RNA–Protein interactions for RNA: ENST00000248668.4

LRFN1-201, Transcript of leucine rich repeat and fibronectin type III domain containing 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LRFN1, Length 3,381 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LRFN1-201ENST00000248668 MYO5CQ9NQX4 1742 aa21.68■■□□□ 1.06
LRFN1-201ENST00000248668 IRX6P78412 446 aaPredicted RBP21.68■■□□□ 1.06
LRFN1-201ENST00000248668 CCDC144AA2RUR9 1427 aa21.68■■□□□ 1.06
LRFN1-201ENST00000248668 KDM5DQ9BY66 1539 aa21.67■■□□□ 1.06
LRFN1-201ENST00000248668 TRAPPC8Q9Y2L5 1435 aa21.67■■□□□ 1.06
LRFN1-201ENST00000248668 PLCH2O75038 1416 aa21.67■■□□□ 1.06
LRFN1-201ENST00000248668 BCORL1Q5H9F3 1711 aa21.66■■□□□ 1.06
LRFN1-201ENST00000248668 ROCK2O75116 1388 aaKnown RBP21.65■■□□□ 1.06
LRFN1-201ENST00000248668 NBPF1Q3BBV0 1214 aa21.65■■□□□ 1.06
LRFN1-201ENST00000248668 TSHZ2Q9NRE2 1034 aa21.65■■□□□ 1.06
LRFN1-201ENST00000248668 SPAG9O60271 1321 aaKnown RBP21.62■■□□□ 1.05
LRFN1-201ENST00000248668 RALGAPBQ86X10 1494 aa21.62■■□□□ 1.05
LRFN1-201ENST00000248668 UHRF1BP1Q6BDS2 1440 aa21.61■■□□□ 1.05
LRFN1-201ENST00000248668 PLA2R1Q13018 1463 aa21.61■■□□□ 1.05
LRFN1-201ENST00000248668 KDM5CP41229 1560 aa21.61■■□□□ 1.05
LRFN1-201ENST00000248668 DHX29Q7Z478 1369 aaKnown RBP21.58■■□□□ 1.04
LRFN1-201ENST00000248668 UHRF1BP1LA0JNW5 1464 aa21.57■■□□□ 1.04
LRFN1-201ENST00000248668 MAST1Q9Y2H9 1570 aa21.55■■□□□ 1.04
LRFN1-201ENST00000248668 DUOX2Q9NRD8 1548 aa21.54■■□□□ 1.04
LRFN1-201ENST00000248668 ABCC1P33527 1531 aa21.53■■□□□ 1.04
LRFN1-201ENST00000248668 PRAG1Q86YV5 1406 aa21.52■■□□□ 1.04
LRFN1-201ENST00000248668 UNC13BO14795 1591 aa21.52■■□□□ 1.04
LRFN1-201ENST00000248668 PLXNC1O60486 1568 aa21.51■■□□□ 1.03
LRFN1-201ENST00000248668 A2MP01023 1474 aa21.51■■□□□ 1.03
LRFN1-201ENST00000248668 POLR1AO95602 1720 aaPredicted RBP21.51■■□□□ 1.03
LRFN1-201ENST00000248668 WDR7Q9Y4E6 1490 aa21.5■■□□□ 1.03
LRFN1-201ENST00000248668 KIF3BO15066 747 aa21.5■■□□□ 1.03
LRFN1-201ENST00000248668 ERBINQ96RT1 1412 aa21.49■■□□□ 1.03
LRFN1-201ENST00000248668 FANCAO15360 1455 aa21.48■■□□□ 1.03
LRFN1-201ENST00000248668 SCAPERQ9BY12 1400 aa21.48■■□□□ 1.03
LRFN1-201ENST00000248668 TMC1Q8TDI8 760 aa21.47■■□□□ 1.03
LRFN1-201ENST00000248668 IQGAP3Q86VI3 1631 aa21.46■■□□□ 1.03
LRFN1-201ENST00000248668 ARID4BQ4LE39 1312 aaPredicted RBP21.45■■□□□ 1.02
LRFN1-201ENST00000248668 ASXL2Q76L83 1435 aa21.44■■□□□ 1.02
LRFN1-201ENST00000248668 NPM1P06748 294 aaKnown RBP eCLIP21.43■■□□□ 1.02
LRFN1-201ENST00000248668 OSCARQ8IYS5 282 aa21.43■■□□□ 1.02
LRFN1-201ENST00000248668 ZBED9Q6R2W3 1325 aa21.42■■□□□ 1.02
LRFN1-201ENST00000248668 ADGRL1O94910 1474 aa21.41■■□□□ 1.02
LRFN1-201ENST00000248668 ZFYVE16Q7Z3T8 1539 aa21.41■■□□□ 1.02
LRFN1-201ENST00000248668 TRPM1Q7Z4N2 1603 aa21.39■■□□□ 1.02
LRFN1-201ENST00000248668 CC2D1BQ5T0F9 858 aaKnown RBP21.39■■□□□ 1.02
LRFN1-201ENST00000248668 DISP3Q9P2K9 1392 aa21.39■■□□□ 1.02
LRFN1-201ENST00000248668 MAGI2Q86UL8 1455 aa21.39■■□□□ 1.01
LRFN1-201ENST00000248668 SALL2Q9Y467 1007 aaPredicted RBP21.39■■□□□ 1.01
LRFN1-201ENST00000248668 TESK2Q96S53 571 aa21.37■■□□□ 1.01
LRFN1-201ENST00000248668 PNISRQ8TF01 805 aaKnown RBP21.36■■□□□ 1.01
LRFN1-201ENST00000248668 RTEL1-TNFRSF6BF6WH68 1400 aa21.35■■□□□ 1.01
LRFN1-201ENST00000248668 ATP7AQ04656 1500 aa21.35■■□□□ 1.01
LRFN1-201ENST00000248668 PANK3Q9H999 370 aa21.34■■□□□ 1.01
LRFN1-201ENST00000248668 ATP10AO60312 1499 aa21.33■■□□□ 1.01
LRFN1-201ENST00000248668 KANK1Q14678 1352 aa21.33■■□□□ 1.01
LRFN1-201ENST00000248668 E9PCH4 1651 aa21.33■■□□□ 1
LRFN1-201ENST00000248668 GPRASP1Q5JY77 1395 aa21.33■■□□□ 1
LRFN1-201ENST00000248668 MYBBP1AQ9BQG0 1328 aaKnown RBP21.32■■□□□ 1
LRFN1-201ENST00000248668 CHGAP10645 457 aaKnown RBP21.32■■□□□ 1
LRFN1-201ENST00000248668 TMF1P82094 1093 aa21.31■■□□□ 1
LRFN1-201ENST00000248668 GGT6Q6P531 493 aa21.31■■□□□ 1
LRFN1-201ENST00000248668 RALBP1Q15311 655 aa21.3■■□□□ 1
LRFN1-201ENST00000248668 ABCA9Q8IUA7 1624 aa21.29■■□□□ 1
LRFN1-201ENST00000248668 ARAP3Q8WWN8 1544 aa21.29■■□□□ 1
LRFN1-201ENST00000248668 KTN1Q86UP2 1357 aaKnown RBP21.28■■□□□ 1
LRFN1-201ENST00000248668 PER1O15534 1290 aaPredicted RBP21.28■■□□□ 1
LRFN1-201ENST00000248668 UGGT1Q9NYU2 1555 aa21.27■■□□□ 1
LRFN1-201ENST00000248668 PRDM15P57071 1507 aaPredicted RBP21.26■□□□□ 0.99
LRFN1-201ENST00000248668 COL17A1Q9UMD9 1497 aaPredicted RBP21.26■□□□□ 0.99
LRFN1-201ENST00000248668 B4GALNT3Q6L9W6 998 aa21.25■□□□□ 0.99
LRFN1-201ENST00000248668 SENP3Q9H4L4 574 aaPredicted RBP21.25■□□□□ 0.99
LRFN1-201ENST00000248668 INO80Q9ULG1 1556 aaPredicted RBP21.25■□□□□ 0.99
LRFN1-201ENST00000248668 CD109Q6YHK3 1445 aa21.24■□□□□ 0.99
LRFN1-201ENST00000248668 CLTCL1P53675 1640 aa21.24■□□□□ 0.99
LRFN1-201ENST00000248668 RAPGEF3O95398 923 aa21.24■□□□□ 0.99
LRFN1-201ENST00000248668 CFAP70Q5T0N1 1121 aa21.24■□□□□ 0.99
LRFN1-201ENST00000248668 NLRP13Q86W25 1043 aa21.23■□□□□ 0.99
LRFN1-201ENST00000248668 TRPM2O94759 1503 aa21.23■□□□□ 0.99
LRFN1-201ENST00000248668 BRD4O60885 1362 aaPredicted RBP21.22■□□□□ 0.99
LRFN1-201ENST00000248668 EIF2AK4Q9P2K8 1649 aaKnown RBP21.22■□□□□ 0.99
LRFN1-201ENST00000248668 PTPRTO14522 1441 aa21.22■□□□□ 0.99
LRFN1-201ENST00000248668 NUDCQ9Y266 331 aa21.22■□□□□ 0.99
LRFN1-201ENST00000248668 ADGRF5Q8IZF2 1346 aa21.21■□□□□ 0.99
LRFN1-201ENST00000248668 SPHKAPQ2M3C7 1700 aa21.2■□□□□ 0.98
LRFN1-201ENST00000248668 CFAP65Q6ZU64 1925 aaKnown RBP21.2■□□□□ 0.98
LRFN1-201ENST00000248668 PARD3Q8TEW0 1356 aa21.19■□□□□ 0.98
LRFN1-201ENST00000248668 PPP4R2Q9NY27 417 aa21.18■□□□□ 0.98
LRFN1-201ENST00000248668 TET3O43151 1660 aa21.18■□□□□ 0.98
LRFN1-201ENST00000248668 DEPDC5O75140 1603 aa21.17■□□□□ 0.98
LRFN1-201ENST00000248668 MADDQ8WXG6 1647 aa21.17■□□□□ 0.98
LRFN1-201ENST00000248668 NUTM2DQ5VT03 806 aaPredicted RBP21.17■□□□□ 0.98
LRFN1-201ENST00000248668 ZNF518AQ6AHZ1 1483 aa21.17■□□□□ 0.98
LRFN1-201ENST00000248668 KIDINS220Q9ULH0 1771 aa21.16■□□□□ 0.98
LRFN1-201ENST00000248668 SMG6Q86US8 1419 aaKnown RBP21.16■□□□□ 0.98
LRFN1-201ENST00000248668 CYB5RLQ6IPT4 315 aa21.16■□□□□ 0.98
LRFN1-201ENST00000248668 KNSTRNQ9Y448 316 aa21.16■□□□□ 0.98
LRFN1-201ENST00000248668 RBM19Q9Y4C8 960 aaKnown RBP21.16■□□□□ 0.98
LRFN1-201ENST00000248668 LRPPRCP42704 1394 aaKnown RBP21.15■□□□□ 0.98
LRFN1-201ENST00000248668 MROH1Q8NDA8 1641 aa21.14■□□□□ 0.98
LRFN1-201ENST00000248668 WASHC2CQ9Y4E1 1318 aa21.14■□□□□ 0.97
LRFN1-201ENST00000248668 LAMC1P11047 1609 aa21.13■□□□□ 0.97
LRFN1-201ENST00000248668 CEP152O94986 1710 aa21.13■□□□□ 0.97
LRFN1-201ENST00000248668 ERICH6Q7L0X2 663 aa21.13■□□□□ 0.97
LRFN1-201ENST00000248668 SCAF11Q99590 1463 aaKnown RBP21.12■□□□□ 0.97
Retrieved 100 of 20,778 RNA–protein pairs in 36.9 ms