RNA–Protein interactions for RNA: ENST00000277198.6

C9orf3-201, Transcript of chromosome 9 open reading frame 3, humanhuman

TSL 2 BASIC

Gene C9orf3, Length 1,966 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
C9orf3-201ENST00000277198 PTPRKQ15262 1439 aa18.27■□□□□ 0.52
C9orf3-201ENST00000277198 RTEL1-TNFRSF6BF6WH68 1400 aa18.26■□□□□ 0.51
C9orf3-201ENST00000277198 TONSLQ96HA7 1378 aa18.26■□□□□ 0.51
C9orf3-201ENST00000277198 SUPT16HQ9Y5B9 1047 aaKnown RBP18.26■□□□□ 0.51
C9orf3-201ENST00000277198 TCOF1Q13428 1488 aaKnown RBP18.25■□□□□ 0.51
C9orf3-201ENST00000277198 CCER2I3L3R5 266 aa18.24■□□□□ 0.51
C9orf3-201ENST00000277198 ADGBQ8N7X0 1667 aa18.24■□□□□ 0.51
C9orf3-201ENST00000277198 DDX10Q13206 875 aaKnown RBP18.22■□□□□ 0.51
C9orf3-201ENST00000277198 RSPH4AQ5TD94 716 aa18.22■□□□□ 0.51
C9orf3-201ENST00000277198 GGT6Q6P531 493 aa18.22■□□□□ 0.51
C9orf3-201ENST00000277198 TSPY4P0CV99 314 aa18.21■□□□□ 0.51
C9orf3-201ENST00000277198 TSPY10P0CW01 314 aa18.21■□□□□ 0.51
C9orf3-201ENST00000277198 LMTK3Q96Q04 1460 aa18.21■□□□□ 0.51
C9orf3-201ENST00000277198 ABCC5O15440 1437 aa18.21■□□□□ 0.51
C9orf3-201ENST00000277198 DHX29Q7Z478 1369 aaKnown RBP18.2■□□□□ 0.5
C9orf3-201ENST00000277198 HSPA2P54652 639 aa18.19■□□□□ 0.5
C9orf3-201ENST00000277198 KIF3BO15066 747 aa18.17■□□□□ 0.5
C9orf3-201ENST00000277198 MAST1Q9Y2H9 1570 aa18.17■□□□□ 0.5
C9orf3-201ENST00000277198 C3P01024 1663 aa18.17■□□□□ 0.5
C9orf3-201ENST00000277198 DAPK1P53355 1430 aa18.16■□□□□ 0.5
C9orf3-201ENST00000277198 ESF1Q9H501 851 aaKnown RBP18.16■□□□□ 0.5
C9orf3-201ENST00000277198 ANP32CO43423 234 aa18.15■□□□□ 0.5
C9orf3-201ENST00000277198 CHIC2Q9UKJ5 165 aa18.15■□□□□ 0.5
C9orf3-201ENST00000277198 CLTCQ00610 1675 aaKnown RBP18.14■□□□□ 0.49
C9orf3-201ENST00000277198 DNMT1P26358 1616 aaKnown RBP18.14■□□□□ 0.49
C9orf3-201ENST00000277198 CROCC2H7BZ55 1655 aa18.14■□□□□ 0.49
C9orf3-201ENST00000277198 ZMYM3Q14202 1370 aa18.13■□□□□ 0.49
C9orf3-201ENST00000277198 RRP7BPQ9NSQ0 103 aa18.13■□□□□ 0.49
C9orf3-201ENST00000277198 GCC2Q8IWJ2 1684 aa18.12■□□□□ 0.49
C9orf3-201ENST00000277198 CNTLNQ9NXG0 1405 aa18.12■□□□□ 0.49
C9orf3-201ENST00000277198 SHANK2Q9UPX8 1470 aa18.11■□□□□ 0.49
C9orf3-201ENST00000277198 KIF15Q9NS87 1388 aa18.11■□□□□ 0.49
C9orf3-201ENST00000277198 MROH2AA6NES4 1674 aa18.07■□□□□ 0.48
C9orf3-201ENST00000277198 ROCK1Q13464 1354 aa18.07■□□□□ 0.48
C9orf3-201ENST00000277198 PREX1Q8TCU6 1659 aa18.06■□□□□ 0.48
C9orf3-201ENST00000277198 MROH1Q8NDA8 1641 aa18.06■□□□□ 0.48
C9orf3-201ENST00000277198 DUOX2Q9NRD8 1548 aa18.05■□□□□ 0.48
C9orf3-201ENST00000277198 UHRF1BP1Q6BDS2 1440 aa18.05■□□□□ 0.48
C9orf3-201ENST00000277198 FBXO31Q5XUX0 539 aaPredicted RBP18.05■□□□□ 0.48
C9orf3-201ENST00000277198 KDM5DQ9BY66 1539 aa18.04■□□□□ 0.48
C9orf3-201ENST00000277198 WASHC2CQ9Y4E1 1318 aa18.04■□□□□ 0.48
C9orf3-201ENST00000277198 NCOA1Q15788 1441 aa18.04■□□□□ 0.48
C9orf3-201ENST00000277198 RNF17Q9BXT8 1623 aaKnown RBP18.04■□□□□ 0.48
C9orf3-201ENST00000277198 PPP6R1Q9UPN7 881 aa18.02■□□□□ 0.48
C9orf3-201ENST00000277198 ANKRD30AQ9BXX3 1397 aa18.02■□□□□ 0.48
C9orf3-201ENST00000277198 EIF2AK4Q9P2K8 1649 aaKnown RBP18.01■□□□□ 0.47
C9orf3-201ENST00000277198 HIRIP3Q9BW71 556 aaPredicted RBP18.01■□□□□ 0.47
C9orf3-201ENST00000277198 ABCC3O15438 1527 aa18.01■□□□□ 0.47
C9orf3-201ENST00000277198 NPATQ14207 1427 aa18.01■□□□□ 0.47
C9orf3-201ENST00000277198 SETD1BQ9UPS6 1966 aaKnown RBP18■□□□□ 0.47
C9orf3-201ENST00000277198 ADGRL2O95490 1459 aa18■□□□□ 0.47
C9orf3-201ENST00000277198 ERBINQ96RT1 1412 aa18■□□□□ 0.47
C9orf3-201ENST00000277198 MPHOSPH9Q99550 1183 aa18■□□□□ 0.47
C9orf3-201ENST00000277198 GRWD1Q9BQ67 446 aaKnown RBP eCLIP17.99■□□□□ 0.47
C9orf3-201ENST00000277198 TRIM52Q96A61 297 aa17.98■□□□□ 0.47
C9orf3-201ENST00000277198 PZPP20742 1482 aa17.97■□□□□ 0.47
C9orf3-201ENST00000277198 MYO3AQ8NEV4 1616 aa17.97■□□□□ 0.47
C9orf3-201ENST00000277198 CEP152O94986 1710 aa17.97■□□□□ 0.47
C9orf3-201ENST00000277198 PRDM15P57071 1507 aaPredicted RBP17.96■□□□□ 0.47
C9orf3-201ENST00000277198 NEFLP07196 543 aa17.95■□□□□ 0.46
C9orf3-201ENST00000277198 EIF4G2P78344 907 aaKnown RBP eCLIP17.95■□□□□ 0.46
C9orf3-201ENST00000277198 FAM135AQ9P2D6 1515 aa17.95■□□□□ 0.46
C9orf3-201ENST00000277198 STRCQ7RTU9 1775 aa17.94■□□□□ 0.46
C9orf3-201ENST00000277198 TNRQ92752 1358 aa17.93■□□□□ 0.46
C9orf3-201ENST00000277198 DEPDC5O75140 1603 aa17.93■□□□□ 0.46
C9orf3-201ENST00000277198 ANKRD50Q9ULJ7 1429 aa17.93■□□□□ 0.46
C9orf3-201ENST00000277198 CEP170BQ9Y4F5 1589 aaPredicted RBP17.93■□□□□ 0.46
C9orf3-201ENST00000277198 RPRD2Q5VT52 1461 aaKnown RBP17.92■□□□□ 0.46
C9orf3-201ENST00000277198 ANKRD30BQ9BXX2 1392 aa17.92■□□□□ 0.46
C9orf3-201ENST00000277198 HSPA5P11021 654 aaKnown RBP17.92■□□□□ 0.46
C9orf3-201ENST00000277198 TSHZ2Q9NRE2 1034 aa17.92■□□□□ 0.46
C9orf3-201ENST00000277198 FKBP8Q14318 412 aa17.91■□□□□ 0.46
C9orf3-201ENST00000277198 ZC3H13Q5T200 1668 aaKnown RBP17.91■□□□□ 0.46
C9orf3-201ENST00000277198 CAMSAP1Q5T5Y3 1602 aa17.91■□□□□ 0.46
C9orf3-201ENST00000277198 WASHC2AQ641Q2 1341 aa17.91■□□□□ 0.46
C9orf3-201ENST00000277198 ZNF142P52746 1687 aaPredicted RBP17.9■□□□□ 0.46
C9orf3-201ENST00000277198 ERVK-7P63135 1459 aa17.89■□□□□ 0.45
C9orf3-201ENST00000277198 L3MBTL2Q969R5 705 aa17.89■□□□□ 0.45
C9orf3-201ENST00000277198 NCKAP5LQ9HCH0 1330 aa17.88■□□□□ 0.45
C9orf3-201ENST00000277198 VWDEQ8N2E2 1590 aa17.88■□□□□ 0.45
C9orf3-201ENST00000277198 A2ML1A8K2U0 1454 aa17.87■□□□□ 0.45
C9orf3-201ENST00000277198 CFAP65Q6ZU64 1925 aaKnown RBP17.87■□□□□ 0.45
C9orf3-201ENST00000277198 SPATA31D1Q6ZQQ2 1576 aa17.87■□□□□ 0.45
C9orf3-201ENST00000277198 KANK1Q14678 1352 aa17.85■□□□□ 0.45
C9orf3-201ENST00000277198 ARHGAP31Q2M1Z3 1444 aa17.83■□□□□ 0.45
C9orf3-201ENST00000277198 LMTK2Q8IWU2 1503 aa17.83■□□□□ 0.44
C9orf3-201ENST00000277198 CCDC7Q96M83 1385 aa17.82■□□□□ 0.44
C9orf3-201ENST00000277198 SLC4A1APQ9BWU0 796 aaKnown RBP17.81■□□□□ 0.44
C9orf3-201ENST00000277198 NLRP1Q9C000 1473 aa17.81■□□□□ 0.44
C9orf3-201ENST00000277198 EFCAB6Q5THR3 1501 aa17.81■□□□□ 0.44
C9orf3-201ENST00000277198 UNC13BO14795 1591 aa17.81■□□□□ 0.44
C9orf3-201ENST00000277198 SPATA31E1Q6ZUB1 1445 aa17.8■□□□□ 0.44
C9orf3-201ENST00000277198 PLA2R1Q13018 1463 aa17.8■□□□□ 0.44
C9orf3-201ENST00000277198 UGGT1Q9NYU2 1555 aa17.79■□□□□ 0.44
C9orf3-201ENST00000277198 ILDR1Q86SU0 546 aaPredicted RBP17.79■□□□□ 0.44
C9orf3-201ENST00000277198 PTPRTO14522 1441 aa17.78■□□□□ 0.44
C9orf3-201ENST00000277198 ERICH6BQ5W0A0 696 aa17.78■□□□□ 0.44
C9orf3-201ENST00000277198 SYNMO15061 1565 aa17.77■□□□□ 0.44
C9orf3-201ENST00000277198 HNRNPUQ00839 825 aaKnown RBP eCLIP17.77■□□□□ 0.44
C9orf3-201ENST00000277198 DMRT2Q9Y5R5 561 aa17.77■□□□□ 0.43
Retrieved 100 of 20,778 RNA–protein pairs in 43 ms