RNA–Protein interactions for RNA: ENST00000295701.9

CNOT9-202, Transcript of CCR4-NOT transcription complex subunit 9, humanhuman

TSL 1 (best) BASIC

Gene CNOT9, Length 1,126 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CNOT9-202ENST00000295701 GPATCH8Q9UKJ3 1502 aaKnown RBP15.11■□□□□ 0.01
CNOT9-202ENST00000295701 ESF1Q9H501 851 aaKnown RBP15.1■□□□□ 0.01
CNOT9-202ENST00000295701 SYCP2Q9BX26 1530 aa15.09■□□□□ 0.01
CNOT9-202ENST00000295701 SUPT6HQ7KZ85 1726 aaKnown RBP15.09■□□□□ 0.01
CNOT9-202ENST00000295701 SPAG9O60271 1321 aaKnown RBP15.07■□□□□ 0
CNOT9-202ENST00000295701 PIP4P2Q8N4L2 257 aa15.05■□□□□ -0
CNOT9-202ENST00000295701 CFDP1Q9UEE9 299 aaPredicted RBP15.05■□□□□ -0
CNOT9-202ENST00000295701 ZNF644Q9H582 1327 aaPredicted RBP15.04■□□□□ -0
CNOT9-202ENST00000295701 ZMYM3Q14202 1370 aa15.03■□□□□ -0
CNOT9-202ENST00000295701 CCNB3Q8WWL7 1395 aa15.03■□□□□ -0
CNOT9-202ENST00000295701 PTPRTO14522 1441 aa15.02■□□□□ -0
CNOT9-202ENST00000295701 CNTLNQ9NXG0 1405 aa15.02■□□□□ -0
CNOT9-202ENST00000295701 ATP7AQ04656 1500 aa15.02□□□□□ -0.01
CNOT9-202ENST00000295701 MTUS2Q5JR59 1369 aa15.01□□□□□ -0.01
CNOT9-202ENST00000295701 CLTCQ00610 1675 aaKnown RBP15.01□□□□□ -0.01
CNOT9-202ENST00000295701 GGT6Q6P531 493 aa15.01□□□□□ -0.01
CNOT9-202ENST00000295701 SPDYE1Q8NFV5 336 aaPredicted RBP15.01□□□□□ -0.01
CNOT9-202ENST00000295701 KIAA1107Q9UPP5 1409 aa15□□□□□ -0.01
CNOT9-202ENST00000295701 MROH2AA6NES4 1674 aa15□□□□□ -0.01
CNOT9-202ENST00000295701 NCKAP5LQ9HCH0 1330 aa15□□□□□ -0.01
CNOT9-202ENST00000295701 A2MP01023 1474 aa15□□□□□ -0.01
CNOT9-202ENST00000295701 NCOA1Q15788 1441 aa15□□□□□ -0.01
CNOT9-202ENST00000295701 INO80Q9ULG1 1556 aaPredicted RBP14.99□□□□□ -0.01
CNOT9-202ENST00000295701 FXR2P51116 673 aaKnown RBP eCLIP14.99□□□□□ -0.01
CNOT9-202ENST00000295701 CAMSAP1Q5T5Y3 1602 aa14.99□□□□□ -0.01
CNOT9-202ENST00000295701 PLXNC1O60486 1568 aa14.98□□□□□ -0.01
CNOT9-202ENST00000295701 CLEC11AQ9Y240 323 aa14.98□□□□□ -0.01
CNOT9-202ENST00000295701 LTBP4Q8N2S1 1624 aa14.98□□□□□ -0.01
CNOT9-202ENST00000295701 TIAM1Q13009 1591 aa14.98□□□□□ -0.01
CNOT9-202ENST00000295701 PLEKHH2Q8IVE3 1493 aa14.97□□□□□ -0.01
CNOT9-202ENST00000295701 NPATQ14207 1427 aa14.96□□□□□ -0.01
CNOT9-202ENST00000295701 MBD5Q9P267 1494 aa14.95□□□□□ -0.02
CNOT9-202ENST00000295701 PTPRKQ15262 1439 aa14.95□□□□□ -0.02
CNOT9-202ENST00000295701 ILDR2Q71H61 639 aa14.94□□□□□ -0.02
CNOT9-202ENST00000295701 ADGBQ8N7X0 1667 aa14.93□□□□□ -0.02
CNOT9-202ENST00000295701 ZNF335Q9H4Z2 1342 aaPredicted RBP14.92□□□□□ -0.02
CNOT9-202ENST00000295701 MYO3AQ8NEV4 1616 aa14.92□□□□□ -0.02
CNOT9-202ENST00000295701 DISP3Q9P2K9 1392 aa14.92□□□□□ -0.02
CNOT9-202ENST00000295701 EHBP1L1Q8N3D4 1523 aa14.92□□□□□ -0.02
CNOT9-202ENST00000295701 CEP162Q5TB80 1403 aa14.92□□□□□ -0.02
CNOT9-202ENST00000295701 FBXO31Q5XUX0 539 aaPredicted RBP14.9□□□□□ -0.02
CNOT9-202ENST00000295701 ZNF142P52746 1687 aaPredicted RBP14.9□□□□□ -0.02
CNOT9-202ENST00000295701 CEP170BQ9Y4F5 1589 aaPredicted RBP14.9□□□□□ -0.02
CNOT9-202ENST00000295701 DHX29Q7Z478 1369 aaKnown RBP14.89□□□□□ -0.03
CNOT9-202ENST00000295701 KIF3BO15066 747 aa14.89□□□□□ -0.03
CNOT9-202ENST00000295701 RTEL1-TNFRSF6BF6WH68 1400 aa14.88□□□□□ -0.03
CNOT9-202ENST00000295701 NCOA2Q15596 1464 aa14.87□□□□□ -0.03
CNOT9-202ENST00000295701 LOC105371045A0A1W2PR82 267 aa14.86□□□□□ -0.03
CNOT9-202ENST00000295701 PKD2Q13563 968 aa14.86□□□□□ -0.03
CNOT9-202ENST00000295701 CAMSAP2Q08AD1 1489 aa14.86□□□□□ -0.03
CNOT9-202ENST00000295701 PLA2R1Q13018 1463 aa14.86□□□□□ -0.03
CNOT9-202ENST00000295701 TCOF1Q13428 1488 aaKnown RBP14.86□□□□□ -0.03
CNOT9-202ENST00000295701 DNMT1P26358 1616 aaKnown RBP14.85□□□□□ -0.03
CNOT9-202ENST00000295701 IQSEC2Q5JU85 1478 aa14.85□□□□□ -0.03
CNOT9-202ENST00000295701 UBAP1LF5GYI3 381 aa14.84□□□□□ -0.03
CNOT9-202ENST00000295701 A2ML1A8K2U0 1454 aa14.83□□□□□ -0.03
CNOT9-202ENST00000295701 CCDC141Q6ZP82 1450 aa14.83□□□□□ -0.03
CNOT9-202ENST00000295701 TNRQ92752 1358 aa14.82□□□□□ -0.04
CNOT9-202ENST00000295701 CFAP65Q6ZU64 1925 aaKnown RBP14.81□□□□□ -0.04
CNOT9-202ENST00000295701 WASHC2CQ9Y4E1 1318 aa14.81□□□□□ -0.04
CNOT9-202ENST00000295701 SPDYE4A6NLX3 237 aa14.8□□□□□ -0.04
CNOT9-202ENST00000295701 RSPH4AQ5TD94 716 aa14.8□□□□□ -0.04
CNOT9-202ENST00000295701 SPATA31D1Q6ZQQ2 1576 aa14.8□□□□□ -0.04
CNOT9-202ENST00000295701 PRKAR2AP13861 404 aaKnown RBP14.79□□□□□ -0.04
CNOT9-202ENST00000295701 KANK4Q5T7N3 995 aaPredicted RBP14.79□□□□□ -0.04
CNOT9-202ENST00000295701 POLR1AO95602 1720 aaPredicted RBP14.78□□□□□ -0.04
CNOT9-202ENST00000295701 NEURL4Q96JN8 1562 aa14.78□□□□□ -0.04
CNOT9-202ENST00000295701 KDM5DQ9BY66 1539 aa14.78□□□□□ -0.04
CNOT9-202ENST00000295701 PZPP20742 1482 aa14.78□□□□□ -0.04
CNOT9-202ENST00000295701 SOCS7O14512 581 aa14.78□□□□□ -0.04
CNOT9-202ENST00000295701 TSPY4P0CV99 314 aa14.78□□□□□ -0.04
CNOT9-202ENST00000295701 TSPY10P0CW01 314 aa14.78□□□□□ -0.04
CNOT9-202ENST00000295701 ARHGEF5Q12774 1597 aa14.77□□□□□ -0.04
CNOT9-202ENST00000295701 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP14.77□□□□□ -0.04
CNOT9-202ENST00000295701 PRR29P0C7W0 189 aa14.77□□□□□ -0.05
CNOT9-202ENST00000295701 LRRC9Q6ZRR7 1453 aa14.76□□□□□ -0.05
CNOT9-202ENST00000295701 MIA2Q96PC5 1412 aa14.76□□□□□ -0.05
CNOT9-202ENST00000295701 VPS8Q8N3P4 1428 aa14.75□□□□□ -0.05
CNOT9-202ENST00000295701 HAX1O00165 279 aa14.74□□□□□ -0.05
CNOT9-202ENST00000295701 PIP4K2BP78356 416 aa14.74□□□□□ -0.05
CNOT9-202ENST00000295701 ANKLE2Q86XL3 938 aa14.74□□□□□ -0.05
CNOT9-202ENST00000295701 THEMISQ8N1K5 641 aaPredicted RBP14.73□□□□□ -0.05
CNOT9-202ENST00000295701 SHANK2Q9UPX8 1470 aa14.73□□□□□ -0.05
CNOT9-202ENST00000295701 UGGT1Q9NYU2 1555 aa14.72□□□□□ -0.05
CNOT9-202ENST00000295701 FAM135AQ9P2D6 1515 aa14.71□□□□□ -0.05
CNOT9-202ENST00000295701 HSPA1LP34931 641 aa14.71□□□□□ -0.05
CNOT9-202ENST00000295701 ABCC3O15438 1527 aa14.71□□□□□ -0.06
CNOT9-202ENST00000295701 RNF17Q9BXT8 1623 aaKnown RBP14.7□□□□□ -0.06
CNOT9-202ENST00000295701 CEP152O94986 1710 aa14.7□□□□□ -0.06
CNOT9-202ENST00000295701 VWDEQ8N2E2 1590 aa14.7□□□□□ -0.06
CNOT9-202ENST00000295701 MAST1Q9Y2H9 1570 aa14.7□□□□□ -0.06
CNOT9-202ENST00000295701 NLRP1Q9C000 1473 aa14.69□□□□□ -0.06
CNOT9-202ENST00000295701 NPHP4O75161 1426 aaPredicted RBP14.69□□□□□ -0.06
CNOT9-202ENST00000295701 MROH1Q8NDA8 1641 aa14.69□□□□□ -0.06
CNOT9-202ENST00000295701 STRCP1A6NGW2 1772 aa14.68□□□□□ -0.06
CNOT9-202ENST00000295701 CPS1P31327 1500 aa14.68□□□□□ -0.06
CNOT9-202ENST00000295701 MYOM3Q5VTT5 1437 aa14.67□□□□□ -0.06
CNOT9-202ENST00000295701 TOM1O60784 492 aa14.67□□□□□ -0.06
CNOT9-202ENST00000295701 MED14O60244 1454 aa14.67□□□□□ -0.06
CNOT9-202ENST00000295701 ERVK-7P63135 1459 aa14.67□□□□□ -0.06
Retrieved 100 of 20,778 RNA–protein pairs in 75.5 ms