RNA–Protein interactions for RNA: ENST00000291842.9

SHKBP1-201, Transcript of SH3KBP1 binding protein 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SHKBP1, Length 2,363 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-201ENST00000291842 IRX6P78412 446 aaPredicted RBP25.2■■□□□ 1.63
SHKBP1-201ENST00000291842 CCDC144AA2RUR9 1427 aa25.2■■□□□ 1.62
SHKBP1-201ENST00000291842 MAST1Q9Y2H9 1570 aa25.19■■□□□ 1.62
SHKBP1-201ENST00000291842 CLASP1Q7Z460 1538 aa25.19■■□□□ 1.62
SHKBP1-201ENST00000291842 PLCH2O75038 1416 aa25.17■■□□□ 1.62
SHKBP1-201ENST00000291842 ROCK2O75116 1388 aaKnown RBP25.17■■□□□ 1.62
SHKBP1-201ENST00000291842 EFCAB2Q5VUJ9 269 aa25.17■■□□□ 1.62
SHKBP1-201ENST00000291842 PLA2R1Q13018 1463 aa25.16■■□□□ 1.62
SHKBP1-201ENST00000291842 UNC13BO14795 1591 aa25.15■■□□□ 1.62
SHKBP1-201ENST00000291842 ARID4BQ4LE39 1312 aaPredicted RBP25.13■■□□□ 1.61
SHKBP1-201ENST00000291842 PLXNC1O60486 1568 aa25.13■■□□□ 1.61
SHKBP1-201ENST00000291842 NBPF1Q3BBV0 1214 aa25.11■■□□□ 1.61
SHKBP1-201ENST00000291842 TRAPPC8Q9Y2L5 1435 aa25.11■■□□□ 1.61
SHKBP1-201ENST00000291842 UHRF1BP1LA0JNW5 1464 aa25.1■■□□□ 1.61
SHKBP1-201ENST00000291842 DUOX2Q9NRD8 1548 aa25.09■■□□□ 1.61
SHKBP1-201ENST00000291842 PRAG1Q86YV5 1406 aa25.09■■□□□ 1.61
SHKBP1-201ENST00000291842 AFAP1Q8N556 730 aa25.08■■□□□ 1.61
SHKBP1-201ENST00000291842 ZBED9Q6R2W3 1325 aa25.08■■□□□ 1.6
SHKBP1-201ENST00000291842 IQGAP3Q86VI3 1631 aa25.07■■□□□ 1.6
SHKBP1-201ENST00000291842 SENP3-EIF4A1A0A087X0R7 540 aa25.07■■□□□ 1.6
SHKBP1-201ENST00000291842 A2MP01023 1474 aa25.05■■□□□ 1.6
SHKBP1-201ENST00000291842 ABCC1P33527 1531 aa25.05■■□□□ 1.6
SHKBP1-201ENST00000291842 ERBINQ96RT1 1412 aa25.04■■□□□ 1.6
SHKBP1-201ENST00000291842 TRPM1Q7Z4N2 1603 aa25.03■■□□□ 1.6
SHKBP1-201ENST00000291842 SPAG9O60271 1321 aaKnown RBP25.02■■□□□ 1.6
SHKBP1-201ENST00000291842 TMC1Q8TDI8 760 aa24.98■■□□□ 1.59
SHKBP1-201ENST00000291842 MAGI2Q86UL8 1455 aa24.98■■□□□ 1.59
SHKBP1-201ENST00000291842 MYT1LQ9UL68 1186 aa24.95■■□□□ 1.58
SHKBP1-201ENST00000291842 PNISRQ8TF01 805 aaKnown RBP24.94■■□□□ 1.58
SHKBP1-201ENST00000291842 WDR7Q9Y4E6 1490 aa24.92■■□□□ 1.58
SHKBP1-201ENST00000291842 GPRASP1Q5JY77 1395 aa24.92■■□□□ 1.58
SHKBP1-201ENST00000291842 ATP10AO60312 1499 aa24.92■■□□□ 1.58
SHKBP1-201ENST00000291842 ZFYVE16Q7Z3T8 1539 aa24.9■■□□□ 1.58
SHKBP1-201ENST00000291842 DISP3Q9P2K9 1392 aa24.89■■□□□ 1.58
SHKBP1-201ENST00000291842 TESK2Q96S53 571 aa24.89■■□□□ 1.57
SHKBP1-201ENST00000291842 FANCAO15360 1455 aa24.89■■□□□ 1.57
SHKBP1-201ENST00000291842 E9PCH4 1651 aa24.89■■□□□ 1.57
SHKBP1-201ENST00000291842 MYBBP1AQ9BQG0 1328 aaKnown RBP24.88■■□□□ 1.57
SHKBP1-201ENST00000291842 RTEL1-TNFRSF6BF6WH68 1400 aa24.87■■□□□ 1.57
SHKBP1-201ENST00000291842 RALBP1Q15311 655 aa24.87■■□□□ 1.57
SHKBP1-201ENST00000291842 PRDM15P57071 1507 aaPredicted RBP24.87■■□□□ 1.57
SHKBP1-201ENST00000291842 ARAP3Q8WWN8 1544 aa24.85■■□□□ 1.57
SHKBP1-201ENST00000291842 KIF3BO15066 747 aa24.84■■□□□ 1.57
SHKBP1-201ENST00000291842 SCAPERQ9BY12 1400 aa24.84■■□□□ 1.57
SHKBP1-201ENST00000291842 EIF2AK4Q9P2K8 1649 aaKnown RBP24.83■■□□□ 1.56
SHKBP1-201ENST00000291842 PER1O15534 1290 aaPredicted RBP24.82■■□□□ 1.56
SHKBP1-201ENST00000291842 PPP4R2Q9NY27 417 aa24.82■■□□□ 1.56
SHKBP1-201ENST00000291842 RBM19Q9Y4C8 960 aaKnown RBP24.82■■□□□ 1.56
SHKBP1-201ENST00000291842 COL17A1Q9UMD9 1497 aaPredicted RBP24.82■■□□□ 1.56
SHKBP1-201ENST00000291842 BRD4O60885 1362 aaPredicted RBP24.82■■□□□ 1.56
SHKBP1-201ENST00000291842 SMG6Q86US8 1419 aaKnown RBP24.81■■□□□ 1.56
SHKBP1-201ENST00000291842 ADGRL1O94910 1474 aa24.81■■□□□ 1.56
SHKBP1-201ENST00000291842 CC2D1BQ5T0F9 858 aaKnown RBP24.81■■□□□ 1.56
SHKBP1-201ENST00000291842 ATP7AQ04656 1500 aa24.81■■□□□ 1.56
SHKBP1-201ENST00000291842 KTN1Q86UP2 1357 aaKnown RBP24.81■■□□□ 1.56
SHKBP1-201ENST00000291842 ASXL2Q76L83 1435 aa24.8■■□□□ 1.56
SHKBP1-201ENST00000291842 NUDCQ9Y266 331 aa24.8■■□□□ 1.56
SHKBP1-201ENST00000291842 LAMC1P11047 1609 aa24.8■■□□□ 1.56
SHKBP1-201ENST00000291842 ABCA9Q8IUA7 1624 aa24.8■■□□□ 1.56
SHKBP1-201ENST00000291842 ERICH6BQ5W0A0 696 aa24.8■■□□□ 1.56
SHKBP1-201ENST00000291842 PANK3Q9H999 370 aa24.8■■□□□ 1.56
SHKBP1-201ENST00000291842 TMF1P82094 1093 aa24.79■■□□□ 1.56
SHKBP1-201ENST00000291842 B4GALNT3Q6L9W6 998 aa24.79■■□□□ 1.56
SHKBP1-201ENST00000291842 LRPPRCP42704 1394 aaKnown RBP24.78■■□□□ 1.56
SHKBP1-201ENST00000291842 PARD3Q8TEW0 1356 aa24.77■■□□□ 1.56
SHKBP1-201ENST00000291842 TRPM2O94759 1503 aa24.76■■□□□ 1.55
SHKBP1-201ENST00000291842 INO80Q9ULG1 1556 aaPredicted RBP24.76■■□□□ 1.55
SHKBP1-201ENST00000291842 KANK1Q14678 1352 aa24.76■■□□□ 1.55
SHKBP1-201ENST00000291842 NLRP13Q86W25 1043 aa24.75■■□□□ 1.55
SHKBP1-201ENST00000291842 SALL2Q9Y467 1007 aaPredicted RBP24.75■■□□□ 1.55
SHKBP1-201ENST00000291842 CLTCL1P53675 1640 aa24.75■■□□□ 1.55
SHKBP1-201ENST00000291842 SPHKAPQ2M3C7 1700 aa24.74■■□□□ 1.55
SHKBP1-201ENST00000291842 DEPDC5O75140 1603 aa24.74■■□□□ 1.55
SHKBP1-201ENST00000291842 PTPRTO14522 1441 aa24.74■■□□□ 1.55
SHKBP1-201ENST00000291842 MADDQ8WXG6 1647 aa24.73■■□□□ 1.55
SHKBP1-201ENST00000291842 RNF17Q9BXT8 1623 aaKnown RBP24.72■■□□□ 1.55
SHKBP1-201ENST00000291842 TET3O43151 1660 aa24.71■■□□□ 1.55
SHKBP1-201ENST00000291842 CEP152O94986 1710 aa24.7■■□□□ 1.54
SHKBP1-201ENST00000291842 NPM1P06748 294 aaKnown RBP eCLIP24.68■■□□□ 1.54
SHKBP1-201ENST00000291842 UGGT1Q9NYU2 1555 aa24.67■■□□□ 1.54
SHKBP1-201ENST00000291842 OSCARQ8IYS5 282 aa24.66■■□□□ 1.54
SHKBP1-201ENST00000291842 VWDEQ8N2E2 1590 aa24.66■■□□□ 1.54
SHKBP1-201ENST00000291842 MROH1Q8NDA8 1641 aa24.64■■□□□ 1.53
SHKBP1-201ENST00000291842 WASHC2CQ9Y4E1 1318 aa24.64■■□□□ 1.53
SHKBP1-201ENST00000291842 IQGAP1P46940 1657 aa24.62■■□□□ 1.53
SHKBP1-201ENST00000291842 RNF123Q5XPI4 1314 aa24.62■■□□□ 1.53
SHKBP1-201ENST00000291842 KIDINS220Q9ULH0 1771 aa24.62■■□□□ 1.53
SHKBP1-201ENST00000291842 CFAP70Q5T0N1 1121 aa24.61■■□□□ 1.53
SHKBP1-201ENST00000291842 SCAF11Q99590 1463 aaKnown RBP24.61■■□□□ 1.53
SHKBP1-201ENST00000291842 ADGRF5Q8IZF2 1346 aa24.59■■□□□ 1.53
SHKBP1-201ENST00000291842 STAC3Q96MF2 364 aa24.59■■□□□ 1.53
SHKBP1-201ENST00000291842 KNSTRNQ9Y448 316 aa24.58■■□□□ 1.53
SHKBP1-201ENST00000291842 ZNF518AQ6AHZ1 1483 aa24.58■■□□□ 1.52
SHKBP1-201ENST00000291842 CD109Q6YHK3 1445 aa24.57■■□□□ 1.52
SHKBP1-201ENST00000291842 CHGAP10645 457 aaKnown RBP24.56■■□□□ 1.52
SHKBP1-201ENST00000291842 GGT6Q6P531 493 aa24.56■■□□□ 1.52
SHKBP1-201ENST00000291842 CDCA7LQ96GN5 454 aa24.54■■□□□ 1.52
SHKBP1-201ENST00000291842 EFCAB6Q5THR3 1501 aa24.54■■□□□ 1.52
SHKBP1-201ENST00000291842 PPRC1Q5VV67 1664 aaKnown RBP24.53■■□□□ 1.52
SHKBP1-201ENST00000291842 CDCA8Q53HL2 280 aa24.53■■□□□ 1.52
Retrieved 100 of 20,778 RNA–protein pairs in 29.2 ms