RNA–Protein interactions for RNA: ENST00000238497.9

VPS4B-201, Transcript of vacuolar protein sorting 4 homolog B, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS4B, Length 3,324 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4B-201ENST00000238497 ANKRD30AQ9BXX3 1397 aa12.69□□□□□ -0.38
VPS4B-201ENST00000238497 PTPN23Q9H3S7 1636 aa12.68□□□□□ -0.38
VPS4B-201ENST00000238497 DIEXFQ68CQ4 756 aaKnown RBP12.68□□□□□ -0.38
VPS4B-201ENST00000238497 NCKAP5LQ9HCH0 1330 aa12.67□□□□□ -0.38
VPS4B-201ENST00000238497 ARHGEF5Q12774 1597 aa12.67□□□□□ -0.38
VPS4B-201ENST00000238497 DAPK1P53355 1430 aa12.67□□□□□ -0.38
VPS4B-201ENST00000238497 STAG3Q9UJ98 1225 aa12.67□□□□□ -0.38
VPS4B-201ENST00000238497 ADGBQ8N7X0 1667 aa12.67□□□□□ -0.38
VPS4B-201ENST00000238497 CLTCQ00610 1675 aaKnown RBP12.66□□□□□ -0.38
VPS4B-201ENST00000238497 C3P01024 1663 aa12.66□□□□□ -0.38
VPS4B-201ENST00000238497 PLXNC1O60486 1568 aa12.65□□□□□ -0.38
VPS4B-201ENST00000238497 TNRQ92752 1358 aa12.65□□□□□ -0.38
VPS4B-201ENST00000238497 KANK1Q14678 1352 aa12.65□□□□□ -0.38
VPS4B-201ENST00000238497 SENP3Q9H4L4 574 aaPredicted RBP12.65□□□□□ -0.38
VPS4B-201ENST00000238497 PTPRKQ15262 1439 aa12.63□□□□□ -0.39
VPS4B-201ENST00000238497 NPATQ14207 1427 aa12.62□□□□□ -0.39
VPS4B-201ENST00000238497 PREX1Q8TCU6 1659 aa12.62□□□□□ -0.39
VPS4B-201ENST00000238497 THEMISQ8N1K5 641 aaPredicted RBP12.61□□□□□ -0.39
VPS4B-201ENST00000238497 DUOX2Q9NRD8 1548 aa12.61□□□□□ -0.39
VPS4B-201ENST00000238497 CFAP65Q6ZU64 1925 aaKnown RBP12.61□□□□□ -0.39
VPS4B-201ENST00000238497 CERKQ8TCT0 537 aa12.6□□□□□ -0.39
VPS4B-201ENST00000238497 CHGAP10645 457 aaKnown RBP12.6□□□□□ -0.39
VPS4B-201ENST00000238497 KDM5DQ9BY66 1539 aa12.6□□□□□ -0.39
VPS4B-201ENST00000238497 NEUROD1Q13562 356 aa12.6□□□□□ -0.39
VPS4B-201ENST00000238497 BCANQ96GW7 911 aa12.6□□□□□ -0.39
VPS4B-201ENST00000238497 TCOF1Q13428 1488 aaKnown RBP12.6□□□□□ -0.39
VPS4B-201ENST00000238497 NCOA1Q15788 1441 aa12.6□□□□□ -0.39
VPS4B-201ENST00000238497 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP12.59□□□□□ -0.39
VPS4B-201ENST00000238497 ANKLE2Q86XL3 938 aa12.59□□□□□ -0.39
VPS4B-201ENST00000238497 FBXO41Q8TF61 875 aa12.58□□□□□ -0.4
VPS4B-201ENST00000238497 ANKRD50Q9ULJ7 1429 aa12.58□□□□□ -0.4
VPS4B-201ENST00000238497 SHANK2Q9UPX8 1470 aa12.58□□□□□ -0.4
VPS4B-201ENST00000238497 CAMSAP1Q5T5Y3 1602 aa12.57□□□□□ -0.4
VPS4B-201ENST00000238497 MAST1Q9Y2H9 1570 aa12.57□□□□□ -0.4
VPS4B-201ENST00000238497 DNMT1P26358 1616 aaKnown RBP12.57□□□□□ -0.4
VPS4B-201ENST00000238497 PKD2Q13563 968 aa12.57□□□□□ -0.4
VPS4B-201ENST00000238497 PZPP20742 1482 aa12.57□□□□□ -0.4
VPS4B-201ENST00000238497 ERBINQ96RT1 1412 aa12.56□□□□□ -0.4
VPS4B-201ENST00000238497 ZNF335Q9H4Z2 1342 aaPredicted RBP12.56□□□□□ -0.4
VPS4B-201ENST00000238497 TRIM52Q96A61 297 aa12.56□□□□□ -0.4
VPS4B-201ENST00000238497 SCAF1Q9H7N4 1312 aaKnown RBP12.55□□□□□ -0.4
VPS4B-201ENST00000238497 ABCC3O15438 1527 aa12.55□□□□□ -0.4
VPS4B-201ENST00000238497 ZNF316A6NFI3 1004 aaPredicted RBP12.55□□□□□ -0.4
VPS4B-201ENST00000238497 MROH2AA6NES4 1674 aa12.55□□□□□ -0.4
VPS4B-201ENST00000238497 CEP170BQ9Y4F5 1589 aaPredicted RBP12.54□□□□□ -0.4
VPS4B-201ENST00000238497 A2ML1A8K2U0 1454 aa12.54□□□□□ -0.4
VPS4B-201ENST00000238497 TXNDC2Q86VQ3 553 aa12.54□□□□□ -0.4
VPS4B-201ENST00000238497 FAM135AQ9P2D6 1515 aa12.53□□□□□ -0.4
VPS4B-201ENST00000238497 NUP155O75694 1391 aa12.53□□□□□ -0.4
VPS4B-201ENST00000238497 EID1Q9Y6B2 187 aa12.53□□□□□ -0.4
VPS4B-201ENST00000238497 IDI1Q13907 227 aa12.52□□□□□ -0.41
VPS4B-201ENST00000238497 MYO3AQ8NEV4 1616 aa12.51□□□□□ -0.41
VPS4B-201ENST00000238497 PPP1R15AO75807 674 aaPredicted RBP12.51□□□□□ -0.41
VPS4B-201ENST00000238497 ERVK-7P63135 1459 aa12.51□□□□□ -0.41
VPS4B-201ENST00000238497 UGGT1Q9NYU2 1555 aa12.5□□□□□ -0.41
VPS4B-201ENST00000238497 PTPRTO14522 1441 aa12.5□□□□□ -0.41
VPS4B-201ENST00000238497 UBAP1LF5GYI3 381 aa12.5□□□□□ -0.41
VPS4B-201ENST00000238497 NUTM2DQ5VT03 806 aaPredicted RBP12.5□□□□□ -0.41
VPS4B-201ENST00000238497 CROCC2H7BZ55 1655 aa12.5□□□□□ -0.41
VPS4B-201ENST00000238497 CEP152O94986 1710 aa12.49□□□□□ -0.41
VPS4B-201ENST00000238497 NLRP1Q9C000 1473 aa12.49□□□□□ -0.41
VPS4B-201ENST00000238497 EIF2AK4Q9P2K8 1649 aaKnown RBP12.49□□□□□ -0.41
VPS4B-201ENST00000238497 STRCQ7RTU9 1775 aa12.49□□□□□ -0.41
VPS4B-201ENST00000238497 RNF17Q9BXT8 1623 aaKnown RBP12.48□□□□□ -0.41
VPS4B-201ENST00000238497 ADGRL2O95490 1459 aa12.48□□□□□ -0.41
VPS4B-201ENST00000238497 LTKP29376 864 aa12.47□□□□□ -0.41
VPS4B-201ENST00000238497 PIP4K2BP78356 416 aa12.47□□□□□ -0.41
VPS4B-201ENST00000238497 SLC26A8Q96RN1 970 aa12.47□□□□□ -0.41
VPS4B-201ENST00000238497 MROH1Q8NDA8 1641 aa12.46□□□□□ -0.41
VPS4B-201ENST00000238497 PLA2R1Q13018 1463 aa12.46□□□□□ -0.41
VPS4B-201ENST00000238497 ROCK1Q13464 1354 aa12.46□□□□□ -0.41
VPS4B-201ENST00000238497 HIRIP3Q9BW71 556 aaPredicted RBP12.46□□□□□ -0.42
VPS4B-201ENST00000238497 SLC52A1Q9NWF4 448 aa12.46□□□□□ -0.42
VPS4B-201ENST00000238497 PRDM15P57071 1507 aaPredicted RBP12.45□□□□□ -0.42
VPS4B-201ENST00000238497 ZNF326Q5BKZ1 582 aaKnown RBP12.45□□□□□ -0.42
VPS4B-201ENST00000238497 NPHP4O75161 1426 aaPredicted RBP12.45□□□□□ -0.42
VPS4B-201ENST00000238497 SIN3AQ96ST3 1273 aa12.45□□□□□ -0.42
VPS4B-201ENST00000238497 ARHGAP31Q2M1Z3 1444 aa12.43□□□□□ -0.42
VPS4B-201ENST00000238497 MIER1Q8N108 512 aa12.43□□□□□ -0.42
VPS4B-201ENST00000238497 SLC4A1APQ9BWU0 796 aaKnown RBP12.43□□□□□ -0.42
VPS4B-201ENST00000238497 ZC3H13Q5T200 1668 aaKnown RBP12.43□□□□□ -0.42
VPS4B-201ENST00000238497 RRBP1Q9P2E9 1410 aaKnown RBP12.43□□□□□ -0.42
VPS4B-201ENST00000238497 SPATA31D1Q6ZQQ2 1576 aa12.43□□□□□ -0.42
VPS4B-201ENST00000238497 RBM33Q96EV2 1170 aaKnown RBP12.42□□□□□ -0.42
VPS4B-201ENST00000238497 HDGFP51858 240 aaKnown RBP12.41□□□□□ -0.42
VPS4B-201ENST00000238497 TMEM2Q9UHN6 1383 aa12.41□□□□□ -0.42
VPS4B-201ENST00000238497 ZNF142P52746 1687 aaPredicted RBP12.41□□□□□ -0.42
VPS4B-201ENST00000238497 FOXD1Q16676 465 aa12.4□□□□□ -0.42
VPS4B-201ENST00000238497 SCAF11Q99590 1463 aaKnown RBP12.39□□□□□ -0.43
VPS4B-201ENST00000238497 TOM1O60784 492 aa12.39□□□□□ -0.43
VPS4B-201ENST00000238497 C14orf37Q86TY3 774 aa12.39□□□□□ -0.43
VPS4B-201ENST00000238497 CENPBP07199 599 aaPredicted RBP12.38□□□□□ -0.43
VPS4B-201ENST00000238497 EFCAB6Q5THR3 1501 aa12.38□□□□□ -0.43
VPS4B-201ENST00000238497 DEPDC5O75140 1603 aa12.37□□□□□ -0.43
VPS4B-201ENST00000238497 NAIPQ13075 1403 aa12.37□□□□□ -0.43
VPS4B-201ENST00000238497 PROSER2Q86WR7 435 aaPredicted RBP12.37□□□□□ -0.43
VPS4B-201ENST00000238497 NOS1P29475 1434 aa12.37□□□□□ -0.43
VPS4B-201ENST00000238497 LMTK2Q8IWU2 1503 aa12.37□□□□□ -0.43
VPS4B-201ENST00000238497 PIK3C2BO00750 1634 aa12.35□□□□□ -0.43
VPS4B-201ENST00000238497 RAB3GAP2Q9H2M9 1393 aa12.35□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 72.8 ms