RNA–Protein interactions for RNA: ENST00000278386.10

CD44-203, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 1 (best) BASIC

Gene CD44, Length 484 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-203ENST00000278386 LTBP4Q8N2S1 1624 aa20.2■□□□□ 0.82
CD44-203ENST00000278386 DNMT1P26358 1616 aaKnown RBP20.18■□□□□ 0.82
CD44-203ENST00000278386 RNF17Q9BXT8 1623 aaKnown RBP20.18■□□□□ 0.82
CD44-203ENST00000278386 MYOM3Q5VTT5 1437 aa20.18■□□□□ 0.82
CD44-203ENST00000278386 A2ML1A8K2U0 1454 aa20.18■□□□□ 0.82
CD44-203ENST00000278386 ZC3H13Q5T200 1668 aaKnown RBP20.17■□□□□ 0.82
CD44-203ENST00000278386 TSPY4P0CV99 314 aa20.17■□□□□ 0.82
CD44-203ENST00000278386 TSPY10P0CW01 314 aa20.17■□□□□ 0.82
CD44-203ENST00000278386 NCKAP5LQ9HCH0 1330 aa20.17■□□□□ 0.82
CD44-203ENST00000278386 PZPP20742 1482 aa20.17■□□□□ 0.82
CD44-203ENST00000278386 EIF2AK4Q9P2K8 1649 aaKnown RBP20.16■□□□□ 0.82
CD44-203ENST00000278386 CROCC2H7BZ55 1655 aa20.16■□□□□ 0.82
CD44-203ENST00000278386 KANK4Q5T7N3 995 aaPredicted RBP20.15■□□□□ 0.82
CD44-203ENST00000278386 TCOF1Q13428 1488 aaKnown RBP20.15■□□□□ 0.82
CD44-203ENST00000278386 MIA2Q96PC5 1412 aa20.14■□□□□ 0.81
CD44-203ENST00000278386 TNRQ92752 1358 aa20.14■□□□□ 0.81
CD44-203ENST00000278386 CEP152O94986 1710 aa20.13■□□□□ 0.81
CD44-203ENST00000278386 IQSEC2Q5JU85 1478 aa20.13■□□□□ 0.81
CD44-203ENST00000278386 WASHC2CQ9Y4E1 1318 aa20.13■□□□□ 0.81
CD44-203ENST00000278386 PKD2Q13563 968 aa20.12■□□□□ 0.81
CD44-203ENST00000278386 PTPN23Q9H3S7 1636 aa20.11■□□□□ 0.81
CD44-203ENST00000278386 ABCC3O15438 1527 aa20.09■□□□□ 0.81
CD44-203ENST00000278386 FBXO31Q5XUX0 539 aaPredicted RBP20.09■□□□□ 0.81
CD44-203ENST00000278386 ZNF335Q9H4Z2 1342 aaPredicted RBP20.08■□□□□ 0.81
CD44-203ENST00000278386 APLP2Q06481 763 aa20.08■□□□□ 0.81
CD44-203ENST00000278386 MROH1Q8NDA8 1641 aa20.08■□□□□ 0.8
CD44-203ENST00000278386 NEURL4Q96JN8 1562 aa20.08■□□□□ 0.8
CD44-203ENST00000278386 CFAP65Q6ZU64 1925 aaKnown RBP20.08■□□□□ 0.8
CD44-203ENST00000278386 DUOX2Q9NRD8 1548 aa20.07■□□□□ 0.8
CD44-203ENST00000278386 NLRP1Q9C000 1473 aa20.05■□□□□ 0.8
CD44-203ENST00000278386 SHANK2Q9UPX8 1470 aa20.05■□□□□ 0.8
CD44-203ENST00000278386 UGGT1Q9NYU2 1555 aa20.05■□□□□ 0.8
CD44-203ENST00000278386 SPATA31D1Q6ZQQ2 1576 aa20.04■□□□□ 0.8
CD44-203ENST00000278386 PRDM15P57071 1507 aaPredicted RBP20.02■□□□□ 0.79
CD44-203ENST00000278386 KIF15Q9NS87 1388 aa20.01■□□□□ 0.79
CD44-203ENST00000278386 ERVK-7P63135 1459 aa20■□□□□ 0.79
CD44-203ENST00000278386 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP20■□□□□ 0.79
CD44-203ENST00000278386 DEPDC5O75140 1603 aa20■□□□□ 0.79
CD44-203ENST00000278386 FGD6Q6ZV73 1430 aa20■□□□□ 0.79
CD44-203ENST00000278386 IQGAP1P46940 1657 aa19.99■□□□□ 0.79
CD44-203ENST00000278386 ABCC5O15440 1437 aa19.99■□□□□ 0.79
CD44-203ENST00000278386 DAPK1P53355 1430 aa19.99■□□□□ 0.79
CD44-203ENST00000278386 ERBINQ96RT1 1412 aa19.99■□□□□ 0.79
CD44-203ENST00000278386 UBR1Q8IWV7 1749 aa19.97■□□□□ 0.79
CD44-203ENST00000278386 THEMISQ8N1K5 641 aaPredicted RBP19.96■□□□□ 0.79
CD44-203ENST00000278386 CPS1P31327 1500 aa19.96■□□□□ 0.79
CD44-203ENST00000278386 UBAP1LF5GYI3 381 aa19.95■□□□□ 0.78
CD44-203ENST00000278386 DISP3Q9P2K9 1392 aa19.95■□□□□ 0.78
CD44-203ENST00000278386 ANKLE2Q86XL3 938 aa19.94■□□□□ 0.78
CD44-203ENST00000278386 NPHP4O75161 1426 aaPredicted RBP19.93■□□□□ 0.78
CD44-203ENST00000278386 VWDEQ8N2E2 1590 aa19.93■□□□□ 0.78
CD44-203ENST00000278386 RRP7BPQ9NSQ0 103 aa19.93■□□□□ 0.78
CD44-203ENST00000278386 MED14O60244 1454 aa19.92■□□□□ 0.78
CD44-203ENST00000278386 KANK1Q14678 1352 aa19.89■□□□□ 0.77
CD44-203ENST00000278386 GRWD1Q9BQ67 446 aaKnown RBP eCLIP19.89■□□□□ 0.77
CD44-203ENST00000278386 ANKRD30AQ9BXX3 1397 aa19.89■□□□□ 0.77
CD44-203ENST00000278386 PIK3C2BO00750 1634 aa19.88■□□□□ 0.77
CD44-203ENST00000278386 CHIC2Q9UKJ5 165 aa19.88■□□□□ 0.77
CD44-203ENST00000278386 STRCP1A6NGW2 1772 aa19.88■□□□□ 0.77
CD44-203ENST00000278386 ARHGAP31Q2M1Z3 1444 aa19.87■□□□□ 0.77
CD44-203ENST00000278386 SYNMO15061 1565 aa19.87■□□□□ 0.77
CD44-203ENST00000278386 SCAF1Q9H7N4 1312 aaKnown RBP19.86■□□□□ 0.77
CD44-203ENST00000278386 SCAF11Q99590 1463 aaKnown RBP19.85■□□□□ 0.77
CD44-203ENST00000278386 LMTK2Q8IWU2 1503 aa19.83■□□□□ 0.77
CD44-203ENST00000278386 ADGRL2O95490 1459 aa19.83■□□□□ 0.76
CD44-203ENST00000278386 SLIT1O75093 1534 aa19.82■□□□□ 0.76
CD44-203ENST00000278386 EFCAB6Q5THR3 1501 aa19.82■□□□□ 0.76
CD44-203ENST00000278386 FAM50AQ14320 339 aaKnown RBP19.82■□□□□ 0.76
CD44-203ENST00000278386 KDM5AP29375 1690 aaKnown RBP19.81■□□□□ 0.76
CD44-203ENST00000278386 ARHGAP23Q9P227 1491 aa19.8■□□□□ 0.76
CD44-203ENST00000278386 PIP4K2BP78356 416 aa19.8■□□□□ 0.76
CD44-203ENST00000278386 TOM1O60784 492 aa19.79■□□□□ 0.76
CD44-203ENST00000278386 STAG3Q9UJ98 1225 aa19.77■□□□□ 0.76
CD44-203ENST00000278386 ADGRB3O60242 1522 aa19.76■□□□□ 0.75
CD44-203ENST00000278386 LRRC7Q96NW7 1537 aa19.76■□□□□ 0.75
CD44-203ENST00000278386 ILDR2Q71H61 639 aa19.76■□□□□ 0.75
CD44-203ENST00000278386 TET3O43151 1660 aa19.75■□□□□ 0.75
CD44-203ENST00000278386 GCC2Q8IWJ2 1684 aa19.75■□□□□ 0.75
CD44-203ENST00000278386 ALKQ9UM73 1620 aa19.75■□□□□ 0.75
CD44-203ENST00000278386 MYO5BQ9ULV0 1848 aa19.74■□□□□ 0.75
CD44-203ENST00000278386 TXNDC2Q86VQ3 553 aa19.74■□□□□ 0.75
CD44-203ENST00000278386 EID1Q9Y6B2 187 aa19.74■□□□□ 0.75
CD44-203ENST00000278386 ANKRD50Q9ULJ7 1429 aa19.74■□□□□ 0.75
CD44-203ENST00000278386 XIRP1Q702N8 1843 aaKnown RBP19.74■□□□□ 0.75
CD44-203ENST00000278386 LTKP29376 864 aa19.73■□□□□ 0.75
CD44-203ENST00000278386 UNC13BO14795 1591 aa19.73■□□□□ 0.75
CD44-203ENST00000278386 TMEM2Q9UHN6 1383 aa19.72■□□□□ 0.75
CD44-203ENST00000278386 NOS1P29475 1434 aa19.71■□□□□ 0.75
CD44-203ENST00000278386 HSPA1LP34931 641 aa19.71■□□□□ 0.75
CD44-203ENST00000278386 MED1Q15648 1581 aaPredicted RBP19.7■□□□□ 0.74
CD44-203ENST00000278386 RPRD2Q5VT52 1461 aaKnown RBP19.69■□□□□ 0.74
CD44-203ENST00000278386 IDI1Q13907 227 aa19.68■□□□□ 0.74
CD44-203ENST00000278386 E9PCH4 1651 aa19.66■□□□□ 0.74
CD44-203ENST00000278386 SENP3Q9H4L4 574 aaPredicted RBP19.65■□□□□ 0.74
CD44-203ENST00000278386 IQGAP3Q86VI3 1631 aa19.65■□□□□ 0.74
CD44-203ENST00000278386 SOCS7O14512 581 aa19.64■□□□□ 0.73
CD44-203ENST00000278386 SLC52A1Q9NWF4 448 aa19.62■□□□□ 0.73
CD44-203ENST00000278386 TMEM131LA2VDJ0 1609 aa19.62■□□□□ 0.73
CD44-203ENST00000278386 NWD1Q149M9 1564 aa19.61■□□□□ 0.73
CD44-203ENST00000278386 ROCK1Q13464 1354 aa19.61■□□□□ 0.73
Retrieved 100 of 20,778 RNA–protein pairs in 37.9 ms