RNA–Protein interactions for RNA: ENST00000262554.6

SPTLC1-201, Transcript of serine palmitoyltransferase long chain base subunit 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SPTLC1, Length 1,894 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPTLC1-201ENST00000262554 MAGI2Q86UL8 1455 aa18.06■□□□□ 0.48
SPTLC1-201ENST00000262554 CCDC7Q96M83 1385 aa18.06■□□□□ 0.48
SPTLC1-201ENST00000262554 RTEL1-TNFRSF6BF6WH68 1400 aa18.06■□□□□ 0.48
SPTLC1-201ENST00000262554 GRWD1Q9BQ67 446 aaKnown RBP eCLIP18.05■□□□□ 0.482e-9■■■■□ 25.4
SPTLC1-201ENST00000262554 ASXL2Q76L83 1435 aa18.05■□□□□ 0.48
SPTLC1-201ENST00000262554 ZNF326Q5BKZ1 582 aaKnown RBP18.05■□□□□ 0.48
SPTLC1-201ENST00000262554 SPAG9O60271 1321 aaKnown RBP18.05■□□□□ 0.48
SPTLC1-201ENST00000262554 FANCAO15360 1455 aa18.05■□□□□ 0.48
SPTLC1-201ENST00000262554 CCDC144AA2RUR9 1427 aa18.04■□□□□ 0.48
SPTLC1-201ENST00000262554 CNTLNQ9NXG0 1405 aa18.04■□□□□ 0.48
SPTLC1-201ENST00000262554 ZFYVE16Q7Z3T8 1539 aa18.03■□□□□ 0.48
SPTLC1-201ENST00000262554 RALGAPBQ86X10 1494 aa18.03■□□□□ 0.48
SPTLC1-201ENST00000262554 KDM5CP41229 1560 aa18.01■□□□□ 0.47
SPTLC1-201ENST00000262554 USP47Q96K76 1375 aa18.01■□□□□ 0.47
SPTLC1-201ENST00000262554 C11orf95C9JLR9 678 aaPredicted RBP18.01■□□□□ 0.47
SPTLC1-201ENST00000262554 NPM1P06748 294 aaKnown RBP eCLIP18.01■□□□□ 0.47
SPTLC1-201ENST00000262554 MAPK8IP2Q13387 824 aaPredicted RBP18■□□□□ 0.47
SPTLC1-201ENST00000262554 AFAP1Q8N556 730 aa18■□□□□ 0.47
SPTLC1-201ENST00000262554 INO80Q9ULG1 1556 aaPredicted RBP17.99■□□□□ 0.47
SPTLC1-201ENST00000262554 DCAF11Q8TEB1 546 aa17.99■□□□□ 0.47
SPTLC1-201ENST00000262554 ATP7AQ04656 1500 aa17.98■□□□□ 0.47
SPTLC1-201ENST00000262554 KIF7Q2M1P5 1343 aa17.98■□□□□ 0.47
SPTLC1-201ENST00000262554 ADGRL1O94910 1474 aa17.98■□□□□ 0.47
SPTLC1-201ENST00000262554 PLA2R1Q13018 1463 aa17.98■□□□□ 0.47
SPTLC1-201ENST00000262554 KDM2AQ9Y2K7 1162 aa17.97■□□□□ 0.47
SPTLC1-201ENST00000262554 ATP10AO60312 1499 aa17.97■□□□□ 0.47
SPTLC1-201ENST00000262554 SCAPERQ9BY12 1400 aa17.95■□□□□ 0.46
SPTLC1-201ENST00000262554 DEPDC5O75140 1603 aa17.95■□□□□ 0.46
SPTLC1-201ENST00000262554 BCORL1Q5H9F3 1711 aa17.95■□□□□ 0.46
SPTLC1-201ENST00000262554 CARD11Q9BXL7 1154 aa17.95■□□□□ 0.46
SPTLC1-201ENST00000262554 CFAP74Q9C0B2 1584 aa17.93■□□□□ 0.46
SPTLC1-201ENST00000262554 ARID4BQ4LE39 1312 aaPredicted RBP17.93■□□□□ 0.46
SPTLC1-201ENST00000262554 TRPM1Q7Z4N2 1603 aa17.92■□□□□ 0.46
SPTLC1-201ENST00000262554 E9PCH4 1651 aa17.92■□□□□ 0.46
SPTLC1-201ENST00000262554 EIF2AK4Q9P2K8 1649 aaKnown RBP17.92■□□□□ 0.46
SPTLC1-201ENST00000262554 PRAG1Q86YV5 1406 aa17.91■□□□□ 0.46
SPTLC1-201ENST00000262554 ROCK2O75116 1388 aaKnown RBP17.9■□□□□ 0.46
SPTLC1-201ENST00000262554 A2MP01023 1474 aa17.9■□□□□ 0.46
SPTLC1-201ENST00000262554 MYT1LQ9UL68 1186 aa17.9■□□□□ 0.46
SPTLC1-201ENST00000262554 TET3O43151 1660 aa17.89■□□□□ 0.46
SPTLC1-201ENST00000262554 RGL3Q3MIN7 710 aa17.89■□□□□ 0.45
SPTLC1-201ENST00000262554 KANK1Q14678 1352 aa17.89■□□□□ 0.45
SPTLC1-201ENST00000262554 ZNF518AQ6AHZ1 1483 aa17.87■□□□□ 0.45
SPTLC1-201ENST00000262554 SPHKAPQ2M3C7 1700 aa17.87■□□□□ 0.45
SPTLC1-201ENST00000262554 PRKRIP1Q9H875 184 aaPredicted RBP17.87■□□□□ 0.45
SPTLC1-201ENST00000262554 DHX29Q7Z478 1369 aaKnown RBP17.87■□□□□ 0.45
SPTLC1-201ENST00000262554 CD109Q6YHK3 1445 aa17.87■□□□□ 0.45
SPTLC1-201ENST00000262554 KIDINS220Q9ULH0 1771 aa17.87■□□□□ 0.45
SPTLC1-201ENST00000262554 VWDEQ8N2E2 1590 aa17.86■□□□□ 0.45
SPTLC1-201ENST00000262554 LAMC1P11047 1609 aa17.86■□□□□ 0.45
SPTLC1-201ENST00000262554 TRPM2O94759 1503 aa17.86■□□□□ 0.45
SPTLC1-201ENST00000262554 CEP152O94986 1710 aa17.85■□□□□ 0.45
SPTLC1-201ENST00000262554 PRDM15P57071 1507 aaPredicted RBP17.84■□□□□ 0.45
SPTLC1-201ENST00000262554 KIF3BO15066 747 aa17.84■□□□□ 0.45
SPTLC1-201ENST00000262554 ST20-MTHFSA0A0A6YYL1 179 aa17.83■□□□□ 0.44
SPTLC1-201ENST00000262554 POLR3GLQ9BT43 218 aa17.83■□□□□ 0.44
SPTLC1-201ENST00000262554 GPRASP1Q5JY77 1395 aa17.83■□□□□ 0.44
SPTLC1-201ENST00000262554 PTPRTO14522 1441 aa17.82■□□□□ 0.44
SPTLC1-201ENST00000262554 MROH1Q8NDA8 1641 aa17.81■□□□□ 0.44
SPTLC1-201ENST00000262554 POGZQ7Z3K3 1410 aa17.8■□□□□ 0.44
SPTLC1-201ENST00000262554 CLTCL1P53675 1640 aa17.79■□□□□ 0.44
SPTLC1-201ENST00000262554 HECW2Q9P2P5 1572 aa17.78■□□□□ 0.44
SPTLC1-201ENST00000262554 MLH3Q9UHC1 1453 aa17.77■□□□□ 0.44
SPTLC1-201ENST00000262554 NBPF1Q3BBV0 1214 aa17.77■□□□□ 0.43
SPTLC1-201ENST00000262554 RNF17Q9BXT8 1623 aaKnown RBP17.77■□□□□ 0.43
SPTLC1-201ENST00000262554 NEO1Q92859 1461 aa17.76■□□□□ 0.43
SPTLC1-201ENST00000262554 STAC3Q96MF2 364 aa17.76■□□□□ 0.43
SPTLC1-201ENST00000262554 MRS2Q9HD23 443 aa17.76■□□□□ 0.43
SPTLC1-201ENST00000262554 SUPT16HQ9Y5B9 1047 aaKnown RBP17.76■□□□□ 0.43
SPTLC1-201ENST00000262554 MADDQ8WXG6 1647 aa17.76■□□□□ 0.43
SPTLC1-201ENST00000262554 HNRNPUQ00839 825 aaKnown RBP eCLIP17.75■□□□□ 0.43
SPTLC1-201ENST00000262554 EFCAB6Q5THR3 1501 aa17.75■□□□□ 0.43
SPTLC1-201ENST00000262554 NEURL4Q96JN8 1562 aa17.74■□□□□ 0.43
SPTLC1-201ENST00000262554 CCDC184Q52MB2 194 aa17.74■□□□□ 0.43
SPTLC1-201ENST00000262554 LMTK2Q8IWU2 1503 aa17.74■□□□□ 0.43
SPTLC1-201ENST00000262554 KIF1BO60333 1816 aa17.72■□□□□ 0.43
SPTLC1-201ENST00000262554 PPRC1Q5VV67 1664 aaKnown RBP17.72■□□□□ 0.43
SPTLC1-201ENST00000262554 MAP3K4Q9Y6R4 1608 aa17.71■□□□□ 0.43
SPTLC1-201ENST00000262554 ABCA6Q8N139 1617 aa17.7■□□□□ 0.42
SPTLC1-201ENST00000262554 FRMPD1Q5SYB0 1578 aa17.7■□□□□ 0.42
SPTLC1-201ENST00000262554 COL17A1Q9UMD9 1497 aaPredicted RBP17.69■□□□□ 0.42
SPTLC1-201ENST00000262554 FAM9BQ8IZU0 186 aa17.69■□□□□ 0.42
SPTLC1-201ENST00000262554 IQGAP1P46940 1657 aa17.68■□□□□ 0.42
SPTLC1-201ENST00000262554 KTN1Q86UP2 1357 aaKnown RBP17.67■□□□□ 0.42
SPTLC1-201ENST00000262554 KIAA1210Q9ULL0 1709 aa17.67■□□□□ 0.42
SPTLC1-201ENST00000262554 TESK2Q96S53 571 aa17.67■□□□□ 0.42
SPTLC1-201ENST00000262554 RNF216Q9NWF9 866 aaPredicted RBP17.67■□□□□ 0.42
SPTLC1-201ENST00000262554 RIMBP3CA6NJZ7 1639 aa17.67■□□□□ 0.42
SPTLC1-201ENST00000262554 RIMBP3BA6NNM3 1639 aa17.67■□□□□ 0.42
SPTLC1-201ENST00000262554 RIMBP3Q9UFD9 1639 aa17.67■□□□□ 0.42
SPTLC1-201ENST00000262554 GLI2P10070 1586 aa17.66■□□□□ 0.42
SPTLC1-201ENST00000262554 CYB5RLQ6IPT4 315 aa17.66■□□□□ 0.42
SPTLC1-201ENST00000262554 RICTORQ6R327 1708 aa17.66■□□□□ 0.42
SPTLC1-201ENST00000262554 NEFLP07196 543 aa17.65■□□□□ 0.42
SPTLC1-201ENST00000262554 UGGT1Q9NYU2 1555 aa17.65■□□□□ 0.42
SPTLC1-201ENST00000262554 TMF1P82094 1093 aa17.65■□□□□ 0.42
SPTLC1-201ENST00000262554 CNGB1Q14028 1251 aaPredicted RBP17.65■□□□□ 0.42
SPTLC1-201ENST00000262554 MYOM2P54296 1465 aa17.64■□□□□ 0.41
SPTLC1-201ENST00000262554 DMRT2Q9Y5R5 561 aa17.64■□□□□ 0.41
SPTLC1-201ENST00000262554 IFT172Q9UG01 1749 aa17.64■□□□□ 0.41
Retrieved 100 of 20,778 RNA–protein pairs in 12.9 ms