RNA–Protein interactions for RNA: ENST00000247020.8

SDF2-201, Transcript of stromal cell derived factor 2, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SDF2, Length 1,568 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDF2-201ENST00000247020 DHX29Q7Z478 1369 aaKnown RBP20.52■□□□□ 0.88
SDF2-201ENST00000247020 TSPOAP1O95153 1857 aa20.5■□□□□ 0.87
SDF2-201ENST00000247020 ZMYM4Q5VZL5 1548 aa20.49■□□□□ 0.87
SDF2-201ENST00000247020 PKD2Q13563 968 aa20.49■□□□□ 0.87
SDF2-201ENST00000247020 PRDM15P57071 1507 aaPredicted RBP20.49■□□□□ 0.87
SDF2-201ENST00000247020 ABCA6Q8N139 1617 aa20.48■□□□□ 0.87
SDF2-201ENST00000247020 RNF17Q9BXT8 1623 aaKnown RBP20.48■□□□□ 0.87
SDF2-201ENST00000247020 FRMPD1Q5SYB0 1578 aa20.48■□□□□ 0.87
SDF2-201ENST00000247020 VWDEQ8N2E2 1590 aa20.48■□□□□ 0.87
SDF2-201ENST00000247020 A2MP01023 1474 aa20.47■□□□□ 0.87
SDF2-201ENST00000247020 PPP1R15AO75807 674 aaPredicted RBP20.46■□□□□ 0.87
SDF2-201ENST00000247020 TET3O43151 1660 aa20.45■□□□□ 0.86
SDF2-201ENST00000247020 ZNF316A6NFI3 1004 aaPredicted RBP20.45■□□□□ 0.86
SDF2-201ENST00000247020 DIP2CQ9Y2E4 1556 aa20.45■□□□□ 0.86
SDF2-201ENST00000247020 MROH1Q8NDA8 1641 aa20.45■□□□□ 0.86
SDF2-201ENST00000247020 FOXD1Q16676 465 aa20.44■□□□□ 0.86
SDF2-201ENST00000247020 ATP10AO60312 1499 aa20.43■□□□□ 0.86
SDF2-201ENST00000247020 MYT1LQ9UL68 1186 aa20.43■□□□□ 0.86
SDF2-201ENST00000247020 KANK1Q14678 1352 aa20.42■□□□□ 0.86
SDF2-201ENST00000247020 E9PCH4 1651 aa20.4■□□□□ 0.86
SDF2-201ENST00000247020 LMTK2Q8IWU2 1503 aa20.39■□□□□ 0.86
SDF2-201ENST00000247020 REREQ9P2R6 1566 aa20.38■□□□□ 0.85
SDF2-201ENST00000247020 RAPGEF3O95398 923 aa20.37■□□□□ 0.85
SDF2-201ENST00000247020 GRWD1Q9BQ67 446 aaKnown RBP eCLIP20.37■□□□□ 0.85
SDF2-201ENST00000247020 SPHKAPQ2M3C7 1700 aa20.36■□□□□ 0.85
SDF2-201ENST00000247020 KIF3BO15066 747 aa20.35■□□□□ 0.85
SDF2-201ENST00000247020 ZC3H13Q5T200 1668 aaKnown RBP20.33■□□□□ 0.85
SDF2-201ENST00000247020 CCDC144AA2RUR9 1427 aa20.33■□□□□ 0.85
SDF2-201ENST00000247020 CEP152O94986 1710 aa20.33■□□□□ 0.84
SDF2-201ENST00000247020 TRPM2O94759 1503 aa20.32■□□□□ 0.84
SDF2-201ENST00000247020 EFCAB6Q5THR3 1501 aa20.32■□□□□ 0.84
SDF2-201ENST00000247020 PLA2R1Q13018 1463 aa20.32■□□□□ 0.84
SDF2-201ENST00000247020 L3MBTL2Q969R5 705 aa20.32■□□□□ 0.84
SDF2-201ENST00000247020 PTPRTO14522 1441 aa20.3■□□□□ 0.84
SDF2-201ENST00000247020 YEATS2Q9ULM3 1422 aa20.3■□□□□ 0.84
SDF2-201ENST00000247020 AGLP35573 1532 aa20.28■□□□□ 0.84
SDF2-201ENST00000247020 NEURL4Q96JN8 1562 aa20.28■□□□□ 0.84
SDF2-201ENST00000247020 ARHGEF40Q8TER5 1519 aa20.27■□□□□ 0.84
SDF2-201ENST00000247020 UHRF1BP1Q6BDS2 1440 aa20.25■□□□□ 0.83
SDF2-201ENST00000247020 ABCC3O15438 1527 aa20.24■□□□□ 0.83
SDF2-201ENST00000247020 CAMSAP1Q5T5Y3 1602 aa20.24■□□□□ 0.83
SDF2-201ENST00000247020 COL17A1Q9UMD9 1497 aaPredicted RBP20.22■□□□□ 0.83
SDF2-201ENST00000247020 DNAJC5Q9H3Z4 198 aa20.21■□□□□ 0.83
SDF2-201ENST00000247020 CLTCL1P53675 1640 aa20.2■□□□□ 0.82
SDF2-201ENST00000247020 DIEXFQ68CQ4 756 aaKnown RBP20.2■□□□□ 0.82
SDF2-201ENST00000247020 KIF1BO60333 1816 aa20.19■□□□□ 0.82
SDF2-201ENST00000247020 ARHGAP31Q2M1Z3 1444 aa20.19■□□□□ 0.82
SDF2-201ENST00000247020 PPP6R1Q9UPN7 881 aa20.17■□□□□ 0.82
SDF2-201ENST00000247020 SPATA31E1Q6ZUB1 1445 aa20.16■□□□□ 0.82
SDF2-201ENST00000247020 RALGAPBQ86X10 1494 aa20.16■□□□□ 0.82
SDF2-201ENST00000247020 CNTLNQ9NXG0 1405 aa20.16■□□□□ 0.82
SDF2-201ENST00000247020 GGT6Q6P531 493 aa20.16■□□□□ 0.82
SDF2-201ENST00000247020 NPATQ14207 1427 aa20.15■□□□□ 0.82
SDF2-201ENST00000247020 WASHC2CQ9Y4E1 1318 aa20.14■□□□□ 0.82
SDF2-201ENST00000247020 NBPF8Q3BBV2 869 aa20.14■□□□□ 0.81
SDF2-201ENST00000247020 STAC3Q96MF2 364 aa20.14■□□□□ 0.81
SDF2-201ENST00000247020 TRPM1Q7Z4N2 1603 aa20.12■□□□□ 0.81
SDF2-201ENST00000247020 SIGLEC1Q9BZZ2 1709 aa20.12■□□□□ 0.81
SDF2-201ENST00000247020 PIK3C2BO00750 1634 aa20.1■□□□□ 0.81
SDF2-201ENST00000247020 LAMC1P11047 1609 aa20.1■□□□□ 0.81
SDF2-201ENST00000247020 NOS1P29475 1434 aa20.1■□□□□ 0.81
SDF2-201ENST00000247020 PRAG1Q86YV5 1406 aa20.1■□□□□ 0.81
SDF2-201ENST00000247020 POLR1AO95602 1720 aaPredicted RBP20.1■□□□□ 0.81
SDF2-201ENST00000247020 EIF4G2P78344 907 aaKnown RBP eCLIP20.09■□□□□ 0.81
SDF2-201ENST00000247020 IFT172Q9UG01 1749 aa20.09■□□□□ 0.81
SDF2-201ENST00000247020 DCAF11Q8TEB1 546 aa20.08■□□□□ 0.81
SDF2-201ENST00000247020 PREX1Q8TCU6 1659 aa20.08■□□□□ 0.81
SDF2-201ENST00000247020 ADGRB3O60242 1522 aa20.07■□□□□ 0.8
SDF2-201ENST00000247020 CFAP65Q6ZU64 1925 aaKnown RBP20.06■□□□□ 0.8
SDF2-201ENST00000247020 MROH2AA6NES4 1674 aa20.06■□□□□ 0.8
SDF2-201ENST00000247020 MADDQ8WXG6 1647 aa20.05■□□□□ 0.8
SDF2-201ENST00000247020 CLTCQ00610 1675 aaKnown RBP20.05■□□□□ 0.8
SDF2-201ENST00000247020 SYNMO15061 1565 aa20.05■□□□□ 0.8
SDF2-201ENST00000247020 KIAA1210Q9ULL0 1709 aa20.04■□□□□ 0.8
SDF2-201ENST00000247020 UGGT1Q9NYU2 1555 aa20.04■□□□□ 0.8
SDF2-201ENST00000247020 MYOM2P54296 1465 aa20.03■□□□□ 0.8
SDF2-201ENST00000247020 HSPA5P11021 654 aaKnown RBP20.03■□□□□ 0.8
SDF2-201ENST00000247020 TRHP20396 242 aaPredicted RBP20.03■□□□□ 0.8
SDF2-201ENST00000247020 GPRASP1Q5JY77 1395 aa20.02■□□□□ 0.8
SDF2-201ENST00000247020 RGL3Q3MIN7 710 aa20.02■□□□□ 0.8
SDF2-201ENST00000247020 KDM2AQ9Y2K7 1162 aa20■□□□□ 0.79
SDF2-201ENST00000247020 PPLO60437 1756 aa20■□□□□ 0.79
SDF2-201ENST00000247020 ZNF326Q5BKZ1 582 aaKnown RBP19.99■□□□□ 0.79
SDF2-201ENST00000247020 USP47Q96K76 1375 aa19.98■□□□□ 0.79
SDF2-201ENST00000247020 SPATA31D1Q6ZQQ2 1576 aa19.97■□□□□ 0.79
SDF2-201ENST00000247020 ERVK-7P63135 1459 aa19.97■□□□□ 0.79
SDF2-201ENST00000247020 SLC52A1Q9NWF4 448 aa19.97■□□□□ 0.79
SDF2-201ENST00000247020 ROCK2O75116 1388 aaKnown RBP19.97■□□□□ 0.79
SDF2-201ENST00000247020 NRXN1Q9ULB1 1477 aa19.96■□□□□ 0.79
SDF2-201ENST00000247020 RPGRIP1LQ68CZ1 1315 aa19.95■□□□□ 0.78
SDF2-201ENST00000247020 CARD11Q9BXL7 1154 aa19.95■□□□□ 0.78
SDF2-201ENST00000247020 HIRIP3Q9BW71 556 aaPredicted RBP19.93■□□□□ 0.78
SDF2-201ENST00000247020 TMEM131LA2VDJ0 1609 aa19.92■□□□□ 0.78
SDF2-201ENST00000247020 IQGAP1P46940 1657 aa19.92■□□□□ 0.78
SDF2-201ENST00000247020 ARID4BQ4LE39 1312 aaPredicted RBP19.91■□□□□ 0.78
SDF2-201ENST00000247020 MYO5BQ9ULV0 1848 aa19.89■□□□□ 0.77
SDF2-201ENST00000247020 NEXMIFQ5QGS0 1516 aa19.88■□□□□ 0.77
SDF2-201ENST00000247020 ESF1Q9H501 851 aaKnown RBP19.88■□□□□ 0.77
SDF2-201ENST00000247020 KDM5AP29375 1690 aaKnown RBP19.88■□□□□ 0.77
SDF2-201ENST00000247020 SETBP1Q9Y6X0 1596 aa19.88■□□□□ 0.77
Retrieved 100 of 20,778 RNA–protein pairs in 35.2 ms