALGAPBQ86X10 1494 aa22■■□□□ 1.11
LSM6-201ENST00000296581 CAMSAP1Q5T5Y3 1602 aa21.99■■□□□ 1.11
LSM6-201ENST00000296581 EIF4G2P78344 907 aaKnown RBP eCLIP21.99■■□□□ 1.11
LSM6-201ENST00000296581 DCAF11Q8TEB1 546 aa21.99■■□□□ 1.11
LSM6-201ENST00000296581 NEURL4Q96JN8 1562 aa21.99■■□□□ 1.11
LSM6-201ENST00000296581 HIRIP3Q9BW71 556 aaPredicted RBP21.98■■□□□ 1.11
LSM6-201ENST00000296581 AGLP35573 1532 aa21.98■■□□□ 1.11
LSM6-201ENST00000296581 HSPA5P11021 654 aaKnown RBP21.97■■□□□ 1.11
LSM6-201ENST00000296581 ARHGEF40Q8TER5 1519 aa21.97■■□□□ 1.11
LSM6-201ENST00000296581 NPATQ14207 1427 aa21.96■■□□□ 1.11
LSM6-201ENST00000296581 WASHC2CQ9Y4E1 1318 aa21.95■■□□□ 1.1
LSM6-201ENST00000296581 PRAG1Q86YV5 1406 aa21.95■■□□□ 1.1
LSM6-201ENST00000296581 RGL3Q3MIN7 710 aa21.94■■□□□ 1.1
LSM6-201ENST00000296581 ZNF326Q5BKZ1 582 aaKnown RBP21.94■■□□□ 1.1
LSM6-201ENST00000296581 KDM2AQ9Y2K7 1162 aa21.94■■□□□ 1.1
LSM6-201ENST00000296581 ARHGAP31Q2M1Z3 1444 aa21.93■■□□□ 1.1
LSM6-201ENST00000296581 TRPM1Q7Z4N2 1603 aa21.92■■□□□ 1.1
LSM6-201ENST00000296581 KIF1BO60333 1816 aa21.91■■□□□ 1.1
LSM6-201ENST00000296581 CNTLNQ9NXG0 1405 aa21.91■■□□□ 1.1
LSM6-201ENST00000296581 UGGT1Q9NYU2 1555 aa21.9■■□□□ 1.1
LSM6-201ENST00000296581 SIGLEC1Q9BZZ2 1709 aa21.9■■□□□ 1.1
LSM6-201ENST00000296581 MIER1Q8N108 512 aa21.89■■□□□ 1.09
LSM6-201ENST00000296581 NOS1P29475 1434 aa21.88■■□□□ 1.09
LSM6-201ENST00000296581 STAC3Q96MF2 364 aa21.87■■□□□ 1.09
LSM6-201ENST00000296581 CFAP65Q6ZU64 1925 aaKnown RBP21.87■■□□□ 1.09
LSM6-201ENST00000296581 USP47Q96K76 1375 aa21.86■■□□□ 1.09
LSM6-201ENST00000296581 DNAJC5Q9H3Z4 198 aa21.86■■□□□ 1.09
LSM6-201ENST00000296581 PPP6R1Q9UPN7 881 aa21.86■■□□□ 1.09
LSM6-201ENST00000296581 LAMC1P11047 1609 aa21.85■■□□□ 1.09
LSM6-201ENST00000296581 POLR1AO95602 1720 aaPredicted RBP21.85■■□□□ 1.09
LSM6-201ENST00000296581 MADDQ8WXG6 1647 aa21.85■■□□□ 1.09
LSM6-201ENST00000296581 DDX10Q13206 875 aaKnown RBP21.85■■□□□ 1.09
LSM6-201ENST00000296581 ADGRB3O60242 1522 aa21.84■■□□□ 1.09
LSM6-201ENST00000296581 GPRASP1Q5JY77 1395 aa21.84■■□□□ 1.09
LSM6-201ENST00000296581 MROH2AA6NES4 1674 aa21.84■■□□□ 1.09
LSM6-201ENST00000296581 PIK3C2BO00750 1634 aa21.84■■□□□ 1.09
LSM6-201ENST00000296581 SYNMO15061 1565 aa21.83■■□□□ 1.09
LSM6-201ENST00000296581 IFT172Q9UG01 1749 aa21.83■■□□□ 1.09
LSM6-201ENST00000296581 CARD11Q9BXL7 1154 aa21.82■■□□□ 1.08
LSM6-201ENST00000296581 ROCK2O75116 1388 aaKnown RBP21.82■■□□□ 1.08
LSM6-201ENST00000296581 WASHC2AQ641Q2 1341 aa21.81■■□□□ 1.08
LSM6-201ENST00000296581 PREX1Q8TCU6 1659 aa21.8■■□□□ 1.08
LSM6-201ENST00000296581 MYOM2P54296 1465 aa21.8■■□□□ 1.08
LSM6-201ENST00000296581 CCDC7Q96M83 1385 aa21.77■■□□□ 1.08
LSM6-201ENST00000296581 CLTCQ00610 1675 aaKnown RBP21.77■■□□□ 1.08
LSM6-201ENST00000296581 KIAA1210Q9ULL0 1709 aa21.76■■□□□ 1.07
LSM6-201ENST00000296581 C11orf95C9JLR9 678 aaPredicted RBP21.76■■□□□ 1.07
LSM6-201ENST00000296581 TRHP20396 242 aaPredicted RBP21.76■■□□□ 1.07
LSM6-201ENST00000296581 NBPF1Q3BBV0 1214 aa21.75■■□□□ 1.07
LSM6-201ENST00000296581 GTF3C3Q9Y5Q9 886 aa21.75■■□□□ 1.07
LSM6-201ENST00000296581 PPLO60437 1756 aa21.74■■□□□ 1.07
LSM6-201ENST00000296581 NRXN1Q9ULB1 1477 aa21.74■■□□□ 1.07
LSM6-201ENST00000296581 ERVK-7P63135 1459 aa21.72■■□□□ 1.07
LSM6-201ENST00000296581 KIF7Q2M1P5 1343 aa21.71■■□□□ 1.07
Retrieved 100 of 20,778 RNA–protein pairs in 15.3 ms