RNA–Protein interactions for RNA: ENST00000265745.13

VPS41-201, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 2

Gene VPS41, Length 769 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-201ENST00000265745 SUPT6HQ7KZ85 1726 aaKnown RBP15.29■□□□□ 0.04
VPS41-201ENST00000265745 PTPRKQ15262 1439 aa15.28■□□□□ 0.04
VPS41-201ENST00000265745 PREX1Q8TCU6 1659 aa15.28■□□□□ 0.04
VPS41-201ENST00000265745 MIA2Q96PC5 1412 aa15.27■□□□□ 0.04
VPS41-201ENST00000265745 C3P01024 1663 aa15.27■□□□□ 0.03
VPS41-201ENST00000265745 MYOM3Q5VTT5 1437 aa15.26■□□□□ 0.03
VPS41-201ENST00000265745 RNF216Q9NWF9 866 aaPredicted RBP15.26■□□□□ 0.03
VPS41-201ENST00000265745 PTPRTO14522 1441 aa15.26■□□□□ 0.03
VPS41-201ENST00000265745 WASHC2CQ9Y4E1 1318 aa15.25■□□□□ 0.03
VPS41-201ENST00000265745 FBXO31Q5XUX0 539 aaPredicted RBP15.24■□□□□ 0.03
VPS41-201ENST00000265745 NCOA1Q15788 1441 aa15.24■□□□□ 0.03
VPS41-201ENST00000265745 ARHGEF5Q12774 1597 aa15.24■□□□□ 0.03
VPS41-201ENST00000265745 NCKAP5LQ9HCH0 1330 aa15.22■□□□□ 0.03
VPS41-201ENST00000265745 MROH2AA6NES4 1674 aa15.21■□□□□ 0.03
VPS41-201ENST00000265745 ADGBQ8N7X0 1667 aa15.21■□□□□ 0.03
VPS41-201ENST00000265745 PKD2Q13563 968 aa15.2■□□□□ 0.02
VPS41-201ENST00000265745 STRCQ7RTU9 1775 aa15.19■□□□□ 0.02
VPS41-201ENST00000265745 TNRQ92752 1358 aa15.18■□□□□ 0.02
VPS41-201ENST00000265745 CLTCQ00610 1675 aaKnown RBP15.18■□□□□ 0.02
VPS41-201ENST00000265745 CAMSAP1Q5T5Y3 1602 aa15.17■□□□□ 0.02
VPS41-201ENST00000265745 ABCC5O15440 1437 aa15.17■□□□□ 0.02
VPS41-201ENST00000265745 PZPP20742 1482 aa15.16■□□□□ 0.02
VPS41-201ENST00000265745 RRP7BPQ9NSQ0 103 aa15.16■□□□□ 0.02
VPS41-201ENST00000265745 PLA2R1Q13018 1463 aa15.15■□□□□ 0.02
VPS41-201ENST00000265745 KDM5DQ9BY66 1539 aa15.15■□□□□ 0.02
VPS41-201ENST00000265745 FAM135AQ9P2D6 1515 aa15.15■□□□□ 0.02
VPS41-201ENST00000265745 MAST1Q9Y2H9 1570 aa15.15■□□□□ 0.02
VPS41-201ENST00000265745 A2ML1A8K2U0 1454 aa15.14■□□□□ 0.01
VPS41-201ENST00000265745 KIF15Q9NS87 1388 aa15.13■□□□□ 0.01
VPS41-201ENST00000265745 FGD6Q6ZV73 1430 aa15.13■□□□□ 0.01
VPS41-201ENST00000265745 THEMISQ8N1K5 641 aaPredicted RBP15.13■□□□□ 0.01
VPS41-201ENST00000265745 TCOF1Q13428 1488 aaKnown RBP15.13■□□□□ 0.01
VPS41-201ENST00000265745 CEP170BQ9Y4F5 1589 aaPredicted RBP15.12■□□□□ 0.01
VPS41-201ENST00000265745 ZNF335Q9H4Z2 1342 aaPredicted RBP15.12■□□□□ 0.01
VPS41-201ENST00000265745 CHIC2Q9UKJ5 165 aa15.11■□□□□ 0.01
VPS41-201ENST00000265745 DAPK1P53355 1430 aa15.1■□□□□ 0.01
VPS41-201ENST00000265745 SHANK2Q9UPX8 1470 aa15.1■□□□□ 0.01
VPS41-201ENST00000265745 ANKLE2Q86XL3 938 aa15.1■□□□□ 0.01
VPS41-201ENST00000265745 DUOX2Q9NRD8 1548 aa15.1■□□□□ 0.01
VPS41-201ENST00000265745 LTBP4Q8N2S1 1624 aa15.1■□□□□ 0.01
VPS41-201ENST00000265745 MYO3AQ8NEV4 1616 aa15.1■□□□□ 0.01
VPS41-201ENST00000265745 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP15.09■□□□□ 0.01
VPS41-201ENST00000265745 NLRP1Q9C000 1473 aa15.08■□□□□ 0.01
VPS41-201ENST00000265745 ABCC3O15438 1527 aa15.08■□□□□ 0.01
VPS41-201ENST00000265745 GRWD1Q9BQ67 446 aaKnown RBP eCLIP15.08■□□□□ 01e-6■■■■□ 19.8
VPS41-201ENST00000265745 ANKRD30AQ9BXX3 1397 aa15.08■□□□□ 0
VPS41-201ENST00000265745 PTPN23Q9H3S7 1636 aa15.07■□□□□ 0
VPS41-201ENST00000265745 FAM50AQ14320 339 aaKnown RBP15.07■□□□□ 0
VPS41-201ENST00000265745 ERBINQ96RT1 1412 aa15.07■□□□□ 0
VPS41-201ENST00000265745 DNMT1P26358 1616 aaKnown RBP15.06■□□□□ 0
VPS41-201ENST00000265745 ZNF142P52746 1687 aaPredicted RBP15.06■□□□□ 0
VPS41-201ENST00000265745 RNF17Q9BXT8 1623 aaKnown RBP15.06■□□□□ 0
VPS41-201ENST00000265745 MROH1Q8NDA8 1641 aa15.03■□□□□ -0
VPS41-201ENST00000265745 EIF2AK4Q9P2K8 1649 aaKnown RBP15.03■□□□□ -0
VPS41-201ENST00000265745 ERVK-7P63135 1459 aa15.03■□□□□ -0
VPS41-201ENST00000265745 IQSEC2Q5JU85 1478 aa15.03■□□□□ -0
VPS41-201ENST00000265745 ARHGAP31Q2M1Z3 1444 aa15.03■□□□□ -0
VPS41-201ENST00000265745 UGGT1Q9NYU2 1555 aa15.02■□□□□ -0
VPS41-201ENST00000265745 KANK1Q14678 1352 aa15.01□□□□□ -0.01
VPS41-201ENST00000265745 SPATA31D1Q6ZQQ2 1576 aa15.01□□□□□ -0.01
VPS41-201ENST00000265745 UBAP1LF5GYI3 381 aa15□□□□□ -0.01
VPS41-201ENST00000265745 HOXD11P31277 338 aaPredicted RBP15□□□□□ -0.01
VPS41-201ENST00000265745 MED14O60244 1454 aa14.99□□□□□ -0.01
VPS41-201ENST00000265745 NPHP4O75161 1426 aaPredicted RBP14.99□□□□□ -0.01
VPS41-201ENST00000265745 PRDM15P57071 1507 aaPredicted RBP14.98□□□□□ -0.01
VPS41-201ENST00000265745 ADGRL2O95490 1459 aa14.98□□□□□ -0.01
VPS41-201ENST00000265745 LTKP29376 864 aa14.97□□□□□ -0.01
VPS41-201ENST00000265745 IDI1Q13907 227 aa14.97□□□□□ -0.01
VPS41-201ENST00000265745 TXNDC2Q86VQ3 553 aa14.97□□□□□ -0.01
VPS41-201ENST00000265745 ZC3H13Q5T200 1668 aaKnown RBP14.97□□□□□ -0.01
VPS41-201ENST00000265745 NEURL4Q96JN8 1562 aa14.96□□□□□ -0.01
VPS41-201ENST00000265745 ANKRD50Q9ULJ7 1429 aa14.96□□□□□ -0.01
VPS41-201ENST00000265745 PPARGC1BQ86YN6 1023 aaKnown RBP14.95□□□□□ -0.02
VPS41-201ENST00000265745 CROCC2H7BZ55 1655 aa14.94□□□□□ -0.02
VPS41-201ENST00000265745 LMTK2Q8IWU2 1503 aa14.94□□□□□ -0.02
VPS41-201ENST00000265745 STAG3Q9UJ98 1225 aa14.94□□□□□ -0.02
VPS41-201ENST00000265745 EID1Q9Y6B2 187 aa14.94□□□□□ -0.02
VPS41-201ENST00000265745 SLC52A1Q9NWF4 448 aa14.92□□□□□ -0.02
VPS41-201ENST00000265745 TMEM2Q9UHN6 1383 aa14.92□□□□□ -0.02
VPS41-201ENST00000265745 VWDEQ8N2E2 1590 aa14.92□□□□□ -0.02
VPS41-201ENST00000265745 ARHGAP23Q9P227 1491 aa14.91□□□□□ -0.02
VPS41-201ENST00000265745 ROCK1Q13464 1354 aa14.91□□□□□ -0.02
VPS41-201ENST00000265745 TOM1O60784 492 aa14.91□□□□□ -0.02
VPS41-201ENST00000265745 DEPDC5O75140 1603 aa14.91□□□□□ -0.02
VPS41-201ENST00000265745 CPS1P31327 1500 aa14.91□□□□□ -0.02
VPS41-201ENST00000265745 NOS1P29475 1434 aa14.91□□□□□ -0.02
VPS41-201ENST00000265745 SCAF11Q99590 1463 aaKnown RBP14.9□□□□□ -0.02
VPS41-201ENST00000265745 SLC4A2P04920 1241 aa14.9□□□□□ -0.02
VPS41-201ENST00000265745 CEP152O94986 1710 aa14.89□□□□□ -0.03
VPS41-201ENST00000265745 SLIT1O75093 1534 aa14.89□□□□□ -0.03
VPS41-201ENST00000265745 ITGAEP38570 1179 aa14.89□□□□□ -0.03
VPS41-201ENST00000265745 PIP4K2BP78356 416 aa14.88□□□□□ -0.03
VPS41-201ENST00000265745 DISP3Q9P2K9 1392 aa14.86□□□□□ -0.03
VPS41-201ENST00000265745 RPRD2Q5VT52 1461 aaKnown RBP14.85□□□□□ -0.03
VPS41-201ENST00000265745 POLR1AO95602 1720 aaPredicted RBP14.85□□□□□ -0.03
VPS41-201ENST00000265745 EFCAB6Q5THR3 1501 aa14.85□□□□□ -0.03
VPS41-201ENST00000265745 HSPA1LP34931 641 aa14.84□□□□□ -0.03
VPS41-201ENST00000265745 UBR1Q8IWV7 1749 aa14.83□□□□□ -0.03
VPS41-201ENST00000265745 LRRC7Q96NW7 1537 aa14.83□□□□□ -0.04
VPS41-201ENST00000265745 SLC26A8Q96RN1 970 aa14.83□□□□□ -0.04
Retrieved 100 of 20,778 RNA–protein pairs in 20.2 ms