RNA–Protein interactions for RNA: ENST00000234420.9

MSH6-201, Transcript of mutS homolog 6, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene MSH6, Length 7,476 nt, Biotype protein coding, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6-201ENST00000234420 MAPK8IP2Q13387 824 aaPredicted RBP13.82□□□□□ -0.2
MSH6-201ENST00000234420 DHX16O60231 1041 aaKnown RBP13.81□□□□□ -0.2
MSH6-201ENST00000234420 VPS37DQ86XT2 251 aa13.81□□□□□ -0.2
MSH6-201ENST00000234420 GSE1Q14687 1217 aa13.8□□□□□ -0.2
MSH6-201ENST00000234420 MAP7D2Q96T17 732 aa13.8□□□□□ -0.2
MSH6-201ENST00000234420 PLCD4Q9BRC7 762 aa13.79□□□□□ -0.2
MSH6-201ENST00000234420 FOXD4L5Q5VV16 416 aaPredicted RBP13.79□□□□□ -0.2
MSH6-201ENST00000234420 FOXD4L4Q8WXT5 416 aaPredicted RBP13.79□□□□□ -0.2
MSH6-201ENST00000234420 TMEM132AQ24JP5 1023 aa13.79□□□□□ -0.2
MSH6-201ENST00000234420 NECTIN2Q92692 538 aa13.78□□□□□ -0.2
MSH6-201ENST00000234420 FAM177BA6PVY3 158 aa13.78□□□□□ -0.2
MSH6-201ENST00000234420 EID1Q9Y6B2 187 aa13.78□□□□□ -0.2
MSH6-201ENST00000234420 KDM4AO75164 1064 aa13.78□□□□□ -0.2
MSH6-201ENST00000234420 BCL11BQ9C0K0 894 aaPredicted RBP13.78□□□□□ -0.2
MSH6-201ENST00000234420 ZNF428Q96B54 188 aa13.78□□□□□ -0.2
MSH6-201ENST00000234420 AMPHP49418 695 aa13.77□□□□□ -0.2
MSH6-201ENST00000234420 MORC1Q86VD1 984 aa13.77□□□□□ -0.2
MSH6-201ENST00000234420 CHMP4BP1P59074 171 aa13.76□□□□□ -0.21
MSH6-201ENST00000234420 HSP90AB3PQ58FF7 597 aa13.76□□□□□ -0.21
MSH6-201ENST00000234420 NOL10Q9BSC4 688 aaKnown RBP13.76□□□□□ -0.21
MSH6-201ENST00000234420 DCAF11Q8TEB1 546 aa13.75□□□□□ -0.21
MSH6-201ENST00000234420 KANK1Q14678 1352 aa13.75□□□□□ -0.21
MSH6-201ENST00000234420 GRM1Q13255 1194 aa13.75□□□□□ -0.21
MSH6-201ENST00000234420 SPDYE4A6NLX3 237 aa13.74□□□□□ -0.21
MSH6-201ENST00000234420 CHMP4BQ9H444 224 aaKnown RBP13.74□□□□□ -0.21
MSH6-201ENST00000234420 MFAP1P55081 439 aaKnown RBP13.74□□□□□ -0.21
MSH6-201ENST00000234420 RDXP35241 583 aaKnown RBP13.74□□□□□ -0.21
MSH6-201ENST00000234420 AK7Q96M32 723 aa13.74□□□□□ -0.21
MSH6-201ENST00000234420 FOXD4L6Q3SYB3 417 aaPredicted RBP13.73□□□□□ -0.21
MSH6-201ENST00000234420 FOXD4L3Q6VB84 417 aaPredicted RBP13.73□□□□□ -0.21
MSH6-201ENST00000234420 PHF14O94880 888 aa13.73□□□□□ -0.21
MSH6-201ENST00000234420 CDCA8Q53HL2 280 aa13.73□□□□□ -0.21
MSH6-201ENST00000234420 STK11IPQ8N1F8 1099 aa13.73□□□□□ -0.21
MSH6-201ENST00000234420 TPD52L1Q16890 204 aaPredicted RBP13.73□□□□□ -0.21
MSH6-201ENST00000234420 HDGFL2Q7Z4V5 671 aaPredicted RBP13.73□□□□□ -0.21
MSH6-201ENST00000234420 MS4A1P11836 297 aa13.72□□□□□ -0.21
MSH6-201ENST00000234420 CCDC43Q96MW1 224 aaKnown RBP13.72□□□□□ -0.21
MSH6-201ENST00000234420 CYB5RLQ6IPT4 315 aa13.72□□□□□ -0.21
MSH6-201ENST00000234420 IKQ13123 557 aaPredicted RBP13.72□□□□□ -0.21
MSH6-201ENST00000234420 H0YHG0 523 aa13.72□□□□□ -0.21
MSH6-201ENST00000234420 TCERG1O14776 1098 aaKnown RBP13.7□□□□□ -0.22
MSH6-201ENST00000234420 FAM43AQ8N2R8 423 aa13.7□□□□□ -0.22
MSH6-201ENST00000234420 PLIN1O60240 522 aa13.7□□□□□ -0.22
MSH6-201ENST00000234420 RBM33Q96EV2 1170 aaKnown RBP13.7□□□□□ -0.22
MSH6-201ENST00000234420 FOSBP53539 338 aa13.7□□□□□ -0.22
MSH6-201ENST00000234420 CCDC70Q6NSX1 233 aa13.7□□□□□ -0.22
MSH6-201ENST00000234420 ITPRIPQ8IWB1 547 aa13.69□□□□□ -0.22
MSH6-201ENST00000234420 CCDC191Q8NCU4 936 aa13.69□□□□□ -0.22
MSH6-201ENST00000234420 DCAF1Q9Y4B6 1507 aa13.69□□□□□ -0.22
MSH6-201ENST00000234420 GPATCH3Q96I76 525 aa13.69□□□□□ -0.22
MSH6-201ENST00000234420 PDZRN4Q6ZMN7 1036 aaPredicted RBP13.68□□□□□ -0.22
MSH6-201ENST00000234420 CCDC66A2RUB6 948 aa13.68□□□□□ -0.22
MSH6-201ENST00000234420 PCMTD1Q96MG8 357 aaPredicted RBP13.67□□□□□ -0.22
MSH6-201ENST00000234420 DDX49Q9Y6V7 483 aaKnown RBP13.67□□□□□ -0.22
MSH6-201ENST00000234420 CSPP1Q1MSJ5 1256 aa13.67□□□□□ -0.22
MSH6-201ENST00000234420 DDX11L8A8MPP1 907 aa13.67□□□□□ -0.22
MSH6-201ENST00000234420 ZCCHC6Q5VYS8 1495 aaKnown RBP13.67□□□□□ -0.22
MSH6-201ENST00000234420 AMOTL1Q8IY63 956 aa13.67□□□□□ -0.22
MSH6-201ENST00000234420 SPAG9O60271 1321 aaKnown RBP13.67□□□□□ -0.22
MSH6-201ENST00000234420 ECM2O94769 699 aaPredicted RBP13.67□□□□□ -0.22
MSH6-201ENST00000234420 CCDC27Q2M243 656 aa13.67□□□□□ -0.22
MSH6-201ENST00000234420 ZFYVE27Q5T4F4 411 aa13.66□□□□□ -0.22
MSH6-201ENST00000234420 R3HCC1Q9Y3T6 440 aaKnown RBP13.66□□□□□ -0.22
MSH6-201ENST00000234420 CCDC97Q96F63 343 aaPredicted RBP13.66□□□□□ -0.22
MSH6-201ENST00000234420 GOLGA6L19H0YKK7 550 aa13.66□□□□□ -0.22
MSH6-201ENST00000234420 CWC15Q9P013 229 aaKnown RBP13.66□□□□□ -0.22
MSH6-201ENST00000234420 C1orf141Q5JVX7 400 aa13.66□□□□□ -0.22
MSH6-201ENST00000234420 EIF2S2P20042 333 aaKnown RBP13.65□□□□□ -0.22
MSH6-201ENST00000234420 FOXD1Q16676 465 aa13.65□□□□□ -0.22
MSH6-201ENST00000234420 DHX37Q8IY37 1157 aaKnown RBP13.65□□□□□ -0.22
MSH6-201ENST00000234420 RBM10P98175 930 aaKnown RBP13.65□□□□□ -0.23
MSH6-201ENST00000234420 NUTM2GQ5VZR2 741 aa13.65□□□□□ -0.23
MSH6-201ENST00000234420 HOMER1Q86YM7 354 aa13.64□□□□□ -0.23
MSH6-201ENST00000234420 TSR1Q2NL82 804 aaKnown RBP13.64□□□□□ -0.23
MSH6-201ENST00000234420 AKAP17AQ02040 695 aaKnown RBP13.64□□□□□ -0.23
MSH6-201ENST00000234420 U2AF1L5P0DN76 240 aaPredicted RBP13.64□□□□□ -0.23
MSH6-201ENST00000234420 U2AF1Q01081 240 aaKnown RBP eCLIP13.64□□□□□ -0.23
MSH6-201ENST00000234420 HMMRO75330 724 aa13.63□□□□□ -0.23
MSH6-201ENST00000234420 CCDC34Q96HJ3 373 aa13.63□□□□□ -0.23
MSH6-201ENST00000234420 PSME1Q06323 249 aa13.63□□□□□ -0.23
MSH6-201ENST00000234420 SKIDA1Q1XH10 827 aa13.63□□□□□ -0.23
MSH6-201ENST00000234420 RUFY1Q96T51 708 aa13.63□□□□□ -0.23
MSH6-201ENST00000234420 AEBP1Q8IUX7 1158 aa13.62□□□□□ -0.23
MSH6-201ENST00000234420 ATP2B2Q01814 1243 aa13.62□□□□□ -0.23
MSH6-201ENST00000234420 BECN2A8MW95 431 aa13.62□□□□□ -0.23
MSH6-201ENST00000234420 STK31Q9BXU1 1019 aa13.62□□□□□ -0.23
MSH6-201ENST00000234420 CA8P35219 290 aa13.61□□□□□ -0.23
MSH6-201ENST00000234420 WWC2Q6AWC2 1192 aa13.61□□□□□ -0.23
MSH6-201ENST00000234420 RBM5P52756 815 aaKnown RBP eCLIP13.6□□□□□ -0.23
MSH6-201ENST00000234420 CCDC146Q8IYE0 955 aa13.6□□□□□ -0.23
MSH6-201ENST00000234420 STRN4Q9NRL3 753 aa13.6□□□□□ -0.23
MSH6-201ENST00000234420 CHMP4CQ96CF2 233 aa13.6□□□□□ -0.23
MSH6-201ENST00000234420 SF3A1Q15459 793 aaKnown RBP13.6□□□□□ -0.23
MSH6-201ENST00000234420 HSP90B2PQ58FF3 399 aa13.6□□□□□ -0.23
MSH6-201ENST00000234420 RILPL2Q969X0 211 aa13.6□□□□□ -0.23
MSH6-201ENST00000234420 ODF2Q5BJF6 829 aa13.59□□□□□ -0.23
MSH6-201ENST00000234420 ARGLU1Q9NWB6 273 aaPredicted RBP13.59□□□□□ -0.23
MSH6-201ENST00000234420 TMF1P82094 1093 aa13.59□□□□□ -0.23
MSH6-201ENST00000234420 CCDC180Q9P1Z9 1646 aa13.59□□□□□ -0.23
MSH6-201ENST00000234420 MCTP1Q6DN14 999 aa13.58□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 47.8 ms