RNA–Protein interactions for RNA: ENST00000284049.7

CHD1-201, Transcript of chromodomain helicase DNA binding protein 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CHD1, Length 6,457 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD1-201ENST00000284049 SPDYE5A6NIY4 337 aa3.96□□□□□ -1.78
CHD1-201ENST00000284049 BIN2Q9UBW5 565 aaPredicted RBP3.96□□□□□ -1.78
CHD1-201ENST00000284049 PLEKHG3A1L390 1219 aa3.96□□□□□ -1.78
CHD1-201ENST00000284049 SH3D19Q5HYK7 790 aa3.95□□□□□ -1.78
CHD1-201ENST00000284049 NUTM2BA6NNL0 878 aaPredicted RBP3.95□□□□□ -1.78
CHD1-201ENST00000284049 NUTM2EB1AL46 878 aaPredicted RBP3.95□□□□□ -1.78
CHD1-201ENST00000284049 NUTM2DQ5VT03 806 aaPredicted RBP3.95□□□□□ -1.78
CHD1-201ENST00000284049 NUTM2AQ8IVF1 878 aaPredicted RBP3.95□□□□□ -1.78
CHD1-201ENST00000284049 AMOTL2Q9Y2J4 779 aa3.95□□□□□ -1.78
CHD1-201ENST00000284049 SKIV2LQ15477 1246 aaKnown RBP3.95□□□□□ -1.78
CHD1-201ENST00000284049 VRTNQ9H8Y1 702 aa3.95□□□□□ -1.78
CHD1-201ENST00000284049 USTQ9Y2C2 406 aa3.95□□□□□ -1.78
CHD1-201ENST00000284049 SSTR3P32745 418 aaPredicted RBP3.94□□□□□ -1.78
CHD1-201ENST00000284049 CLK2P49760 499 aaKnown RBP3.94□□□□□ -1.78
CHD1-201ENST00000284049 PDIA6Q15084 440 aa3.94□□□□□ -1.78
CHD1-201ENST00000284049 CDCA8Q53HL2 280 aa3.94□□□□□ -1.78
CHD1-201ENST00000284049 POM121Q96HA1 1249 aa3.94□□□□□ -1.78
CHD1-201ENST00000284049 TSC1Q92574 1164 aa3.94□□□□□ -1.78
CHD1-201ENST00000284049 AP1G2O75843 785 aa3.93□□□□□ -1.78
CHD1-201ENST00000284049 DSG3P32926 999 aa3.93□□□□□ -1.78
CHD1-201ENST00000284049 NUTM1Q86Y26 1132 aa3.93□□□□□ -1.78
CHD1-201ENST00000284049 PROCA1Q8NCQ7 364 aaPredicted RBP3.93□□□□□ -1.78
CHD1-201ENST00000284049 DDX12PQ92771 950 aa3.93□□□□□ -1.78
CHD1-201ENST00000284049 CRISPLD2Q9H0B8 497 aa3.93□□□□□ -1.78
CHD1-201ENST00000284049 PLSCR2Q9NRY7 297 aa3.93□□□□□ -1.78
CHD1-201ENST00000284049 CANXP27824 592 aaKnown RBP3.93□□□□□ -1.78
CHD1-201ENST00000284049 ZNF326Q5BKZ1 582 aaKnown RBP3.93□□□□□ -1.78
CHD1-201ENST00000284049 ZNF579Q8NAF0 562 aaKnown RBP3.93□□□□□ -1.78
CHD1-201ENST00000284049 RNF39Q9H2S5 420 aa3.93□□□□□ -1.78
CHD1-201ENST00000284049 GPCPD1Q9NPB8 672 aa3.93□□□□□ -1.78
CHD1-201ENST00000284049 RBM19Q9Y4C8 960 aaKnown RBP3.93□□□□□ -1.78
CHD1-201ENST00000284049 AMHR2Q16671 573 aa3.93□□□□□ -1.78
CHD1-201ENST00000284049 MAP3K7O43318 606 aa3.93□□□□□ -1.78
CHD1-201ENST00000284049 RGS22Q8NE09 1264 aa3.93□□□□□ -1.78
CHD1-201ENST00000284049 TMEM259Q4ZIN3 620 aa3.92□□□□□ -1.78
CHD1-201ENST00000284049 ARIH1Q9Y4X5 557 aaPredicted RBP3.92□□□□□ -1.78
CHD1-201ENST00000284049 NCAPD3P42695 1498 aa3.92□□□□□ -1.78
CHD1-201ENST00000284049 KCNA1Q09470 495 aa3.92□□□□□ -1.78
CHD1-201ENST00000284049 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP3.92□□□□□ -1.78
CHD1-201ENST00000284049 COG6Q9Y2V7 657 aa3.92□□□□□ -1.78
CHD1-201ENST00000284049 IRF5Q13568 498 aa3.91□□□□□ -1.78
CHD1-201ENST00000284049 GLMNQ92990 594 aa3.91□□□□□ -1.78
CHD1-201ENST00000284049 CHMP4AQ9BY43 222 aa3.91□□□□□ -1.78
CHD1-201ENST00000284049 BAZ1AQ9NRL2 1556 aaPredicted RBP3.91□□□□□ -1.78
CHD1-201ENST00000284049 LMOD1P29536 600 aaPredicted RBP3.91□□□□□ -1.78
CHD1-201ENST00000284049 CHADLQ6NUI6 762 aa3.91□□□□□ -1.78
CHD1-201ENST00000284049 SND1Q7KZF4 910 aaKnown RBP eCLIP3.91□□□□□ -1.78
CHD1-201ENST00000284049 NCKAP5LQ9HCH0 1330 aa3.91□□□□□ -1.78
CHD1-201ENST00000284049 AKT1S1Q96B36 256 aa3.9□□□□□ -1.78
CHD1-201ENST00000284049 GPHNQ9NQX3 736 aaPredicted RBP3.9□□□□□ -1.78
CHD1-201ENST00000284049 MFSD10Q14728 455 aa3.9□□□□□ -1.78
CHD1-201ENST00000284049 HDGFL1Q5TGJ6 251 aa3.9□□□□□ -1.78
CHD1-201ENST00000284049 ANKRD13AQ8IZ07 590 aa3.9□□□□□ -1.78
CHD1-201ENST00000284049 FAM177A1Q8N128 213 aaPredicted RBP3.9□□□□□ -1.79
CHD1-201ENST00000284049 CREBZFQ9NS37 354 aa3.9□□□□□ -1.79
CHD1-201ENST00000284049 PSMD1Q99460 953 aa3.9□□□□□ -1.79
CHD1-201ENST00000284049 BCL2L13Q9BXK5 485 aa3.9□□□□□ -1.79
CHD1-201ENST00000284049 BANK1Q8NDB2 785 aa3.89□□□□□ -1.79
CHD1-201ENST00000284049 SNRKQ9NRH2 765 aa3.89□□□□□ -1.79
CHD1-201ENST00000284049 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP3.89□□□□□ -1.796e-7■■■■□ 23.1
CHD1-201ENST00000284049 PNMA1Q8ND90 353 aa3.89□□□□□ -1.79
CHD1-201ENST00000284049 TMEM106CQ9BVX2 250 aa3.89□□□□□ -1.79
CHD1-201ENST00000284049 ONECUT3O60422 494 aaPredicted RBP3.89□□□□□ -1.79
CHD1-201ENST00000284049 WASHC4Q2M389 1173 aa3.89□□□□□ -1.79
CHD1-201ENST00000284049 TCF3P15923 654 aa3.89□□□□□ -1.79
CHD1-201ENST00000284049 TBC1D2BQ9UPU7 963 aa3.89□□□□□ -1.79
CHD1-201ENST00000284049 RFC5P40937 340 aa3.89□□□□□ -1.79
CHD1-201ENST00000284049 CAMK2BQ13554 666 aa3.89□□□□□ -1.79
CHD1-201ENST00000284049 NOL8Q76FK4 1167 aaKnown RBP3.88□□□□□ -1.79
CHD1-201ENST00000284049 SREK1Q8WXA9 508 aaKnown RBP3.88□□□□□ -1.79
CHD1-201ENST00000284049 ERCC3P19447 782 aa3.88□□□□□ -1.79
CHD1-201ENST00000284049 SMARCA5O60264 1052 aaPredicted RBP3.88□□□□□ -1.79
CHD1-201ENST00000284049 IFNL1Q8IU54 200 aa3.88□□□□□ -1.79
CHD1-201ENST00000284049 PLPP6Q8IY26 295 aa3.88□□□□□ -1.79
CHD1-201ENST00000284049 ZNF526Q8TF50 670 aaPredicted RBP3.88□□□□□ -1.79
CHD1-201ENST00000284049 EIF4G1Q04637 1599 aaKnown RBP3.87□□□□□ -1.79
CHD1-201ENST00000284049 MS4A1P11836 297 aa3.87□□□□□ -1.79
CHD1-201ENST00000284049 GIPC2Q8TF65 315 aa3.87□□□□□ -1.79
CHD1-201ENST00000284049 SMARCA4P51532 1647 aa3.87□□□□□ -1.79
CHD1-201ENST00000284049 HELBQ8NG08 1087 aaPredicted RBP3.87□□□□□ -1.79
CHD1-201ENST00000284049 ANKRD62A6NC57 917 aa3.87□□□□□ -1.79
CHD1-201ENST00000284049 CLSTN1O94985 981 aa3.87□□□□□ -1.79
CHD1-201ENST00000284049 DSG2Q14126 1118 aa3.87□□□□□ -1.79
CHD1-201ENST00000284049 OATP04181 439 aa3.87□□□□□ -1.79
CHD1-201ENST00000284049 FBXO22Q8NEZ5 403 aa3.87□□□□□ -1.79
CHD1-201ENST00000284049 TSR1Q2NL82 804 aaKnown RBP3.87□□□□□ -1.79
CHD1-201ENST00000284049 RBM33Q96EV2 1170 aaKnown RBP3.87□□□□□ -1.79
CHD1-201ENST00000284049 CWC22Q9HCG8 908 aaKnown RBP3.87□□□□□ -1.79
CHD1-201ENST00000284049 MAP3K13O43283 966 aa3.86□□□□□ -1.79
CHD1-201ENST00000284049 DRC1Q96MC2 740 aa3.86□□□□□ -1.79
CHD1-201ENST00000284049 BRD2P25440 801 aaKnown RBP3.86□□□□□ -1.79
CHD1-201ENST00000284049 SEMA3FQ13275 785 aa3.86□□□□□ -1.79
CHD1-201ENST00000284049 NLRP7Q8WX94 980 aa3.86□□□□□ -1.79
CHD1-201ENST00000284049 MRRFQ96E11 262 aaKnown RBP3.86□□□□□ -1.79
CHD1-201ENST00000284049 MYSM1Q5VVJ2 828 aa3.86□□□□□ -1.79
CHD1-201ENST00000284049 EMILIN3Q9NT22 766 aa3.86□□□□□ -1.79
CHD1-201ENST00000284049 IBSPP21815 317 aaPredicted RBP3.85□□□□□ -1.79
CHD1-201ENST00000284049 MARSP56192 900 aaKnown RBP3.85□□□□□ -1.79
CHD1-201ENST00000284049 RBM46Q8TBY0 533 aaKnown RBP3.85□□□□□ -1.79
CHD1-201ENST00000284049 FECHP22830 423 aa3.85□□□□□ -1.79
Retrieved 100 of 20,778 RNA–protein pairs in 31.5 ms